View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6961_low_18 (Length: 251)
Name: NF6961_low_18
Description: NF6961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6961_low_18 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 8 - 251
Target Start/End: Original strand, 21317011 - 21317259
Alignment:
| Q |
8 |
tggacatcaatgttcctataggaaaaatgaactgtacctcttgagcaacaaggtgttgctccttcacctgtgaattgaattacaataactagtcatatgc |
107 |
Q |
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| T |
21317011 |
tggacatcaatgttcctatacgaaaaatgaactgtacctcttgagaaaga-ggtgttcctccttcacctgtgagttgaattacgataactagtcatatgc |
21317109 |
T |
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| Q |
108 |
tccttctgaaagagagggggtgtattttcaaaagacactccaacacccaaataagaatggatgctagaaggtatcaaaagtggtaagtcattaaagtga- |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
21317110 |
tccttctgaaagagagggggtgtattttcaaaagacactccaacacttaaataagaatgggtgctagaaggtatcaaaagtggtaagtcattaaagtgat |
21317209 |
T |
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| Q |
207 |
-----ttgtacatgtgtgatgaggcccctatttatagtggtgggttaatc |
251 |
Q |
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| T |
21317210 |
cgtactcgtacatgtgtggtgaggcccctatttatagtggcgggttaatc |
21317259 |
T |
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