View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6961_low_19 (Length: 250)
Name: NF6961_low_19
Description: NF6961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6961_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 43215390 - 43215142
Alignment:
| Q |
1 |
tttgcaaatagttgtgtgcatattaaatggtatcaaagcctggttgagtgttgacagtgtctttgaaagggatatcaatggaggggatgactgaaaaaag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
43215390 |
tttgcaaatagttgtgtgcatattaaatggtatcaaagcctggttgagtgttgacagtgtctttgaaagggatat-aatggaggggatgactgaaaaaag |
43215292 |
T |
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| Q |
101 |
ctaaacgaagcatca--gagtgtagccgttgagacgttaggtcacagtggtggtgctaggactttggtattatggggtgccctaaaccctagatcgagta |
198 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
43215291 |
ctaaacgaagcatcatagagtgtagccgttgagacgttaggtcacagtggtggtgctaggactttggtattatggagtgccctaaaccctagatcgagta |
43215192 |
T |
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| Q |
199 |
tcataagatgtttggcagagtacttaaatgccttagttcttctcactcga |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43215191 |
tcataagatgtttggcagagtacttaaatgccttagttcttctctctcga |
43215142 |
T |
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