View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6961_low_2 (Length: 666)

Name: NF6961_low_2
Description: NF6961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6961_low_2
NF6961_low_2
[»] chr3 (4 HSPs)
chr3 (180-403)||(44989526-44989749)
chr3 (1-139)||(44989747-44989869)
chr3 (458-492)||(44989495-44989529)
chr3 (525-633)||(54417046-54417153)
[»] chr5 (1 HSPs)
chr5 (526-633)||(16570521-16570627)
[»] chr8 (2 HSPs)
chr8 (525-631)||(26835618-26835723)
chr8 (540-631)||(13580397-13580487)
[»] chr4 (1 HSPs)
chr4 (525-626)||(36071581-36071681)
[»] chr2 (1 HSPs)
chr2 (525-631)||(40876949-40877054)
[»] chr6 (2 HSPs)
chr6 (579-631)||(9815749-9815801)
chr6 (535-631)||(12174320-12174415)
[»] chr1 (1 HSPs)
chr1 (579-631)||(8246797-8246849)


Alignment Details
Target: chr3 (Bit Score: 171; Significance: 2e-91; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 180 - 403
Target Start/End: Complemental strand, 44989749 - 44989526
Alignment:
Q  180 aaaacaatatgactgacttaatttataagatatnnnnnnngtagatttagataagatataattgcttgtatcttttatcttgactatgacataaaccata 279  Q
    |||||||||||||||||||||||||||||||||       || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  44989749 aaaacaatatgactgacttaatttataagatataaaaaaagttgatttagataagatataattgcttctatcttttatcttgactatgacataaaccata 44989650  T
Q  280 acgtgacttaatttaaaagtagaatcgtatttgattgaatgtacaatttttctattctatatggtggaacacactttcagcactcgttacatgtttgggg 379  Q
    |||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  44989649 acgttacttaatttaaaaggataatcgtatttgattgaatgtacaatttttctattctatatggtgttacacactttcagcactcgttacatgtttgggg 44989550  T
Q  380 gagcaacagagcacctatacatga 403  Q
     |||||||||||||||||||||||    
T  44989549 cagcaacagagcacctatacatga 44989526  T

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Target: chr3; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 44989869 - 44989747
Alignment:
Q  1 gagaatgacagacatataatgaggtttcttggatagaccacagacagagttgcataccagatcaaaataaaacctagccgagcccaactgagactcccta 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||  |||||               |||||||||||||||    
T  44989869 gagaatgacagacatataatgaggtttcttggatagaccagagacatagttgcataccagatc--aataa--------------taactgagactcccta 44989786  T
Q  101 aagacacaaagtcctagagcaatctcaccgaatagcaaa 139  Q
    |||||||||||||||||||||||||||||||||||||||    
T  44989785 aagacacaaagtcctagagcaatctcaccgaatagcaaa 44989747  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 458 - 492
Target Start/End: Complemental strand, 44989529 - 44989495
Alignment:
Q  458 atgaatttgtaccctttaattatttgaaagtattc 492  Q
    |||||||||||||||||||||||||||||||||||    
T  44989529 atgaatttgtaccctttaattatttgaaagtattc 44989495  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 525 - 633
Target Start/End: Original strand, 54417046 - 54417153
Alignment:
Q  525 ataatcaagattctctaaaaatgtatttttgatagaattagttaaagtgagttaaaaaagaaatccatttatatagtattaactatcaagtaaaaataat 624  Q
    |||||||| ||||| ||||||  ||||||   |||||||| | ||||||| ||||||  |||||  || ||||||| | |||||| ||||||||||||||    
T  54417046 ataatcaaaattctttaaaaacatattttcagtagaattaatcaaagtgaattaaaag-gaaatgtatctatatagcactaactaccaagtaaaaataat 54417144  T
Q  625 aaatttgat 633  Q
    || ||||||    
T  54417145 aattttgat 54417153  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 526 - 633
Target Start/End: Original strand, 16570521 - 16570627
Alignment:
Q  526 taatcaagattctctaaaaatgtatttttgatagaattagttaaagtgagttaaaaaagaaatccatttatatagtattaactatcaagtaaaaataata 625  Q
    |||||||  |||||||||||| ||||||| ||||||||| | ||||||| || ||||||||||  || ||||| |||  |||||  ||||||||||||||    
T  16570521 taatcaaagttctctaaaaatatatttttaatagaattaatcaaagtgaatt-aaaaagaaatatatctatatggtaccaactaataagtaaaaataata 16570619  T
Q  626 aatttgat 633  Q
    | ||||||    
T  16570620 attttgat 16570627  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 525 - 631
Target Start/End: Original strand, 26835618 - 26835723
Alignment:
Q  525 ataatcaagattctctaaaaatgtatttttgatagaattagttaaagtgagttaaaaaagaaatccatttatatagtattaactatcaagtaaaaataat 624  Q
    ||||||||  |||||||||||| ||||||  ||||||||| | ||||  | ||||||| |||||  |||||||| ||| ||||||| |||||||||||||    
T  26835618 ataatcaaagttctctaaaaatatattttcaatagaattaataaaagaaaattaaaaa-gaaatatatttatattgtactaactattaagtaaaaataat 26835716  T
Q  625 aaatttg 631  Q
    || ||||    
T  26835717 aattttg 26835723  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 540 - 631
Target Start/End: Original strand, 13580397 - 13580487
Alignment:
Q  540 taaaaatgtatttttgatagaattagttaaagtgagttaaaaaagaaatccatttatatagtattaactatcaagtaaaaataataaatttg 631  Q
    ||||||| ||||||  ||||||||| | |||| || ||||||| |||||  ||||||||| || ||||||| ||||||||||||||| ||||    
T  13580397 taaaaatatattttcaatagaattaatcaaagcgaattaaaaa-gaaatatatttatataatactaactattaagtaaaaataataattttg 13580487  T

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Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 525 - 626
Target Start/End: Original strand, 36071581 - 36071681
Alignment:
Q  525 ataatcaagattctctaaaaatgtatttttgatagaattagttaaagtgagttaaaaaagaaatccatttatatagtattaactatcaagtaaaaataat 624  Q
    ||||||||  |||||||||||| ||||||  || |||||| | ||||  | ||||||| |||||  || ||||||||| |||||||||||||||||||||    
T  36071581 ataatcaaagttctctaaaaatatattttcaattgaattaatcaaagaaaattaaaaa-gaaatatatctatatagtactaactatcaagtaaaaataat 36071679  T
Q  625 aa 626  Q
    ||    
T  36071680 aa 36071681  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 525 - 631
Target Start/End: Original strand, 40876949 - 40877054
Alignment:
Q  525 ataatcaagattctctaaaaatgtatttttgatagaattagttaaagtgagttaaaaaagaaatccatttatatagtattaactatcaagtaaaaataat 624  Q
    ||||||||| |||| ||||||| ||||||  ||||||||| |  ||   ||||||||| |||||  ||||||||| || |||||| ||||||||||||||    
T  40876949 ataatcaaggttctataaaaatatattttcaatagaattaatccaaacaagttaaaaa-gaaatatatttatataatactaactaccaagtaaaaataat 40877047  T
Q  625 aaatttg 631  Q
    || ||||    
T  40877048 aattttg 40877054  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 579 - 631
Target Start/End: Original strand, 9815749 - 9815801
Alignment:
Q  579 aaaaagaaatccatttatatagtattaactatcaagtaaaaataataaatttg 631  Q
    ||||||||||  || ||||||||||||||||  ||||||||||||||| ||||    
T  9815749 aaaaagaaatatatctatatagtattaactactaagtaaaaataataattttg 9815801  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 535 - 631
Target Start/End: Complemental strand, 12174415 - 12174320
Alignment:
Q  535 ttctctaaaaatgtatttttgatagaattagttaaagtgagttaaaaaagaaatccatttatatagtattaactatcaagtaaaaataataaatttg 631  Q
    |||||||||||| ||||||| ||| ||||| | |||  || ||||||| |||||  || ||||||||| ||||||  ||||||||||||||| ||||    
T  12174415 ttctctaaaaatatatttttaatataattaatcaaaacgaattaaaaa-gaaatatatctatatagtactaactactaagtaaaaataataattttg 12174320  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 579 - 631
Target Start/End: Original strand, 8246797 - 8246849
Alignment:
Q  579 aaaaagaaatccatttatatagtattaactatcaagtaaaaataataaatttg 631  Q
    ||||||||||  || ||||||||| ||||||| ||||||||||||||| ||||    
T  8246797 aaaaagaaatatatctatatagtactaactattaagtaaaaataataattttg 8246849  T

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