View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6961_low_20 (Length: 247)
Name: NF6961_low_20
Description: NF6961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6961_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 24885043 - 24885278
Alignment:
| Q |
1 |
aagaatatggaaaacaacttttccacacaacgcaataagttctgcaatttactgactttgatgtaacctcccatgcttcatcccatccaagcccttcttc |
100 |
Q |
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| T |
24885043 |
aagaatatggaaaacaacttttccacacaacgcaataagttctgcaatttactgactttgatgtaacctcccatgcttcatcccatccaagcccttcttc |
24885142 |
T |
|
| Q |
101 |
gtccataagtaaacgcatcaactcaggtattgaaagggttgggtgggtatcattcaattgtacggcaacctttgtcgggaactcggaccagttccaaggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
24885143 |
gtccataagtaaacgcatcaactcaggtattgaaagggttgggtgggtatcattcaattgtatagcaacctttgtcgggaactcggaccagttccaaggt |
24885242 |
T |
|
| Q |
201 |
ccttgcctcctctccttgaatcgggaaatgatgtcc |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
24885243 |
ccttgcctcctctccttgaatcgggaaatgatgtcc |
24885278 |
T |
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