View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6961_low_21 (Length: 243)
Name: NF6961_low_21
Description: NF6961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6961_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 17064606 - 17064375
Alignment:
| Q |
1 |
tgctttgggtcaacttgatcatggacatcctctgccctttagctcttgtcagtgagccacttaacgatgaacttatgaagaggcctccagttggaatggg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
17064606 |
tgctttgggtcaacttgatcatggacatcctctgccctttagctcttgtcagtgagccacttaacgatgaacttatgaagaggcctccagttggaagggg |
17064507 |
T |
|
| Q |
101 |
agaaaaatttatcacgaatgccatgtggaggaatatttttggccaaagcatatatcaagttattgtccttatggttcttaattttgaagggaagaatata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
17064506 |
agaaaaatttatcacgaatgccatgtggaggaatatttttggccaaagcatatatcaagttattgtccttgtggttcttaattttgaagggaagaatata |
17064407 |
T |
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| Q |
201 |
cttagtataagtggttcaaatgcaaatgatgt |
232 |
Q |
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||||||||||||||||||||||||| |||||| |
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| T |
17064406 |
cttagtataagtggttcaaatgcaactgatgt |
17064375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 17583752 - 17583983
Alignment:
| Q |
1 |
tgctttgggtcaacttgatcatggacatcctctgccctttagctcttgtcagtgagccacttaacgatgaacttatgaagaggcctccagttggaatggg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
17583752 |
tgctttgggtcaacttgatcatggacatcctctgccctttagctcttgtcagtgagccacttaacgatgaacttatgaagaggcctccagttggaagggg |
17583851 |
T |
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| Q |
101 |
agaaaaatttatcacgaatgccatgtggaggaatatttttggccaaagcatatatcaagttattgtccttatggttcttaattttgaagggaagaatata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
17583852 |
agaaaaatttatcacgaatgccatgtggaggaatatttttggccaaagcatatatcaagttattgtccttgtggttcttaattttgaagggaagaatata |
17583951 |
T |
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| Q |
201 |
cttagtataagtggttcaaatgcaaatgatgt |
232 |
Q |
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||||||||||||||||||||||||| |||||| |
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| T |
17583952 |
cttagtataagtggttcaaatgcaactgatgt |
17583983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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