View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6961_low_26 (Length: 221)
Name: NF6961_low_26
Description: NF6961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6961_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 10 - 209
Target Start/End: Complemental strand, 47256888 - 47256689
Alignment:
| Q |
10 |
gatggacatcattcgcacatcttcatctggttctacctgcaatgcttttgtgcggcagcaccaataacatgcagtgataagatcgtatgcagtgcactga |
109 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
47256888 |
gatgcacatcattcgcacatcttcatctggttctacctgcaatgcttttgtgcggcagcaccaataacatgcagtgataagatcgtatgcagtgcaccga |
47256789 |
T |
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| Q |
110 |
gaaaggtgaagtggaaccaagcgacgaatcgcagctatgtgagcggatgtgaagaagaaagattgatggactacaatagtagtatcttcttccttgatgt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47256788 |
gaaaggtgaagtggaaccaagcgacgaatcgcagctatgtgagcggatgtgaagaagaaagattgatggactacaatagtagtatcttcttccttgatgt |
47256689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 10 - 209
Target Start/End: Complemental strand, 47242764 - 47242561
Alignment:
| Q |
10 |
gatggacatcattcgcacatcttcatctggttctacctgcaatgcttttgtgcggcagcaccaataacatgcagtgataagatcgtat----gcagtgca |
105 |
Q |
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| T |
47242764 |
gatgcacatcattcgtacctcttcatctggctctatctgcaatgcttttgtgcggcagcaccaataatatgcagtgataagatcaaattaatgtagtgca |
47242665 |
T |
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| Q |
106 |
ctgagaaaggtgaagtggaaccaagcgacgaatcgcagctatgtgagcggatgtgaagaagaaagattgatggactacaatagtagtatcttcttccttg |
205 |
Q |
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||| |||||||| ||||||||||| ||||||| ||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||| ||| |
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| T |
47242664 |
atgatgaaggtgaattggaaccaagcaacgaatcacagctatgtgagcaggtgtgaagaagaaagattgatggactacgatagtagtatcttcttctttg |
47242565 |
T |
|
| Q |
206 |
atgt |
209 |
Q |
| |
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|||| |
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| T |
47242564 |
atgt |
47242561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 10 - 182
Target Start/End: Complemental strand, 47283633 - 47283461
Alignment:
| Q |
10 |
gatggacatcattcgcacatcttcatctggttctacctgcaatgcttttgtgcggcagcaccaataacatgcagtgataagatcgtatgcagtgcactga |
109 |
Q |
| |
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|||| |||||||||| || ||||||||||| |||| ||||||||||||||||||||| |||||| ||||||| ||||||||||| ||| | |||| ||| |
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| T |
47283633 |
gatgcacatcattcgtacttcttcatctggctctaactgcaatgcttttgtgcggcaacaccaaaaacatgcggtgataagatcaaatgtactgcattga |
47283534 |
T |
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| Q |
110 |
gaaaggtgaagtggaaccaagcgacgaatcgcagctatgtgagcggatgtgaagaagaaagattgatggacta |
182 |
Q |
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| T |
47283533 |
cgaaggtgaaatggaatcaagtgacggattgcagctatgtgagaaagtgtaaagaagaaagattgatggacta |
47283461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 10 - 182
Target Start/End: Complemental strand, 47279040 - 47278868
Alignment:
| Q |
10 |
gatggacatcattcgcacatcttcatctggttctacctgcaatgcttttgtgcggcagcaccaataacatgcagtgataagatcgtatgcagtgcactga |
109 |
Q |
| |
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|||| |||||||||| || ||||||||||| |||| ||||||||||||||| ||||| |||||| ||||||| ||||||||||| ||| | |||| ||| |
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| T |
47279040 |
gatgcacatcattcgtacttcttcatctggctctaactgcaatgcttttgtacggcaacaccaaaaacatgcggtgataagatcaaatgtactgcattga |
47278941 |
T |
|
| Q |
110 |
gaaaggtgaagtggaaccaagcgacgaatcgcagctatgtgagcggatgtgaagaagaaagattgatggacta |
182 |
Q |
| |
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|||||||| ||||| ||| ||||||||| |||||||| ||| || ||||||||||| |||||||||| |
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| T |
47278940 |
cgaaggtgaaatggaatcaaacgacgaatctcagctatgcgagtaagcgtaaagaagaaagagtgatggacta |
47278868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 204
Target Start/End: Original strand, 47299187 - 47299381
Alignment:
| Q |
10 |
gatggacatcattcgcacatcttcatctggttctacctgcaatgcttttgtgcggcagcaccaataacatgcagtgataagatcgtatgcagtgcactga |
109 |
Q |
| |
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|||| |||||||||| || |||||||||| |||| |||||||||||||||||| || |||||| |||||| || |||||||||| ||| ||||| ||| |
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| T |
47299187 |
gatgcacatcattcgtacctcttcatctgcctctaactgcaatgcttttgtgcgacaacaccaaaaacatgaagcgataagatcgaatgtggtgcattga |
47299286 |
T |
|
| Q |
110 |
gaaaggtgaagtggaaccaagcgacgaatcgcagctatgtgagcggatgtgaagaagaaagattgatggactacaatagtagtatcttcttcctt |
204 |
Q |
| |
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|||||||| |||||||||| |||||| | ||||||| || | | | |||||||||||||||||||||| | || |||||||| |||||| |
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| T |
47299287 |
cgaaggtgaaatggaaccaagagacgaagtgtggctatgtcagaagctctaaagaagaaagattgatggactagagaagcagtatctttttcctt |
47299381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 15 - 204
Target Start/End: Original strand, 47292585 - 47292774
Alignment:
| Q |
15 |
acatcattcgcacatcttcatctggttctacctgcaatgcttttgtgcggcagcaccaataacatgcagtgataagatcgtatgcagtgcactgagaaag |
114 |
Q |
| |
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|||||||||| || |||| ||| | |||| |||||||||||||||||| || |||||| |||||| || ||||||||| ||| ||||| ||| ||| |
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| T |
47292585 |
acatcattcgtacctctttatccgcctctaactgcaatgcttttgtgcgacaacaccaaaaacatgaagcgataagatcaaatgtggtgcattgacgaag |
47292684 |
T |
|
| Q |
115 |
gtgaagtggaaccaagcgacgaatcgcagctatgtgagcggatgtgaagaagaaagattgatggactacaatagtagtatcttcttcctt |
204 |
Q |
| |
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||||| |||||||||| |||||| ||||||||||| || | | | |||||||||||| |||| |||| | || ||||||||||||||| |
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| T |
47292685 |
gtgaaatggaaccaagagacgaagcgcagctatgtcagaagctctaaagaagaaagatcgatgaactagagaagcagtatcttcttcctt |
47292774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 137
Target Start/End: Complemental strand, 47267663 - 47267541
Alignment:
| Q |
15 |
acatcattcgcacatcttcatctggttctacctgcaatgcttttgtgcggcagcaccaataacatgcagtgataagatcgtatgcagtgcactgagaaag |
114 |
Q |
| |
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|||||||||| | || ||||||| |||| |||||||||||||||||| || |||||| |||||| ||||||||||||| ||| || || || ||| |
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| T |
47267663 |
acatcattcgtatctcgtcatctgcctctaactgcaatgcttttgtgcgacaacaccaaaaacatgaagtgataagatcgaatgtggtacaatggcgaag |
47267564 |
T |
|
| Q |
115 |
gtgaagtggaaccaagcgacgaa |
137 |
Q |
| |
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||||| |||||||||| |||||| |
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| T |
47267563 |
gtgaaatggaaccaagagacgaa |
47267541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 128; Significance: 2e-66; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 10 - 209
Target Start/End: Complemental strand, 32731431 - 32731232
Alignment:
| Q |
10 |
gatggacatcattcgcacatcttcatctggttctacctgcaatgcttttgtgcggcagcaccaataacatgcagtgataagatcgtatgcagtgcactga |
109 |
Q |
| |
|
|||| |||||||||| || ||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||| ||| |
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| T |
32731431 |
gatgcacatcattcgtacctcttcatctggctctatctgcaatgcttttgtgcggcagcaccaataacatgcactgataagatcaaatgtagtgcaatga |
32731332 |
T |
|
| Q |
110 |
gaaaggtgaagtggaaccaagcgacgaatcgcagctatgtgagcggatgtgaagaagaaagattgatggactacaatagtagtatcttcttccttgatgt |
209 |
Q |
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|||||||| ||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
32731331 |
tgaaggtgaattggaaccaagcaacgaatcgcagctatgtgagcaggtgtgaagaagaaagattgatggactacgatagtagtatcttcttctttgatgt |
32731232 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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