View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6961_low_27 (Length: 220)
Name: NF6961_low_27
Description: NF6961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6961_low_27 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 43215624 - 43215407
Alignment:
| Q |
1 |
ctgacactaggttatggtttttgcgtatctgaatgaagggctcgtcaaaattttaatcattcatattcctttgtcccccgcaacagacatatagactaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43215624 |
ctgacactaggttatggtttttgcgtatctgaatgaagggctcgtcaaaattttaatcattcatattcctttgtcccccgcaacagacatatagactaga |
43215525 |
T |
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| Q |
101 |
ttaaactgtcatgaaatgatagtgccttggatactatgaggtgcctaagtcttgcatcaaaaagtatgagagatgttttgtgaagtacttaagtggcttg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
43215524 |
ttaaactgtcatgaaatgatagtgccttggatactatgaggtgcctaagtcttacatcaaaaagtat--gagatgttttgtgaagtacttaagtggcttg |
43215427 |
T |
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| Q |
201 |
gttcttccccttgataatta |
220 |
Q |
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|||||||||||||||||||| |
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| T |
43215426 |
gttcttccccttgataatta |
43215407 |
T |
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