View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6961_low_3 (Length: 659)
Name: NF6961_low_3
Description: NF6961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6961_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-175; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 8 - 382
Target Start/End: Original strand, 17106336 - 17106711
Alignment:
| Q |
8 |
ttcgtgttcttaagttcttcgtctgtgcttgaggtacttctactacttcgaatttcacaatcttttattcaaaaatcgttgtattgatcattacattcct |
107 |
Q |
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| T |
17106336 |
ttcgtgttcttaagttcttcgtctgtgcttcaggtacttctactactttgaaattcacaatcttttattcaaaaaacgttgtattgatcattacattcct |
17106435 |
T |
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| Q |
108 |
tgtgggcttcgtttgctcaaatttcactagagttcctaagccgaatttctaggataatctttgtgctttgttcacttgattttatgaatttgatgctatt |
207 |
Q |
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| T |
17106436 |
tgtgggcttcgtttgctcaaatttcactagagttccaaagccgaatttctaggataatctatgtgctttgttcacttgattttatgaatttgatgctatt |
17106535 |
T |
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| Q |
208 |
gtagatggatg-nnnnnnnnaacaactattgtagatggatgtgcttttaacatgacgtgtcttccattctatgagcttctgagttgaatagttcattgag |
306 |
Q |
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| T |
17106536 |
gtagatggatgtttttttttaacaactattgtagatggatgtgcttttaacatgacgtgtcttccattctatgagcttctgagttgaatcgttcattgag |
17106635 |
T |
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| Q |
307 |
tcggacaacagagtttgatgtatagagaatatgaatatcttatctactataattgtttgttttgaatttattgaga |
382 |
Q |
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| T |
17106636 |
tcggacaacagagtttgatgtatagaaaatatgaatatcttatctactataattgtttgttttgaatttattgaga |
17106711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 378 - 645
Target Start/End: Original strand, 17106731 - 17107007
Alignment:
| Q |
378 |
tgagaattttaaatttgacagtgattaatgtgttcgcaaagacactattttcttgattta----taacttgcccgagagatggttacacaggctgaagga |
473 |
Q |
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| T |
17106731 |
tgagaattttaaatttgacagtgattaatgtgttcgcaaacacactattttcttgatttaactttaacttgcccgagagatggttacacaggctgcatga |
17106830 |
T |
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| Q |
474 |
gtcatttgccgagttaacatttcatctggttatgatcttgtcatcttgtaatgttataacatcatcaaggcttgatgc------atgtgttcgtacgtat |
567 |
Q |
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| T |
17106831 |
gtcatt-gccgagttaacatttcatcttgttatgatcttgtcatcttgtaatgttataacatcatcaaggcttgatgcatctcaatgtgttcttacgtat |
17106929 |
T |
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| Q |
568 |
gtgtgttcaatttcatttgcttttagaacctttctcataatgcatgtttctgtactcattggtacgtttttatgatgt |
645 |
Q |
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| T |
17106930 |
gtgtgttcaatttcatttgcttttagaacctttctcataatgcatgtttctgtactcattcgtacgtttttattatgt |
17107007 |
T |
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