View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6961_low_30 (Length: 208)
Name: NF6961_low_30
Description: NF6961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6961_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 172; Significance: 1e-92; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 16 - 195
Target Start/End: Complemental strand, 5765256 - 5765077
Alignment:
| Q |
16 |
acatcaggccttgcagggtaactgaaataaacatctttaagttcaatatctccctttatgtctttcaagacaataccacttgtgtcatatgcatcaattt |
115 |
Q |
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| T |
5765256 |
acatcaggccttgcagggtaactgaaataaacatctttaagttcaatatctccatttatgtctttcaagacagtaccacttgtgtcatatgcatcaattt |
5765157 |
T |
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| Q |
116 |
taggctttcttttaattgtctcgaacattttatatgctgctgcttggcctgcagcaaatgcatctaagcatggtgatgtc |
195 |
Q |
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| T |
5765156 |
taggctttcttttaattgtctcgaacattttatatgctgctgcttggcctgcagcaaatgcatctaagcatggtgatgtc |
5765077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 16 - 194
Target Start/End: Original strand, 5832574 - 5832752
Alignment:
| Q |
16 |
acatcaggccttgcagggtaactgaaataaacatctttaagttcaatatctccctttatgtctttcaagacaataccacttgtgtcatatgcatcaattt |
115 |
Q |
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| T |
5832574 |
acatcaggccttgcagggtatctgaaggaaacatctctgagttcaatatctccctttatgtcttccaagacagcaccactggtgtcacttgcatcaatga |
5832673 |
T |
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| Q |
116 |
taggctttcttttaattgtctcgaacattttatatgctgctgcttggcctgcagcaaatgcatctaagcatggtgatgt |
194 |
Q |
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| T |
5832674 |
tgggctttcttctaattgtctcaaacattttatatgctgctgcttggcctgcagcaaatgcttgtaagcttggggatgt |
5832752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 190
Target Start/End: Complemental strand, 5822914 - 5822740
Alignment:
| Q |
16 |
acatcaggccttgcagggtaactgaaataaacatctttaagttcaatatctccctttatgtctttcaagacaataccacttgtgtcatatgcatcaattt |
115 |
Q |
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| T |
5822914 |
acatctggtcttgcagggtatctaaagtaaacatctttgagttcaatgtctccctttatgttctccattataacaccacttgtgtcataagcatcaatgt |
5822815 |
T |
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| Q |
116 |
taggctttcttttaattgtctcgaacattttatatgctgctgcttggcctgcagcaaatgcatctaagcatggtg |
190 |
Q |
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| T |
5822814 |
tcggttttcttttaattgtctcgaacatcttacatgctgctacttggcctgttgcaaatgcatttatgcatggtg |
5822740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 16 - 195
Target Start/End: Original strand, 29330098 - 29330277
Alignment:
| Q |
16 |
acatcaggccttgcagggtaactgaaataaacatctttaagttcaatatctccctttatgtctttcaagacaataccacttgtgtcatatgcatcaattt |
115 |
Q |
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||||| || ||||||||||| ||||| | ||||||| | |||||||||||||||||||| |||| ||| |||| |||||| || ||||||||||| |||| |
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| T |
29330098 |
acatctggtcttgcagggtatctgaagtgaacatctctgagttcaatatctccctttatatcttccaacacaagaccactggtatcatatgcatcgattt |
29330197 |
T |
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| Q |
116 |
taggctttcttttaattgtctcgaacattttatatgctgctgcttggcctgcagcaaatgcatctaagcatggtgatgtc |
195 |
Q |
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| T |
29330198 |
ttggctttcttttaatcgtctcaaacattttatatgctgctgctttgcctgcagcaaatgcatgtaagcttggggatgtc |
29330277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000007; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 95 - 173
Target Start/End: Complemental strand, 51199340 - 51199262
Alignment:
| Q |
95 |
ttgtgtcatatgcatcaattttaggctttcttttaattgtctcgaacattttatatgctgctgcttggcctgcagcaaa |
173 |
Q |
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| T |
51199340 |
ttgtgtcgtaagcatcaatttcgggcttccttttaatcgtttcgaacattttaaatgccgcagcttgtcctgcagcaaa |
51199262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 173
Target Start/End: Complemental strand, 51145355 - 51145273
Alignment:
| Q |
91 |
ccacttgtgtcatatgcatcaattttaggctttcttttaattgtctcgaacattttatatgctgctgcttggcctgcagcaaa |
173 |
Q |
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| T |
51145355 |
ccactagtgtcataggcatcaatttccggcttcctattaatcgtttcgaacatcttaaaggctgcagcttgtcctgcagcaaa |
51145273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 173
Target Start/End: Complemental strand, 51156496 - 51156414
Alignment:
| Q |
91 |
ccacttgtgtcatatgcatcaattttaggctttcttttaattgtctcgaacattttatatgctgctgcttggcctgcagcaaa |
173 |
Q |
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| T |
51156496 |
ccactagtgtcataagcatcaatttccggcatccttttaatcgtttcgaacatcttaaaggctgcagcttgtcctgcagcaaa |
51156414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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