View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6961_low_31 (Length: 206)

Name: NF6961_low_31
Description: NF6961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6961_low_31
NF6961_low_31
[»] chr1 (21 HSPs)
chr1 (1-187)||(3093852-3094037)
chr1 (104-154)||(41677607-41677656)
chr1 (115-156)||(19620569-19620610)
chr1 (121-157)||(47528480-47528516)
chr1 (121-156)||(9639850-9639885)
chr1 (114-157)||(37013980-37014023)
chr1 (121-156)||(52267757-52267792)
chr1 (121-155)||(18056749-18056783)
chr1 (103-153)||(34707880-34707929)
chr1 (121-155)||(38448899-38448933)
chr1 (103-156)||(6219878-6219930)
chr1 (115-156)||(16580826-16580867)
chr1 (122-159)||(27172756-27172793)
chr1 (103-156)||(30678829-30678881)
chr1 (114-155)||(39302939-39302980)
chr1 (121-150)||(49875632-49875661)
chr1 (115-155)||(8148392-8148432)
chr1 (103-155)||(10480708-10480759)
chr1 (121-149)||(28039893-28039921)
chr1 (114-150)||(30895333-30895369)
chr1 (116-152)||(50224486-50224522)
[»] chr2 (27 HSPs)
chr2 (103-156)||(7640651-7640703)
chr2 (115-156)||(29555178-29555219)
chr2 (103-154)||(10991537-10991587)
chr2 (115-156)||(1244864-1244905)
chr2 (103-156)||(8761580-8761632)
chr2 (121-161)||(18231506-18231546)
chr2 (121-156)||(7052766-7052801)
chr2 (122-156)||(18910567-18910601)
chr2 (121-155)||(19179083-19179117)
chr2 (121-155)||(24548005-24548039)
chr2 (115-157)||(27934884-27934926)
chr2 (121-155)||(35727431-35727465)
chr2 (121-155)||(41542833-41542867)
chr2 (125-154)||(1232190-1232219)
chr2 (121-150)||(2661081-2661110)
chr2 (125-154)||(7379643-7379672)
chr2 (103-148)||(11817361-11817406)
chr2 (103-156)||(12893260-12893312)
chr2 (115-151)||(4693080-4693116)
chr2 (121-149)||(4897543-4897571)
chr2 (121-149)||(4944937-4944965)
chr2 (115-151)||(10156015-10156051)
chr2 (117-149)||(12130003-12130035)
chr2 (121-149)||(18324927-18324955)
chr2 (121-156)||(26133553-26133589)
chr2 (103-150)||(36171527-36171575)
chr2 (103-147)||(43826458-43826501)
[»] chr6 (12 HSPs)
chr6 (103-155)||(8917593-8917645)
chr6 (121-156)||(9987074-9987109)
chr6 (121-156)||(8381227-8381262)
chr6 (121-156)||(24117522-24117557)
chr6 (108-150)||(3863354-3863396)
chr6 (105-158)||(13655152-13655206)
chr6 (115-149)||(28757051-28757085)
chr6 (115-156)||(6631177-6631218)
chr6 (126-155)||(7273044-7273073)
chr6 (122-155)||(13654218-13654251)
chr6 (121-157)||(788858-788894)
chr6 (123-155)||(20568326-20568358)
[»] chr3 (21 HSPs)
chr3 (121-157)||(17588354-17588390)
chr3 (103-156)||(38898225-38898277)
chr3 (115-156)||(51250260-51250301)
chr3 (115-155)||(33771684-33771724)
chr3 (121-156)||(8127456-8127491)
chr3 (103-150)||(12043112-12043159)
chr3 (115-150)||(21967555-21967590)
chr3 (115-150)||(21989991-21990026)
chr3 (121-156)||(22462305-22462340)
chr3 (121-156)||(51882233-51882268)
chr3 (108-150)||(5293947-5293989)
chr3 (121-155)||(21914104-21914138)
chr3 (115-152)||(43796864-43796901)
chr3 (121-150)||(47377382-47377411)
chr3 (103-156)||(51047185-51047238)
chr3 (103-156)||(53633633-53633685)
chr3 (121-158)||(53681910-53681947)
chr3 (121-157)||(1149102-1149138)
chr3 (103-155)||(7464507-7464558)
chr3 (121-153)||(22486679-22486711)
chr3 (115-155)||(23148005-23148045)
[»] chr5 (21 HSPs)
chr5 (103-158)||(2249432-2249486)
chr5 (103-146)||(14574286-14574328)
chr5 (121-152)||(34702487-34702518)
chr5 (103-158)||(36822330-36822385)
chr5 (121-155)||(35750255-35750289)
chr5 (114-156)||(40837929-40837971)
chr5 (103-156)||(4009859-4009912)
chr5 (114-155)||(6375517-6375558)
chr5 (125-154)||(11206787-11206816)
chr5 (121-150)||(13906717-13906746)
chr5 (115-156)||(18147582-18147623)
chr5 (121-150)||(28768794-28768823)
chr5 (115-156)||(33645716-33645757)
chr5 (104-156)||(9123862-9123913)
chr5 (121-149)||(22498942-22498970)
chr5 (115-151)||(28600994-28601030)
chr5 (103-150)||(29904419-29904466)
chr5 (115-151)||(31308670-31308706)
chr5 (115-155)||(35109394-35109434)
chr5 (121-149)||(40056623-40056651)
chr5 (106-150)||(40155210-40155254)
[»] chr7 (18 HSPs)
chr7 (103-157)||(1112463-1112517)
chr7 (115-156)||(27544950-27544991)
chr7 (121-156)||(20103487-20103522)
chr7 (121-156)||(20521064-20521099)
chr7 (56-98)||(6384893-6384935)
chr7 (114-156)||(46675899-46675941)
chr7 (115-174)||(7481203-7481259)
chr7 (103-156)||(20135177-20135230)
chr7 (115-156)||(22062440-22062481)
chr7 (121-150)||(28012647-28012676)
chr7 (115-156)||(38911292-38911333)
chr7 (115-152)||(41029269-41029306)
chr7 (115-152)||(46418558-46418595)
chr7 (115-155)||(5352323-5352363)
chr7 (58-98)||(7872727-7872767)
chr7 (103-163)||(34448626-34448685)
chr7 (114-150)||(36428147-36428183)
chr7 (103-155)||(38025134-38025186)
[»] scaffold0238 (1 HSPs)
scaffold0238 (121-154)||(25384-25417)
[»] chr8 (9 HSPs)
chr8 (103-151)||(36919309-36919356)
chr8 (115-150)||(10982725-10982760)
chr8 (121-156)||(19778058-19778093)
chr8 (115-153)||(14902007-14902045)
chr8 (64-102)||(26914056-26914094)
chr8 (115-149)||(32421569-32421603)
chr8 (111-156)||(10791537-10791582)
chr8 (120-156)||(2114880-2114916)
chr8 (123-155)||(30176583-30176615)
[»] chr4 (17 HSPs)
chr4 (115-155)||(11269688-11269728)
chr4 (123-155)||(29611420-29611452)
chr4 (103-155)||(38340336-38340387)
chr4 (121-156)||(14137043-14137078)
chr4 (121-156)||(31604326-31604361)
chr4 (103-149)||(8464091-8464136)
chr4 (121-155)||(18635524-18635558)
chr4 (123-152)||(624480-624509)
chr4 (115-156)||(7371575-7371616)
chr4 (115-159)||(10529308-10529353)
chr4 (115-156)||(20405915-20405956)
chr4 (121-150)||(29908055-29908084)
chr4 (115-156)||(51298723-51298764)
chr4 (115-156)||(54151652-54151693)
chr4 (121-149)||(19908692-19908720)
chr4 (114-150)||(24885826-24885862)
chr4 (121-157)||(29910453-29910489)
[»] scaffold0262 (1 HSPs)
scaffold0262 (115-162)||(15957-16004)
[»] scaffold0126 (1 HSPs)
scaffold0126 (121-150)||(34921-34950)
[»] scaffold0117 (1 HSPs)
scaffold0117 (115-156)||(18286-18327)


Alignment Details
Target: chr1 (Bit Score: 131; Significance: 4e-68; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 3094037 - 3093852
Alignment:
Q  1 ttttttacattatttgtaaaagatagacatagtttattacttttgttnnnnnnnntagttttcttttggtggtgtccagggttcgaactccagaccttac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||        |||||||||||||||||||||| ||||||||||||| ||||||||    
T  3094037 ttttttacattatttgtaaaagatagacatagtttattactttcgttaaaaaaaatagttttcttttggtggtgtccggggttcgaactcccgaccttac 3093938  T
Q  101 atccttacatatatttatatattgtccttaccaactgagttaagctcacggggacagtttattattatttaaaagtcgcagaaatat 187  Q
    ||||||||||||||||||  ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3093937 atccttacatatatttatgcattgtccttaccaaccgagttaagctcac-gggacagtttattattatttaaaagtcgcagaaatat 3093852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 104 - 154
Target Start/End: Original strand, 41677607 - 41677656
Alignment:
Q  104 cttacatatatttatatattgtccttaccaactgagttaagctcacgggga 154  Q
    |||||||||||| || |||||||||||||||||||| ||||||||||||||    
T  41677607 cttacatatatt-atgtattgtccttaccaactgagctaagctcacgggga 41677656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 156
Target Start/End: Complemental strand, 19620610 - 19620569
Alignment:
Q  115 ttatatattgtccttaccaactgagttaagctcacggggaca 156  Q
    |||| |||||||||||||||||||| ||||||||||||||||    
T  19620610 ttatgtattgtccttaccaactgagctaagctcacggggaca 19620569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 157
Target Start/End: Original strand, 47528480 - 47528516
Alignment:
Q  121 attgtccttaccaactgagttaagctcacggggacag 157  Q
    ||||||||||||||||||| |||||||||||||||||    
T  47528480 attgtccttaccaactgagctaagctcacggggacag 47528516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 121 - 156
Target Start/End: Original strand, 9639850 - 9639885
Alignment:
Q  121 attgtccttaccaactgagttaagctcacggggaca 156  Q
    |||||||||||||| |||||||||||||||||||||    
T  9639850 attgtccttaccaagtgagttaagctcacggggaca 9639885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 114 - 157
Target Start/End: Complemental strand, 37014023 - 37013980
Alignment:
Q  114 tttatatattgtccttaccaactgagttaagctcacggggacag 157  Q
    ||||||| |||||| |||||||||||||||||||||| ||||||    
T  37014023 tttatattttgtccctaccaactgagttaagctcacgaggacag 37013980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 121 - 156
Target Start/End: Complemental strand, 52267792 - 52267757
Alignment:
Q  121 attgtccttaccaactgagttaagctcacggggaca 156  Q
    |||||||||||||||||||||||||||||| |||||    
T  52267792 attgtccttaccaactgagttaagctcacgaggaca 52267757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 155
Target Start/End: Original strand, 18056749 - 18056783
Alignment:
Q  121 attgtccttaccaactgagttaagctcacggggac 155  Q
    |||||||||||||||||||||||||| ||||||||    
T  18056749 attgtccttaccaactgagttaagcttacggggac 18056783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 34707880 - 34707929
Alignment:
Q  103 ccttacatatatttatatattgtccttaccaactgagttaagctcacgggg 153  Q
    |||||||||| |||||  |||||||||||||||||||||| ||||||||||    
T  34707880 ccttacatat-tttatgcattgtccttaccaactgagttatgctcacgggg 34707929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 155
Target Start/End: Original strand, 38448899 - 38448933
Alignment:
Q  121 attgtccttaccaactgagttaagctcacggggac 155  Q
    ||||||||||||||||||| |||||||||||||||    
T  38448899 attgtccttaccaactgagctaagctcacggggac 38448933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 103 - 156
Target Start/End: Original strand, 6219878 - 6219930
Alignment:
Q  103 ccttacatatatttatatattgtccttaccaactgagttaagctcacggggaca 156  Q
    ||||||||||||| || |||||||| ||||||| |||||||||||||| |||||    
T  6219878 ccttacatatatt-atgtattgtccctaccaaccgagttaagctcacgaggaca 6219930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 156
Target Start/End: Original strand, 16580826 - 16580867
Alignment:
Q  115 ttatatattgtccttaccaactgagttaagctcacggggaca 156  Q
    ||||| ||||||| |||||||||| |||||||||||||||||    
T  16580826 ttatacattgtccataccaactgaattaagctcacggggaca 16580867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 122 - 159
Target Start/End: Original strand, 27172756 - 27172793
Alignment:
Q  122 ttgtccttaccaactgagttaagctcacggggacagtt 159  Q
    |||||| |||||||||||||||||||||| ||||||||    
T  27172756 ttgtccataccaactgagttaagctcacgaggacagtt 27172793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 103 - 156
Target Start/End: Original strand, 30678829 - 30678881
Alignment:
Q  103 ccttacatatatttatatattgtccttaccaactgagttaagctcacggggaca 156  Q
    ||||||||||||| ||  ||||||| |||||||||||||||||||||| |||||    
T  30678829 ccttacatatatt-atgcattgtccctaccaactgagttaagctcacgaggaca 30678881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 114 - 155
Target Start/End: Complemental strand, 39302980 - 39302939
Alignment:
Q  114 tttatatattgtccttaccaactgagttaagctcacggggac 155  Q
    ||||| |||||||||||||||||||| || ||||||||||||    
T  39302980 tttatgtattgtccttaccaactgagctatgctcacggggac 39302939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 121 - 150
Target Start/End: Original strand, 49875632 - 49875661
Alignment:
Q  121 attgtccttaccaactgagttaagctcacg 150  Q
    ||||||||||||||||||||||||||||||    
T  49875632 attgtccttaccaactgagttaagctcacg 49875661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 155
Target Start/End: Original strand, 8148392 - 8148432
Alignment:
Q  115 ttatatattgtccttaccaactgagttaagctcacggggac 155  Q
    |||| |||||| ||||||||||||| |||||||||||||||    
T  8148392 ttatgtattgttcttaccaactgagctaagctcacggggac 8148432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 155
Target Start/End: Complemental strand, 10480759 - 10480708
Alignment:
Q  103 ccttacatatatttatatattgtccttaccaactgagttaagctcacggggac 155  Q
    ||||||||||||| ||  ||||||||||||| |||||||||||||||| ||||    
T  10480759 ccttacatatatt-atgcattgtccttaccatctgagttaagctcacgaggac 10480708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 149
Target Start/End: Original strand, 28039893 - 28039921
Alignment:
Q  121 attgtccttaccaactgagttaagctcac 149  Q
    |||||||||||||||||||||||||||||    
T  28039893 attgtccttaccaactgagttaagctcac 28039921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 150
Target Start/End: Complemental strand, 30895369 - 30895333
Alignment:
Q  114 tttatatattgtccttaccaactgagttaagctcacg 150  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  30895369 tttatgtattgtccataccaactgagttaagctcacg 30895333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 50224522 - 50224486
Alignment:
Q  116 tatatattgtccttaccaactgagttaagctcacggg 152  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  50224522 tatatattgtacttaccaactgagctaagctcacggg 50224486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 156
Target Start/End: Complemental strand, 7640703 - 7640651
Alignment:
Q  103 ccttacatatatttatatattgtccttaccaactgagttaagctcacggggaca 156  Q
    ||||||||||||| || ||||||||||||||| |||||||||||||||||||||    
T  7640703 ccttacatatatt-atgtattgtccttaccaattgagttaagctcacggggaca 7640651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 156
Target Start/End: Original strand, 29555178 - 29555219
Alignment:
Q  115 ttatatattgtccttaccaactgagttaagctcacggggaca 156  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  29555178 ttatatattgtctttaccaactgagttaagctcacggggaca 29555219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 154
Target Start/End: Complemental strand, 10991587 - 10991537
Alignment:
Q  103 ccttacatatatttatatattgtccttaccaactgagttaagctcacgggga 154  Q
    ||||||||||||| || ||||||||||||||||||||||||||||| |||||    
T  10991587 ccttacatatatt-atgtattgtccttaccaactgagttaagctcatgggga 10991537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 156
Target Start/End: Original strand, 1244864 - 1244905
Alignment:
Q  115 ttatatattgtccttaccaactgagttaagctcacggggaca 156  Q
    ||||||||||||| |||||||||||||||||||||| |||||    
T  1244864 ttatatattgtccgtaccaactgagttaagctcacgaggaca 1244905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 156
Target Start/End: Original strand, 8761580 - 8761632
Alignment:
Q  103 ccttacatatatttatatattgtccttaccaactgagttaagctcacggggaca 156  Q
    ||||||||||||| || |||||||| |||||||||||||||||||||| |||||    
T  8761580 ccttacatatatt-atgtattgtccataccaactgagttaagctcacgaggaca 8761632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 161
Target Start/End: Original strand, 18231506 - 18231546
Alignment:
Q  121 attgtccttaccaactgagttaagctcacggggacagttta 161  Q
    ||||||||||||||||||| ||||||||||||||| |||||    
T  18231506 attgtccttaccaactgagctaagctcacggggaccgttta 18231546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 121 - 156
Target Start/End: Complemental strand, 7052801 - 7052766
Alignment:
Q  121 attgtccttaccaactgagttaagctcacggggaca 156  Q
    ||||||||||||||||||| ||||||||||||||||    
T  7052801 attgtccttaccaactgagctaagctcacggggaca 7052766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 156
Target Start/End: Original strand, 18910567 - 18910601
Alignment:
Q  122 ttgtccttaccaactgagttaagctcacggggaca 156  Q
    |||||||||||||||||| ||||||||||||||||    
T  18910567 ttgtccttaccaactgagataagctcacggggaca 18910601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 155
Target Start/End: Original strand, 19179083 - 19179117
Alignment:
Q  121 attgtccttaccaactgagttaagctcacggggac 155  Q
    ||||||||||||||||||| |||||||||||||||    
T  19179083 attgtccttaccaactgagctaagctcacggggac 19179117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 155
Target Start/End: Complemental strand, 24548039 - 24548005
Alignment:
Q  121 attgtccttaccaactgagttaagctcacggggac 155  Q
    ||||||||||||||||||| |||||||||||||||    
T  24548039 attgtccttaccaactgagctaagctcacggggac 24548005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 157
Target Start/End: Original strand, 27934884 - 27934926
Alignment:
Q  115 ttatatattgtccttaccaactgagttaagctcacggggacag 157  Q
    |||| |||||||||||||||||||| |||||||||| ||||||    
T  27934884 ttatgtattgtccttaccaactgagctaagctcacgaggacag 27934926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 155
Target Start/End: Complemental strand, 35727465 - 35727431
Alignment:
Q  121 attgtccttaccaactgagttaagctcacggggac 155  Q
    ||||| |||||||||||||||||||||||||||||    
T  35727465 attgttcttaccaactgagttaagctcacggggac 35727431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 155
Target Start/End: Original strand, 41542833 - 41542867
Alignment:
Q  121 attgtccttaccaactgagttaagctcacggggac 155  Q
    |||||||||||||||||||||||||||||| ||||    
T  41542833 attgtccttaccaactgagttaagctcacgaggac 41542867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 154
Target Start/End: Complemental strand, 1232219 - 1232190
Alignment:
Q  125 tccttaccaactgagttaagctcacgggga 154  Q
    ||||||||||||||||||||||||||||||    
T  1232219 tccttaccaactgagttaagctcacgggga 1232190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 121 - 150
Target Start/End: Original strand, 2661081 - 2661110
Alignment:
Q  121 attgtccttaccaactgagttaagctcacg 150  Q
    ||||||||||||||||||||||||||||||    
T  2661081 attgtccttaccaactgagttaagctcacg 2661110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 154
Target Start/End: Original strand, 7379643 - 7379672
Alignment:
Q  125 tccttaccaactgagttaagctcacgggga 154  Q
    ||||||||||||||||||||||||||||||    
T  7379643 tccttaccaactgagttaagctcacgggga 7379672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 103 - 148
Target Start/End: Original strand, 11817361 - 11817406
Alignment:
Q  103 ccttacatatatttatatattgtccttaccaactgagttaagctca 148  Q
    ||||||||||  ||||| ||||||| ||||||||||||||||||||    
T  11817361 ccttacatattattatacattgtccataccaactgagttaagctca 11817406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 103 - 156
Target Start/End: Original strand, 12893260 - 12893312
Alignment:
Q  103 ccttacatatatttatatattgtccttaccaactgagttaagctcacggggaca 156  Q
    ||||||||||||| ||| ||||| |||| |||||||| ||||||||||||||||    
T  12893260 ccttacatatatt-atacattgttcttatcaactgagctaagctcacggggaca 12893312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 151
Target Start/End: Complemental strand, 4693116 - 4693080
Alignment:
Q  115 ttatatattgtccttaccaactgagttaagctcacgg 151  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  4693116 ttatatattgtccttatcaactgagttaagttcacgg 4693080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 149
Target Start/End: Complemental strand, 4897571 - 4897543
Alignment:
Q  121 attgtccttaccaactgagttaagctcac 149  Q
    |||||||||||||||||||||||||||||    
T  4897571 attgtccttaccaactgagttaagctcac 4897543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 149
Target Start/End: Complemental strand, 4944965 - 4944937
Alignment:
Q  121 attgtccttaccaactgagttaagctcac 149  Q
    |||||||||||||||||||||||||||||    
T  4944965 attgtccttaccaactgagttaagctcac 4944937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 151
Target Start/End: Complemental strand, 10156051 - 10156015
Alignment:
Q  115 ttatatattgtccttaccaactgagttaagctcacgg 151  Q
    |||| |||||||||||||||||||| |||||||||||    
T  10156051 ttatgtattgtccttaccaactgagctaagctcacgg 10156015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 149
Target Start/End: Original strand, 12130003 - 12130035
Alignment:
Q  117 atatattgtccttaccaactgagttaagctcac 149  Q
    |||||||||||||||||| ||||||||||||||    
T  12130003 atatattgtccttaccaattgagttaagctcac 12130035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 149
Target Start/End: Original strand, 18324927 - 18324955
Alignment:
Q  121 attgtccttaccaactgagttaagctcac 149  Q
    |||||||||||||||||||||||||||||    
T  18324927 attgtccttaccaactgagttaagctcac 18324955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 156
Target Start/End: Original strand, 26133553 - 26133589
Alignment:
Q  121 attgtccttaccaactgagttaagctc-acggggaca 156  Q
    ||||||||||||||||||||||||||| |||||||||    
T  26133553 attgtccttaccaactgagttaagctcaacggggaca 26133589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 150
Target Start/End: Complemental strand, 36171575 - 36171527
Alignment:
Q  103 ccttacatatat-ttatatattgtccttaccaactgagttaagctcacg 150  Q
    |||| ||||||| |||| |||||||| ||||||||||||||||||||||    
T  36171575 ccttgcatatatattatgtattgtccctaccaactgagttaagctcacg 36171527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 43826458 - 43826501
Alignment:
Q  103 ccttacatatatttatatattgtccttaccaactgagttaagctc 147  Q
    ||||||||||||| || |||||||||||||||||||| |||||||    
T  43826458 ccttacatatatt-atgtattgtccttaccaactgagctaagctc 43826501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 103 - 155
Target Start/End: Complemental strand, 8917645 - 8917593
Alignment:
Q  103 ccttacatatatttatatattgtccttaccaactgagttaagctcacggggac 155  Q
    ||||||||||||| || |||||||||||| |||||||||||||||||| ||||    
T  8917645 ccttacatatattaatgtattgtccttactaactgagttaagctcacgaggac 8917593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 156
Target Start/End: Complemental strand, 9987109 - 9987074
Alignment:
Q  121 attgtccttaccaactgagttaagctcacggggaca 156  Q
    ||||||||||||||||||||||||||||||||||||    
T  9987109 attgtccttaccaactgagttaagctcacggggaca 9987074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 121 - 156
Target Start/End: Original strand, 8381227 - 8381262
Alignment:
Q  121 attgtccttaccaactgagttaagctcacggggaca 156  Q
    |||||| |||||||||||||||||||||||||||||    
T  8381227 attgtctttaccaactgagttaagctcacggggaca 8381262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 121 - 156
Target Start/End: Original strand, 24117522 - 24117557
Alignment:
Q  121 attgtccttaccaactgagttaagctcacggggaca 156  Q
    |||||||||| |||||||||||||||||||||||||    
T  24117522 attgtccttatcaactgagttaagctcacggggaca 24117557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 150
Target Start/End: Original strand, 3863354 - 3863396
Alignment:
Q  108 catatatttatatattgtccttaccaactgagttaagctcacg 150  Q
    |||||||| ||  ||||||||||||||||||||||||||||||    
T  3863354 catatattaatgcattgtccttaccaactgagttaagctcacg 3863396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 158
Target Start/End: Complemental strand, 13655206 - 13655152
Alignment:
Q  105 ttacatatat-ttatatattgtccttaccaactgagttaagctcacggggacagt 158  Q
    |||||||||| ||||  |||||||||||||||||||||||  |||||||||||||    
T  13655206 ttacatatatattatgcattgtccttaccaactgagttaatttcacggggacagt 13655152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 149
Target Start/End: Original strand, 28757051 - 28757085
Alignment:
Q  115 ttatatattgtccttaccaactgagttaagctcac 149  Q
    ||||| |||||||||||||||||||||||||||||    
T  28757051 ttatacattgtccttaccaactgagttaagctcac 28757085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 156
Target Start/End: Original strand, 6631177 - 6631218
Alignment:
Q  115 ttatatattgtccttaccaactgagttaagctcacggggaca 156  Q
    ||||| |||||||||||||| |||| ||||||||||||||||    
T  6631177 ttatacattgtccttaccaattgagctaagctcacggggaca 6631218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 126 - 155
Target Start/End: Complemental strand, 7273073 - 7273044
Alignment:
Q  126 ccttaccaactgagttaagctcacggggac 155  Q
    ||||||||||||||||||||||||||||||    
T  7273073 ccttaccaactgagttaagctcacggggac 7273044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 122 - 155
Target Start/End: Complemental strand, 13654251 - 13654218
Alignment:
Q  122 ttgtccttaccaactgagttaagctcacggggac 155  Q
    ||||||||||||||||||||||||||||| ||||    
T  13654251 ttgtccttaccaactgagttaagctcacgaggac 13654218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 157
Target Start/End: Complemental strand, 788894 - 788858
Alignment:
Q  121 attgtccttaccaactgagttaagctcacggggacag 157  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  788894 attgtccttaccaactgagataagctcacgaggacag 788858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 20568326 - 20568358
Alignment:
Q  123 tgtccttaccaactgagttaagctcacggggac 155  Q
    ||||||||||||||||| |||||||||||||||    
T  20568326 tgtccttaccaactgagctaagctcacggggac 20568358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 157
Target Start/End: Complemental strand, 17588390 - 17588354
Alignment:
Q  121 attgtccttaccaactgagttaagctcacggggacag 157  Q
    |||||||||||||||||||||||||||||||||||||    
T  17588390 attgtccttaccaactgagttaagctcacggggacag 17588354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 156
Target Start/End: Original strand, 38898225 - 38898277
Alignment:
Q  103 ccttacatatatttatatattgtccttaccaactgagttaagctcacggggaca 156  Q
    ||||||||||||| ||| ||||||||||||||||||| ||||||||| ||||||    
T  38898225 ccttacatatatt-atacattgtccttaccaactgagataagctcacagggaca 38898277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 156
Target Start/End: Original strand, 51250260 - 51250301
Alignment:
Q  115 ttatatattgtccttaccaactgagttaagctcacggggaca 156  Q
    ||||| |||||||||||||||||||||||||||||| |||||    
T  51250260 ttatacattgtccttaccaactgagttaagctcacgaggaca 51250301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 33771724 - 33771684
Alignment:
Q  115 ttatatattgtccttaccaactgagttaagctcacggggac 155  Q
    ||||| |||||||||||||||||||||||||||||| ||||    
T  33771724 ttatacattgtccttaccaactgagttaagctcacgaggac 33771684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 121 - 156
Target Start/End: Complemental strand, 8127491 - 8127456
Alignment:
Q  121 attgtccttaccaactgagttaagctcacggggaca 156  Q
    |||||||||||||||||||||||||||||| |||||    
T  8127491 attgtccttaccaactgagttaagctcacgaggaca 8127456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 103 - 150
Target Start/End: Original strand, 12043112 - 12043159
Alignment:
Q  103 ccttacatatatttatatattgtccttaccaactgagttaagctcacg 150  Q
    |||| |||||||| ||  ||||||||||||||||||||||||||||||    
T  12043112 ccttgcatatattaatgcattgtccttaccaactgagttaagctcacg 12043159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 115 - 150
Target Start/End: Complemental strand, 21967590 - 21967555
Alignment:
Q  115 ttatatattgtccttaccaactgagttaagctcacg 150  Q
    ||||| ||||||||||||||||||||||||||||||    
T  21967590 ttatacattgtccttaccaactgagttaagctcacg 21967555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 115 - 150
Target Start/End: Complemental strand, 21990026 - 21989991
Alignment:
Q  115 ttatatattgtccttaccaactgagttaagctcacg 150  Q
    ||||| ||||||||||||||||||||||||||||||    
T  21990026 ttatacattgtccttaccaactgagttaagctcacg 21989991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 121 - 156
Target Start/End: Complemental strand, 22462340 - 22462305
Alignment:
Q  121 attgtccttaccaactgagttaagctcacggggaca 156  Q
    |||||||||| |||||||||||||||||||||||||    
T  22462340 attgtccttatcaactgagttaagctcacggggaca 22462305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 121 - 156
Target Start/End: Original strand, 51882233 - 51882268
Alignment:
Q  121 attgtccttaccaactgagttaagctcacggggaca 156  Q
    ||||||| ||||||||||||||||||||||||||||    
T  51882233 attgtccataccaactgagttaagctcacggggaca 51882268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 150
Target Start/End: Original strand, 5293947 - 5293989
Alignment:
Q  108 catatatttatatattgtccttaccaactgagttaagctcacg 150  Q
    |||||||||||  ||||||| ||||||||||||||||||||||    
T  5293947 catatatttatgcattgtccgtaccaactgagttaagctcacg 5293989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 155
Target Start/End: Original strand, 21914104 - 21914138
Alignment:
Q  121 attgtccttaccaactgagttaagctcacggggac 155  Q
    |||||||||||||||||||||||||||| ||||||    
T  21914104 attgtccttaccaactgagttaagctcatggggac 21914138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 152
Target Start/End: Original strand, 43796864 - 43796901
Alignment:
Q  115 ttatatattgtccttaccaactgagttaagctcacggg 152  Q
    ||||| ||||||| ||||||||||||||||||||||||    
T  43796864 ttatacattgtccataccaactgagttaagctcacggg 43796901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 121 - 150
Target Start/End: Original strand, 47377382 - 47377411
Alignment:
Q  121 attgtccttaccaactgagttaagctcacg 150  Q
    ||||||||||||||||||||||||||||||    
T  47377382 attgtccttaccaactgagttaagctcacg 47377411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 103 - 156
Target Start/End: Original strand, 51047185 - 51047238
Alignment:
Q  103 ccttacatatatttatatattgtccttaccaactgagttaagctcacggggaca 156  Q
    ||||||||||  ||||| ||||||| |||||||| || ||||||||||||||||    
T  51047185 ccttacatattattatacattgtccataccaactaaggtaagctcacggggaca 51047238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 103 - 156
Target Start/End: Original strand, 53633633 - 53633685
Alignment:
Q  103 ccttacatatatttatatattgtccttaccaactgagttaagctcacggggaca 156  Q
    ||||||||||||| ||  ||| |||||||||||||||||||||||||| |||||    
T  53633633 ccttacatatatt-atgcattatccttaccaactgagttaagctcacgaggaca 53633685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 121 - 158
Target Start/End: Original strand, 53681910 - 53681947
Alignment:
Q  121 attgtccttaccaactgagttaagctcacggggacagt 158  Q
    ||||| ||||||||||||| ||||||||||||||||||    
T  53681910 attgttcttaccaactgaggtaagctcacggggacagt 53681947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 157
Target Start/End: Original strand, 1149102 - 1149138
Alignment:
Q  121 attgtccttaccaactgagttaagctcacggggacag 157  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  1149102 attgtccttaccaactgagctaagctcacgaggacag 1149138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 155
Target Start/End: Original strand, 7464507 - 7464558
Alignment:
Q  103 ccttacatatatttatatattgtccttaccaactgagttaagctcacggggac 155  Q
    ||||||||||||| ||  ||||||| |||||||||||||||||||||| ||||    
T  7464507 ccttacatatatt-atgcattgtccctaccaactgagttaagctcacgaggac 7464558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 153
Target Start/End: Complemental strand, 22486711 - 22486679
Alignment:
Q  121 attgtccttaccaactgagttaagctcacgggg 153  Q
    ||||| |||||||||||||||||||||||||||    
T  22486711 attgttcttaccaactgagttaagctcacgggg 22486679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 155
Target Start/End: Original strand, 23148005 - 23148045
Alignment:
Q  115 ttatatattgtccttaccaactgagttaagctcacggggac 155  Q
    |||| |||||||||||||||||||| ||||||||| |||||    
T  23148005 ttatgtattgtccttaccaactgagctaagctcacagggac 23148045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 158
Target Start/End: Original strand, 2249432 - 2249486
Alignment:
Q  103 ccttacatatatttatatattgtccttaccaactgagttaagctcacggggacagt 158  Q
    ||||||||||||| || |||||||||||| |||||||||||||||||| |||||||    
T  2249432 ccttacatatatt-atgtattgtccttactaactgagttaagctcacgaggacagt 2249486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 103 - 146
Target Start/End: Original strand, 14574286 - 14574328
Alignment:
Q  103 ccttacatatatttatatattgtccttaccaactgagttaagct 146  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||    
T  14574286 ccttacatatatt-atatattgtacttaccaactgagttaagct 14574328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 121 - 152
Target Start/End: Complemental strand, 34702518 - 34702487
Alignment:
Q  121 attgtccttaccaactgagttaagctcacggg 152  Q
    ||||||||||||||||||||||||||||||||    
T  34702518 attgtccttaccaactgagttaagctcacggg 34702487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 103 - 158
Target Start/End: Original strand, 36822330 - 36822385
Alignment:
Q  103 ccttacatatatttatatattgtccttaccaactgagttaagctcacggggacagt 158  Q
    |||| |||||||| ||  |||||||||||||| ||||||||||||||| |||||||    
T  36822330 ccttgcatatattaatgcattgtccttaccaattgagttaagctcacgaggacagt 36822385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 155
Target Start/End: Complemental strand, 35750289 - 35750255
Alignment:
Q  121 attgtccttaccaactgagttaagctcacggggac 155  Q
    |||||||||||||||||||||| ||||||||||||    
T  35750289 attgtccttaccaactgagttatgctcacggggac 35750255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 156
Target Start/End: Original strand, 40837929 - 40837971
Alignment:
Q  114 tttatatattgtccttaccaactgagttaagctcacggggaca 156  Q
    |||||||||||||| |||||||||||||||| ||||| |||||    
T  40837929 tttatatattgtccataccaactgagttaagttcacgaggaca 40837971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 103 - 156
Target Start/End: Complemental strand, 4009912 - 4009859
Alignment:
Q  103 ccttacatatatttatatattgtccttaccaactgagttaagctcacggggaca 156  Q
    |||| |||||||| ||  ||||||||||||||||||| |||||||||| |||||    
T  4009912 ccttgcatatattaatgcattgtccttaccaactgagctaagctcacgaggaca 4009859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 114 - 155
Target Start/End: Complemental strand, 6375558 - 6375517
Alignment:
Q  114 tttatatattgtccttaccaactgagttaagctcacggggac 155  Q
    ||||| |||||||||||||||||||| |||||||||| ||||    
T  6375558 tttatgtattgtccttaccaactgagctaagctcacgtggac 6375517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 154
Target Start/End: Original strand, 11206787 - 11206816
Alignment:
Q  125 tccttaccaactgagttaagctcacgggga 154  Q
    ||||||||||||||||||||||||||||||    
T  11206787 tccttaccaactgagttaagctcacgggga 11206816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 121 - 150
Target Start/End: Original strand, 13906717 - 13906746
Alignment:
Q  121 attgtccttaccaactgagttaagctcacg 150  Q
    ||||||||||||||||||||||||||||||    
T  13906717 attgtccttaccaactgagttaagctcacg 13906746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 156
Target Start/End: Original strand, 18147582 - 18147623
Alignment:
Q  115 ttatatattgtccttaccaactgagttaagctcacggggaca 156  Q
    ||||| |||||||||| ||||||||||||||||||| |||||    
T  18147582 ttatacattgtccttatcaactgagttaagctcacgtggaca 18147623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 121 - 150
Target Start/End: Complemental strand, 28768823 - 28768794
Alignment:
Q  121 attgtccttaccaactgagttaagctcacg 150  Q
    ||||||||||||||||||||||||||||||    
T  28768823 attgtccttaccaactgagttaagctcacg 28768794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 156
Target Start/End: Original strand, 33645716 - 33645757
Alignment:
Q  115 ttatatattgtccttaccaactgagttaagctcacggggaca 156  Q
    ||||| ||||||| |||||||||||||||||||||| |||||    
T  33645716 ttatacattgtccataccaactgagttaagctcacgaggaca 33645757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 156
Target Start/End: Original strand, 9123862 - 9123913
Alignment:
Q  104 cttacatatatttatatattgtccttaccaactgagttaagctcacggggaca 156  Q
    |||||||||||| ||  |||||| |||||||||||||||||||||| ||||||    
T  9123862 cttacatatatt-atgcattgtctttaccaactgagttaagctcacagggaca 9123913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 149
Target Start/End: Complemental strand, 22498970 - 22498942
Alignment:
Q  121 attgtccttaccaactgagttaagctcac 149  Q
    |||||||||||||||||||||||||||||    
T  22498970 attgtccttaccaactgagttaagctcac 22498942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 151
Target Start/End: Complemental strand, 28601030 - 28600994
Alignment:
Q  115 ttatatattgtccttaccaactgagttaagctcacgg 151  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  28601030 ttatacattgtccttaccaactgagttaagctaacgg 28600994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 150
Target Start/End: Complemental strand, 29904466 - 29904419
Alignment:
Q  103 ccttacatatatttatatattgtcctta-ccaactgagttaagctcacg 150  Q
    ||||||||||||| || ||||||||||| ||||||||||||||||||||    
T  29904466 ccttacatatatt-atgtattgtccttaaccaactgagttaagctcacg 29904419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 151
Target Start/End: Original strand, 31308670 - 31308706
Alignment:
Q  115 ttatatattgtccttaccaactgagttaagctcacgg 151  Q
    |||||||||||| |||||||||||| |||||||||||    
T  31308670 ttatatattgtctttaccaactgagctaagctcacgg 31308706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 35109434 - 35109394
Alignment:
Q  115 ttatatattgtccttaccaactgagttaagctcacggggac 155  Q
    |||| ||||||| ||||||||||||||||||||||| ||||    
T  35109434 ttatgtattgtctttaccaactgagttaagctcacgtggac 35109394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 149
Target Start/End: Original strand, 40056623 - 40056651
Alignment:
Q  121 attgtccttaccaactgagttaagctcac 149  Q
    |||||||||||||||||||||||||||||    
T  40056623 attgtccttaccaactgagttaagctcac 40056651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 150
Target Start/End: Original strand, 40155210 - 40155254
Alignment:
Q  106 tacatatatttatatattgtccttaccaactgagttaagctcacg 150  Q
    ||||||| |||||| ||||||| ||||||||||| ||||||||||    
T  40155210 tacatatttttatacattgtccataccaactgagataagctcacg 40155254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000007; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 103 - 157
Target Start/End: Complemental strand, 1112517 - 1112463
Alignment:
Q  103 ccttacatatatttatatattgtccttaccaactgagttaagctcacggggacag 157  Q
    |||||||||| |||||||||| ||| || ||||||||||||||||||||| ||||    
T  1112517 ccttacatatgtttatatattatccctatcaactgagttaagctcacgggaacag 1112463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 156
Target Start/End: Complemental strand, 27544991 - 27544950
Alignment:
Q  115 ttatatattgtccttaccaactgagttaagctcacggggaca 156  Q
    ||||| ||||||||||||||||||| ||||||||||||||||    
T  27544991 ttatacattgtccttaccaactgagataagctcacggggaca 27544950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 121 - 156
Target Start/End: Original strand, 20103487 - 20103522
Alignment:
Q  121 attgtccttaccaactgagttaagctcacggggaca 156  Q
    ||||||||||||||||||||||||||||||| ||||    
T  20103487 attgtccttaccaactgagttaagctcacggagaca 20103522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 121 - 156
Target Start/End: Original strand, 20521064 - 20521099
Alignment:
Q  121 attgtccttaccaactgagttaagctcacggggaca 156  Q
    ||||||||||||||||||| ||||||||||||||||    
T  20521064 attgtccttaccaactgagctaagctcacggggaca 20521099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 98
Target Start/End: Complemental strand, 6384935 - 6384893
Alignment:
Q  56 tagttttcttttggtggtgtccagggttcgaactccagacctt 98  Q
    ||||||| ||||||||||||| ||||||||||| |||||||||    
T  6384935 tagtttttttttggtggtgtctagggttcgaaccccagacctt 6384893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 156
Target Start/End: Complemental strand, 46675941 - 46675899
Alignment:
Q  114 tttatatattgtccttaccaactgagttaagctcacggggaca 156  Q
    |||||| |||||||||||||||||||||| ||||||| |||||    
T  46675941 tttatacattgtccttaccaactgagttacgctcacgaggaca 46675899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 174
Target Start/End: Complemental strand, 7481259 - 7481203
Alignment:
Q  115 ttatatattgtccttaccaactgagttaagctcacggggacagtttattattatttaaaa 174  Q
    |||| ||||||| ||||||||||||||||||||| |||   | |||||||||||||||||    
T  7481259 ttatgtattgtctttaccaactgagttaagctcagggg---aatttattattatttaaaa 7481203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 103 - 156
Target Start/End: Original strand, 20135177 - 20135230
Alignment:
Q  103 ccttacatatatttatatattgtccttaccaactgagttaagctcacggggaca 156  Q
    |||| |||||||||||| |||||| ||| |||||||| |||||||||| |||||    
T  20135177 ccttgcatatatttatacattgtctttatcaactgagctaagctcacgaggaca 20135230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 156
Target Start/End: Original strand, 22062440 - 22062481
Alignment:
Q  115 ttatatattgtccttaccaactgagttaagctcacggggaca 156  Q
    |||| ||||||||||||||| ||||||||||||||| |||||    
T  22062440 ttatgtattgtccttaccaattgagttaagctcacgaggaca 22062481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 121 - 150
Target Start/End: Original strand, 28012647 - 28012676
Alignment:
Q  121 attgtccttaccaactgagttaagctcacg 150  Q
    ||||||||||||||||||||||||||||||    
T  28012647 attgtccttaccaactgagttaagctcacg 28012676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 156
Target Start/End: Complemental strand, 38911333 - 38911292
Alignment:
Q  115 ttatatattgtccttaccaactgagttaagctcacggggaca 156  Q
    ||||| |||||| ||| |||||||||||||||||||||||||    
T  38911333 ttatacattgtctttatcaactgagttaagctcacggggaca 38911292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 152
Target Start/End: Complemental strand, 41029306 - 41029269
Alignment:
Q  115 ttatatattgtccttaccaactgagttaagctcacggg 152  Q
    ||||| ||||||||||||||||||| ||||||||||||    
T  41029306 ttatacattgtccttaccaactgagctaagctcacggg 41029269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 152
Target Start/End: Original strand, 46418558 - 46418595
Alignment:
Q  115 ttatatattgtccttaccaactgagttaagctcacggg 152  Q
    ||||| ||||| ||||||||||||||||||||||||||    
T  46418558 ttatacattgttcttaccaactgagttaagctcacggg 46418595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 5352363 - 5352323
Alignment:
Q  115 ttatatattgtccttaccaactgagttaagctcacggggac 155  Q
    |||| |||||||||||||||||||| |||||||||| ||||    
T  5352363 ttatgtattgtccttaccaactgagctaagctcacgaggac 5352323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 98
Target Start/End: Original strand, 7872727 - 7872767
Alignment:
Q  58 gttttcttttggtggtgtccagggttcgaactccagacctt 98  Q
    ||||| |||||||||||||| |||||||||| |||||||||    
T  7872727 gttttgttttggtggtgtcctgggttcgaaccccagacctt 7872767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 163
Target Start/End: Original strand, 34448626 - 34448685
Alignment:
Q  103 ccttacatatatttatatattgtccttaccaactgagttaagctcacggggacagtttatt 163  Q
    ||||||||||||| ||  |||||||  ||||||||||||||||||||| ||||| ||||||    
T  34448626 ccttacatatatt-atgcattgtccaaaccaactgagttaagctcacgaggacattttatt 34448685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 150
Target Start/End: Complemental strand, 36428183 - 36428147
Alignment:
Q  114 tttatatattgtccttaccaactgagttaagctcacg 150  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  36428183 tttatacattgtccataccaactgagttaagctcacg 36428147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 155
Target Start/End: Original strand, 38025134 - 38025186
Alignment:
Q  103 ccttacatatatttatatattgtccttaccaactgagttaagctcacggggac 155  Q
    |||||||||| |||||  ||| ||| |||||||||||||||||||||| ||||    
T  38025134 ccttacatatttttattcattatccataccaactgagttaagctcacgaggac 38025186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 154
Target Start/End: Complemental strand, 25417 - 25384
Alignment:
Q  121 attgtccttaccaactgagttaagctcacgggga 154  Q
    ||||||||||||||||||||||||||||||||||    
T  25417 attgtccttaccaactgagttaagctcacgggga 25384  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 151
Target Start/End: Complemental strand, 36919356 - 36919309
Alignment:
Q  103 ccttacatatatttatatattgtccttaccaactgagttaagctcacgg 151  Q
    ||||||||||||| ||| ||||| |||||||||||||||||||||||||    
T  36919356 ccttacatatatt-atacattgttcttaccaactgagttaagctcacgg 36919309  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 115 - 150
Target Start/End: Complemental strand, 10982760 - 10982725
Alignment:
Q  115 ttatatattgtccttaccaactgagttaagctcacg 150  Q
    ||||||||||||| ||||||||||||||||||||||    
T  10982760 ttatatattgtccataccaactgagttaagctcacg 10982725  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 121 - 156
Target Start/End: Complemental strand, 19778093 - 19778058
Alignment:
Q  121 attgtccttaccaactgagttaagctcacggggaca 156  Q
    ||||||||||||||||||| ||||||||||||||||    
T  19778093 attgtccttaccaactgagctaagctcacggggaca 19778058  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 153
Target Start/End: Complemental strand, 14902045 - 14902007
Alignment:
Q  115 ttatatattgtccttaccaactgagttaagctcacgggg 153  Q
    ||||| || ||||||||||||||||||||||||||||||    
T  14902045 ttatacatcgtccttaccaactgagttaagctcacgggg 14902007  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 102
Target Start/End: Original strand, 26914056 - 26914094
Alignment:
Q  64 ttttggtggtgtccagggttcgaactccagaccttacat 102  Q
    ||||||||||| ||||||||||||| |||||||||||||    
T  26914056 ttttggtggtgaccagggttcgaaccccagaccttacat 26914094  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 149
Target Start/End: Complemental strand, 32421603 - 32421569
Alignment:
Q  115 ttatatattgtccttaccaactgagttaagctcac 149  Q
    ||||||||||||| |||||||||||||||||||||    
T  32421603 ttatatattgtccataccaactgagttaagctcac 32421569  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 111 - 156
Target Start/End: Complemental strand, 10791582 - 10791537
Alignment:
Q  111 atatttatatattgtccttaccaactgagttaagctcacggggaca 156  Q
    |||||||| |||||||||||||| ||||| ||||||||||| ||||    
T  10791582 atatttatgtattgtccttaccagctgagctaagctcacggtgaca 10791537  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 156
Target Start/End: Complemental strand, 2114916 - 2114880
Alignment:
Q  120 tattgtccttaccaactgagttaagctcacggggaca 156  Q
    |||||||  ||||||||||||||||||||||||||||    
T  2114916 tattgtctctaccaactgagttaagctcacggggaca 2114880  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 30176583 - 30176615
Alignment:
Q  123 tgtccttaccaactgagttaagctcacggggac 155  Q
    ||||||||||||||||| |||||||||||||||    
T  30176583 tgtccttaccaactgagctaagctcacggggac 30176615  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 11269728 - 11269688
Alignment:
Q  115 ttatatattgtccttaccaactgagttaagctcacggggac 155  Q
    |||| ||||||||||||||||| ||||||||||||||||||    
T  11269728 ttatgtattgtccttaccaactaagttaagctcacggggac 11269688  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 29611420 - 29611452
Alignment:
Q  123 tgtccttaccaactgagttaagctcacggggac 155  Q
    |||||||||||||||||||||||||||||||||    
T  29611420 tgtccttaccaactgagttaagctcacggggac 29611452  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 155
Target Start/End: Original strand, 38340336 - 38340387
Alignment:
Q  103 ccttacatatatttatatattgtccttaccaactgagttaagctcacggggac 155  Q
    |||||||||| ||||| |||||||| |||||||||||||||||||||| ||||    
T  38340336 ccttacatat-tttatgtattgtccataccaactgagttaagctcacgaggac 38340387  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 121 - 156
Target Start/End: Complemental strand, 14137078 - 14137043
Alignment:
Q  121 attgtccttaccaactgagttaagctcacggggaca 156  Q
    |||||||||||||||||||||||||||||| |||||    
T  14137078 attgtccttaccaactgagttaagctcacgaggaca 14137043  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 121 - 156
Target Start/End: Original strand, 31604326 - 31604361
Alignment:
Q  121 attgtccttaccaactgagttaagctcacggggaca 156  Q
    ||||| ||||||||||||||||||||||||||||||    
T  31604326 attgttcttaccaactgagttaagctcacggggaca 31604361  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 149
Target Start/End: Original strand, 8464091 - 8464136
Alignment:
Q  103 ccttacatatatttatatattgtccttaccaactgagttaagctcac 149  Q
    ||||||||||||| || |||||||||||||||||||| |||||||||    
T  8464091 ccttacatatatt-atgtattgtccttaccaactgagctaagctcac 8464136  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 155
Target Start/End: Complemental strand, 18635558 - 18635524
Alignment:
Q  121 attgtccttaccaactgagttaagctcacggggac 155  Q
    |||||||||| ||||||||||||||||||||||||    
T  18635558 attgtccttatcaactgagttaagctcacggggac 18635524  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 152
Target Start/End: Complemental strand, 624509 - 624480
Alignment:
Q  123 tgtccttaccaactgagttaagctcacggg 152  Q
    ||||||||||||||||||||||||||||||    
T  624509 tgtccttaccaactgagttaagctcacggg 624480  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 156
Target Start/End: Original strand, 7371575 - 7371616
Alignment:
Q  115 ttatatattgtccttaccaactgagttaagctcacggggaca 156  Q
    |||| ||||||||||| |||||||||||||||||||| ||||    
T  7371575 ttatgtattgtccttatcaactgagttaagctcacggagaca 7371616  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 159
Target Start/End: Original strand, 10529308 - 10529353
Alignment:
Q  115 ttatatattgtcctt-accaactgagttaagctcacggggacagtt 159  Q
    ||||| ||||||||| |||||||||| |||||||||||||||||||    
T  10529308 ttatacattgtcctttaccaactgagctaagctcacggggacagtt 10529353  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 156
Target Start/End: Complemental strand, 20405956 - 20405915
Alignment:
Q  115 ttatatattgtccttaccaactgagttaagctcacggggaca 156  Q
    |||||||||||||||||||||| || |||| |||||||||||    
T  20405956 ttatatattgtccttaccaactaagctaagatcacggggaca 20405915  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 121 - 150
Target Start/End: Complemental strand, 29908084 - 29908055
Alignment:
Q  121 attgtccttaccaactgagttaagctcacg 150  Q
    ||||||||||||||||||||||||||||||    
T  29908084 attgtccttaccaactgagttaagctcacg 29908055  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 156
Target Start/End: Original strand, 51298723 - 51298764
Alignment:
Q  115 ttatatattgtccttaccaactgagttaagctcacggggaca 156  Q
    |||||||||||||||| ||||||||||||| |||||| ||||    
T  51298723 ttatatattgtccttatcaactgagttaagttcacggagaca 51298764  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 156
Target Start/End: Original strand, 54151652 - 54151693
Alignment:
Q  115 ttatatattgtccttaccaactgagttaagctcacggggaca 156  Q
    ||||| ||| |||||||||||||||||||||||||| |||||    
T  54151652 ttatacattatccttaccaactgagttaagctcacgaggaca 54151693  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 149
Target Start/End: Complemental strand, 19908720 - 19908692
Alignment:
Q  121 attgtccttaccaactgagttaagctcac 149  Q
    |||||||||||||||||||||||||||||    
T  19908720 attgtccttaccaactgagttaagctcac 19908692  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 150
Target Start/End: Original strand, 24885826 - 24885862
Alignment:
Q  114 tttatatattgtccttaccaactgagttaagctcacg 150  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  24885826 tttatgtattgtccataccaactgagttaagctcacg 24885862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 157
Target Start/End: Complemental strand, 29910489 - 29910453
Alignment:
Q  121 attgtccttaccaactgagttaagctcacggggacag 157  Q
    |||||||||| ||| ||||||||||||||||||||||    
T  29910489 attgtccttatcaattgagttaagctcacggggacag 29910453  T

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Target: scaffold0262 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 115 - 162
Target Start/End: Original strand, 15957 - 16004
Alignment:
Q  115 ttatatattgtccttaccaactgagttaagctcacggggacagtttat 162  Q
    ||||| |||||||||||||| ||||||||||||||| |||| ||||||    
T  15957 ttatacattgtccttaccaattgagttaagctcacgaggactgtttat 16004  T

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Target: scaffold0126 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 121 - 150
Target Start/End: Original strand, 34921 - 34950
Alignment:
Q  121 attgtccttaccaactgagttaagctcacg 150  Q
    ||||||||||||||||||||||||||||||    
T  34921 attgtccttaccaactgagttaagctcacg 34950  T

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Target: scaffold0117 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 156
Target Start/End: Complemental strand, 18327 - 18286
Alignment:
Q  115 ttatatattgtccttaccaactgagttaagctcacggggaca 156  Q
    ||||| ||||||||||||||||||| ||||||||||| ||||    
T  18327 ttatacattgtccttaccaactgagctaagctcacggagaca 18286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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