View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6961_low_6 (Length: 391)
Name: NF6961_low_6
Description: NF6961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6961_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 2906376 - 2905996
Alignment:
| Q |
1 |
acaattatggtaatactggtgcaatttggacaccaaaatctccacaaacagctgctactgctgttagaagccctcgtggtacaaaatccccttctcattc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2906376 |
acaattatggtaatactggtgcaatttggacaccaaaatctccacaaacagctgctactgctgttagaagccctcgtggtacaaaatccccttctcattc |
2906277 |
T |
|
| Q |
101 |
ccctattggtggtggcggtggagagcgtcgcgttcaattcggcacagttgtggaggtgggagatgaatttggtggcggcagcgaggaagaacaccaccat |
200 |
Q |
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|||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2906276 |
ccctgttggtggcggcggtggagagcgtcgtgttcaattcggcacagttgtggaggtgggagatgaatttggtggcggcagcgaggaagaacaccaccat |
2906177 |
T |
|
| Q |
201 |
aatgatgattttgttgagcatcatgagtccaaaaaagaacaagacataccacaaacattgataacggttgaacattagtctagataaagtgaaattccgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2906176 |
aatgatgattttgttgagcatcatgagtccaaaaaagaacaagacataccacaaacattgataacggttgaacactagtctagataaagtgaaattccgt |
2906077 |
T |
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| Q |
301 |
tgtaaatgtcttaatggattgaatgcacatggtgatatgtatatgatattggagtctaatacacacaagtgatgatgatgt |
381 |
Q |
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| T |
2906076 |
tgtaaatgtcttaatggattgaatgcacatggtgatatgtatatgatattggagtctaatacacacaagtgatgatgatgt |
2905996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 2854348 - 2853968
Alignment:
| Q |
1 |
acaattatggtaatactggtgcaatttggacaccaaaatctccacaaacagctgctactgctgttagaagccctcgtggtacaaaatccccttctcattc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2854348 |
acaattatggtaatactggtgcaatttggacaccaaaatctccacaaacagctgctactgctgttagaagccctcgtggtacaaaatccccttctcattc |
2854249 |
T |
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| Q |
101 |
ccctattggtggtggcggtggagagcgtcgcgttcaattcggcacagttgtggaggtgggagatgaatttggtggcggcagcgaggaagaacaccaccat |
200 |
Q |
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|||| ||||||||||||||| ||| |||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2854248 |
ccctgttggtggtggcggtgaggagtgtcgggttcaatttggcacagttgtggagatgggagatgaatttggtggcggcagcgaggaagaacaccaccat |
2854149 |
T |
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| Q |
201 |
aatgatgattttgttgagcatcatgagtccaaaaaagaacaagacataccacaaacattgataacggttgaacattagtctagataaagtgaaattccgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2854148 |
aatgatgattttgttgagcatcatgagtccaaaaaagaacaagacataccacaaacattgataacggttgaacactagtctagataaagtgaaattccgt |
2854049 |
T |
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| Q |
301 |
tgtaaatgtcttaatggattgaatgcacatggtgatatgtatatgatattggagtctaatacacacaagtgatgatgatgt |
381 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2854048 |
tgtaaatgtcttaatggattgaatgcacatggtgatatgtatatgatattggagtctaatacacacaagtgatgatgatgt |
2853968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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