View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6961_low_8 (Length: 375)

Name: NF6961_low_8
Description: NF6961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6961_low_8
NF6961_low_8
[»] chr8 (4 HSPs)
chr8 (12-360)||(14777731-14778079)
chr8 (107-356)||(11303371-11303620)
chr8 (172-317)||(18924069-18924214)
chr8 (258-320)||(19216883-19216945)
[»] chr5 (2 HSPs)
chr5 (12-360)||(23682136-23682484)
chr5 (12-360)||(23852327-23852675)
[»] chr3 (1 HSPs)
chr3 (172-360)||(11937839-11938027)
[»] chr4 (1 HSPs)
chr4 (99-334)||(9214698-9214932)
[»] chr1 (1 HSPs)
chr1 (84-349)||(22631705-22631970)
[»] scaffold0114 (1 HSPs)
scaffold0114 (126-358)||(24186-24418)


Alignment Details
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 12 - 360
Target Start/End: Complemental strand, 14778079 - 14777731
Alignment:
Q  12 gacatcaatggtgcttctgatgctcttcttgatcaacnnnnnnntgctcaaatatctttagagaatgctttggagaaggaagaagcattttggagagaaa 111  Q
    |||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14778079 gacatcaatggtgcttctgatgctcttcttgatcaacaaaaaaatgctcaaatatctttagagaatgctttggagaaggaagaagcattttggagagaaa 14777980  T
Q  112 aatccaacacttcgtggcactctcaaggggataggaacaccaaatatttccaccgtctagccaaaatcaaacacacctctaaacttatcagttccattgt 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14777979 aatccaacacttcgtggcactctcaaggggataggaacaccaaatatttccaccgtctagccaaaatcaaacacacctctaaacttatcagttccattgt 14777880  T
Q  212 ggatggggagaacgtgattactgagccggatcaaatctcatcgcatattacaaatcactttcaaaatattttatcaactaacttttctgtgcaggatttg 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  14777879 ggatggggagaacgtgattactgagccggatcaaatctcatcgcatattacaaatcactttcaaaatattttttcaactaacttttctgtgcaggatttg 14777780  T
Q  312 caggttgatgatttaattgatggagttgttcctaatctaatatctgatg 360  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  14777779 caggttgatgatttaattgatggagttgttcctaatctaatatctgatg 14777731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 107 - 356
Target Start/End: Original strand, 11303371 - 11303620
Alignment:
Q  107 agaaaaatccaacacttcgtggcactctcaaggggataggaacaccaaatatttccaccgtctagccaaaatcaaacacacctctaaacttatcagttcc 206  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |    
T  11303371 agaaaaatccaacacttcttggcactctcaagaggataggaacaccaaatatttccatcgtctagccaaaatcaaacacacctctaaacttattagtttc 11303470  T
Q  207 attgtggatggggagaacgtgattactgagccggatcaaatctcatcgcatattacaaatcactttcaaaatattttatcaactaacttttctgtgcagg 306  Q
    |||||| ||||| ||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||  | ||||||||||| |||||| |    
T  11303471 attgtgaatgggaagaacatgattagtgagccggatcaaatctcatcgcatatcacaaatcactttcaaaatatttgtttaactaacttttatgtgcaag 11303570  T
Q  307 atttgcaggttgatgatttaattgatggagttgttcctaatctaatatct 356  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  11303571 atttgcaggttgatgatttaattgatggagttgttcctaatataatatct 11303620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 172 - 317
Target Start/End: Complemental strand, 18924214 - 18924069
Alignment:
Q  172 ccaaaatcaaacacacctctaaacttatcagttccattgtggatggggagaacgtgattactgagccggatcaaatctcatcgcatattacaaatcactt 271  Q
    ||||||||||| ||||||||||||| |||| |||||||  ||||||||| ||| |||||||||||||  ||  ||| |||   || |||||||| |||||    
T  18924214 ccaaaatcaaaaacacctctaaactcatcacttccattaaggatggggataacatgattactgagccaaatttaatatcaagtcacattacaaaccactt 18924115  T
Q  272 tcaaaatattttatcaactaacttttctgtgcaggatttgcaggtt 317  Q
      |||||||||| |||||||| ||||||||||||||||||||||||    
T  18924114 caaaaatattttttcaactaatttttctgtgcaggatttgcaggtt 18924069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 320
Target Start/End: Complemental strand, 19216945 - 19216883
Alignment:
Q  258 attacaaatcactttcaaaatattttatcaactaacttttctgtgcaggatttgcaggttgat 320  Q
    ||||||||||||||| |||||||||| || ||||||  |  ||||||||| ||||||||||||    
T  19216945 attacaaatcactttaaaaatattttttccactaacaatgttgtgcaggaattgcaggttgat 19216883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 12 - 360
Target Start/End: Original strand, 23682136 - 23682484
Alignment:
Q  12 gacatcaatggtgcttctgatgctcttcttgatcaacnnnnnnntgctcaaatatctttagagaatgctttggagaaggaagaagcattttggagagaaa 111  Q
    |||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23682136 gacatcaatggtgcttctgatgctcttcttgatcaacaaaaaaatgctcaaatatctttagagaatgctttggagaaggaagaagcattttggagagaaa 23682235  T
Q  112 aatccaacacttcgtggcactctcaaggggataggaacaccaaatatttccaccgtctagccaaaatcaaacacacctctaaacttatcagttccattgt 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23682236 aatccaacacttcgtggcactctcaaggggataggaacaccaaatatttccaccgtctagccaaaatcaaacacacctctaaacttatcagttccattgt 23682335  T
Q  212 ggatggggagaacgtgattactgagccggatcaaatctcatcgcatattacaaatcactttcaaaatattttatcaactaacttttctgtgcaggatttg 311  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  23682336 ggatggggagaacgtgattactgagctggatcaaatctcatcgcatattacaaatcactttcaaaatattttttcaactaacttttctgtgcaggatttg 23682435  T
Q  312 caggttgatgatttaattgatggagttgttcctaatctaatatctgatg 360  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  23682436 caggttgatgatttaattgatggagttgttcctaatctaatatctgatg 23682484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 12 - 360
Target Start/End: Complemental strand, 23852675 - 23852327
Alignment:
Q  12 gacatcaatggtgcttctgatgctcttcttgatcaacnnnnnnntgctcaaatatctttagagaatgctttggagaaggaagaagcattttggagagaaa 111  Q
    |||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23852675 gacatcaatggtgcttctgatgctcttcttgatcaacaaaaaaatgctcaaatatctttagagaatgctttggagaaggaagaagcattttggagagaaa 23852576  T
Q  112 aatccaacacttcgtggcactctcaaggggataggaacaccaaatatttccaccgtctagccaaaatcaaacacacctctaaacttatcagttccattgt 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23852575 aatccaacacttcgtggcactctcaaggggataggaacaccaaatatttccaccgtctagccaaaatcaaacacacctctaaacttatcagttccattgt 23852476  T
Q  212 ggatggggagaacgtgattactgagccggatcaaatctcatcgcatattacaaatcactttcaaaatattttatcaactaacttttctgtgcaggatttg 311  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  23852475 ggatggggagaacgtgattactgagctggatcaaatctcatcgcatattacaaatcactttcaaaatattttttcaactaacttttctgtgcaggatttg 23852376  T
Q  312 caggttgatgatttaattgatggagttgttcctaatctaatatctgatg 360  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  23852375 caggttgatgatttaattgatggagttgttcctaatctaatatctgatg 23852327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 165; Significance: 4e-88; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 172 - 360
Target Start/End: Original strand, 11937839 - 11938027
Alignment:
Q  172 ccaaaatcaaacacacctctaaacttatcagttccattgtggatggggagaacgtgattactgagccggatcaaatctcatcgcatattacaaatcactt 271  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11937839 ccaaaatcaaacacacctataaacttatcagttccattgtggatggggagaacgtgattactgagccggatcaaatctcatcgcatatgacaaatcactt 11937938  T
Q  272 tcaaaatattttatcaactaacttttctgtgcaggatttgcaggttgatgatttaattgatggagttgttcctaatctaatatctgatg 360  Q
    |||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  11937939 tcaaaatattttttctactaacttttctatgcaggatttgcaggttgatgatttaattgatggagttgttcctaatataatatctgatg 11938027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 8e-40; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 99 - 334
Target Start/End: Original strand, 9214698 - 9214932
Alignment:
Q  99 ttttggagagaaaaatccaacacttcgtggcactctcaaggggataggaacaccaaatatttccaccgtctagccaaaatcaaacacacctctaaactta 198  Q
    |||||||| ||||||||||| | | | |||||  ||||||| || || |||||||||||||||||| | |||||||| ||||||||||| || ||||  |    
T  9214698 ttttggagggaaaaatccaataatgcttggcatgctcaaggagacagaaacaccaaatatttccacagactagccaacatcaaacacacatccaaacgca 9214797  T
Q  199 tcagttccattgtggatggggagaacgtgattactgagccggatcaaatctcatcgcatattacaaatcactttcaaaatattttatcaactaacttttc 298  Q
    |   ||| |||  ||||||||||||| |||||| |||||| || ||||| ||||| || || ||||||||||| ||||||||||| ||  |||| |||||    
T  9214798 ttgattctattaaggatggggagaacttgattattgagccaga-caaatttcatctcacataacaaatcacttccaaaatattttttcttctaatttttc 9214896  T
Q  299 tgtgcaggatttgcaggttgatgatttaattgatgg 334  Q
    |||||||||||||||||||||||| |||||||||||    
T  9214897 tgtgcaggatttgcaggttgatgaattaattgatgg 9214932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 84 - 349
Target Start/End: Original strand, 22631705 - 22631970
Alignment:
Q  84 gagaaggaagaagcattttggagagaaaaatccaacacttcgtggcactctcaaggggataggaacaccaaatatttccaccgtctagccaaaatcaaac 183  Q
    ||||||||||||| |||||||| ||| ||||| ||  |  | ||||| ||| ||||||||||||| ||||||||||| ||||| || || ||||| ||||    
T  22631705 gagaaggaagaagaattttggaaagagaaatctaattccacttggcattctaaaggggataggaataccaaatattttcaccgccttgcaaaaattaaac 22631804  T
Q  184 acacctctaaacttatcagttccattgtggatggggagaacgtgattactgagccggatcaaatctcatcgcatattacaaatcactttcaaaatatttt 283  Q
    | ||||| ||||| || |  || ||    ||||| || |||||| | || ||||| |||| ||| ||||| ||||| || ||||||||||||||||||||    
T  22631805 atacctccaaactcataaactcaataaatgatggagataacgtgctgaccgagccagatccaatttcatctcatatcactaatcactttcaaaatatttt 22631904  T
Q  284 atcaactaacttttctgtgcaggatttgcaggttgatgatttaattgatggagttgttcctaatct 349  Q
     ||  ||||||||  |||||||||||||||||| || || || || ||||||||| ||||||||||    
T  22631905 ttcctctaactttgttgtgcaggatttgcaggtggaagagttgatagatggagttattcctaatct 22631970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 126 - 358
Target Start/End: Complemental strand, 24418 - 24186
Alignment:
Q  126 tggcactctcaaggggataggaacaccaaatatttccaccgtctagccaaaatcaaacacacctctaaacttatcagttccattgtggatggggagaacg 225  Q
    ||||||||| |||||||||||||||||||||| || ||| | || || ||||| || || ||||| || || || |  || ||    ||||| |||||||    
T  24418 tggcactctaaaggggataggaacaccaaatactttcactgccttgcaaaaattaatcatacctcaaagctcataaactcaataaatgatggagagaacg 24319  T
Q  226 tgattactgagccggatcaaatctcatcgcatattacaaatcactttcaaaatattttatcaactaacttttctgtgcaggatttgcaggttgatgattt 325  Q
    || | || |||||  ||||||| ||||| ||||| | |||||| ||||| |||||||| ||  ||||||||  |||||||||||||||||| || || ||    
T  24318 tgctgaccgagccaaatcaaatttcatctcatatcataaatcattttcagaatattttttcctctaactttgttgtgcaggatttgcaggtggaagaatt 24219  T
Q  326 aattgatggagttgttcctaatctaatatctga 358  Q
     || ||||||||  |||||||||| || |||||    
T  24218 gatagatggagtcattcctaatcttatttctga 24186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University