View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6961_low_9 (Length: 349)

Name: NF6961_low_9
Description: NF6961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6961_low_9
NF6961_low_9
[»] chr4 (11 HSPs)
chr4 (74-334)||(27451195-27451455)
chr4 (74-325)||(23907324-23907575)
chr4 (74-329)||(48623549-48623804)
chr4 (74-328)||(1778038-1778293)
chr4 (74-299)||(435267-435492)
chr4 (74-288)||(53703655-53703870)
chr4 (73-326)||(39707472-39707725)
chr4 (14-73)||(27446759-27446818)
chr4 (247-334)||(16001137-16001225)
chr4 (262-321)||(56224776-56224835)
chr4 (79-144)||(2296364-2296429)
[»] chr2 (10 HSPs)
chr2 (77-327)||(45368651-45368901)
chr2 (74-321)||(452638-452885)
chr2 (74-329)||(24584628-24584886)
chr2 (81-329)||(8179798-8180046)
chr2 (124-329)||(37281111-37281316)
chr2 (173-320)||(13148336-13148482)
chr2 (74-159)||(2609703-2609788)
chr2 (74-147)||(14769487-14769560)
chr2 (152-312)||(33251337-33251497)
chr2 (73-116)||(13148540-13148583)
[»] chr7 (12 HSPs)
chr7 (74-330)||(32629616-32629868)
chr7 (78-329)||(36650999-36651250)
chr7 (74-319)||(39907401-39907646)
chr7 (74-329)||(33350828-33351083)
chr7 (74-329)||(38896622-38896877)
chr7 (74-329)||(24178217-24178472)
chr7 (133-329)||(11592694-11592890)
chr7 (74-260)||(22346586-22346772)
chr7 (74-217)||(38606156-38606298)
chr7 (74-184)||(46356873-46356983)
chr7 (74-147)||(36870346-36870419)
chr7 (70-129)||(11593158-11593217)
[»] chr6 (8 HSPs)
chr6 (74-330)||(20428659-20428915)
chr6 (78-327)||(5260274-5260523)
chr6 (96-327)||(30669902-30670132)
chr6 (74-329)||(6082394-6082660)
chr6 (74-259)||(9705850-9706035)
chr6 (74-223)||(3629377-3629526)
chr6 (122-329)||(26290789-26290995)
chr6 (95-285)||(2681479-2681669)
[»] chr1 (10 HSPs)
chr1 (74-329)||(43241403-43241658)
chr1 (74-327)||(8670925-8671178)
chr1 (74-325)||(51441786-51442037)
chr1 (95-329)||(49348445-49348679)
chr1 (74-318)||(29173551-29173795)
chr1 (74-321)||(32405486-32405729)
chr1 (74-303)||(45833593-45833820)
chr1 (241-322)||(11681833-11681914)
chr1 (95-299)||(35829434-35829638)
chr1 (74-288)||(34828107-34828321)
[»] chr8 (7 HSPs)
chr8 (74-330)||(15216293-15216547)
chr8 (74-329)||(36544157-36544411)
chr8 (74-308)||(42855035-42855271)
chr8 (74-175)||(36566263-36566364)
chr8 (111-180)||(6184814-6184883)
chr8 (241-321)||(13588720-13588800)
chr8 (75-135)||(30579245-30579305)
[»] chr5 (9 HSPs)
chr5 (74-329)||(2076496-2076751)
chr5 (74-329)||(20317996-20318251)
chr5 (74-329)||(24177529-24177784)
chr5 (120-329)||(1288596-1288805)
chr5 (77-323)||(26970-27215)
chr5 (249-319)||(22832091-22832161)
chr5 (74-313)||(37123591-37123831)
chr5 (248-321)||(25937109-25937183)
chr5 (178-312)||(756080-756214)
[»] chr3 (7 HSPs)
chr3 (74-329)||(51448731-51448986)
chr3 (74-329)||(52137833-52138088)
chr3 (92-329)||(38849107-38849344)
chr3 (79-322)||(3368775-3369016)
chr3 (157-329)||(27916583-27916753)
chr3 (77-144)||(48220971-48221038)
chr3 (74-147)||(50630343-50630414)
[»] scaffold0113 (1 HSPs)
scaffold0113 (74-325)||(13280-13531)
[»] scaffold0018 (1 HSPs)
scaffold0018 (74-282)||(30520-30728)
[»] scaffold0045 (1 HSPs)
scaffold0045 (92-259)||(90130-90297)
[»] scaffold0171 (1 HSPs)
scaffold0171 (96-213)||(5568-5685)
[»] scaffold0220 (1 HSPs)
scaffold0220 (120-183)||(25277-25340)
[»] scaffold0140 (1 HSPs)
scaffold0140 (197-267)||(14931-15001)


Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 74 - 334
Target Start/End: Original strand, 27451195 - 27451455
Alignment:
Q  74 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 173  Q
    ||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||| ||| |||||    
T  27451195 cacaaaatctctctaagtactctatcctacgccttctccaaataagtgaaaactaattgcaagtcttttttatccgtccgatatcgctccatcatgcgtc 27451294  T
Q  174 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 273  Q
     ||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||    
T  27451295 aaagtaagtagttcgcttccatagtcgacctccgaggaataaaaccaaataagttatccgtaacatgagtctcttttcttagtcttcgctcaattaccct 27451394  T
Q  274 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatgatgt 334  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  27451395 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaattatgt 27451455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 74 - 325
Target Start/End: Original strand, 23907324 - 23907575
Alignment:
Q  74 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 173  Q
    |||||||||||||| ||||||||||||||||||||  |||||| | |||||||||| ||||||||||||||||| ||||||||||||||| |||||||||    
T  23907324 cacaaaatctctcttggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgttcgatatcgctccatcacgcgtc 23907423  T
Q  174 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 273  Q
    ||||||||||| |  |||||||||||||||||||||||||||||||||||   |||||  ||||  ||||||  |||||||||||||  || || |||||    
T  23907424 gaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattgattatccgtaactcgagtctcctttcttagtcttctttcgatcaccct 23907523  T
Q  274 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcg 325  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  23907524 ttcccataactttatggtatgactcattagcttaattcccctataattcgcg 23907575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 74 - 329
Target Start/End: Original strand, 48623549 - 48623804
Alignment:
Q  74 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 173  Q
    |||||||||||||| ||||||||||||||| ||||  |||||| | |||||||||| ||||||||||||||||| || | |||||||||| |||||||||    
T  48623549 cacaaaatctctctcggtactctatcatacaccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtcctatatcgctccatcacgcgtc 48623648  T
Q  174 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 273  Q
    ||| ||||||| |  |||||||||||||||||||||||||||||||||||  ||||||| ||||  ||||||  |||||||||||||  || || |||||    
T  48623649 gaactaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatctgtaactcgagtcttctttcttagtcttctttcgatcaccct 48623748  T
Q  274 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48623749 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat 48623804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 74 - 328
Target Start/End: Original strand, 1778038 - 1778293
Alignment:
Q  74 cacaaaatctctctaggtactctatcatacgccttcc-ccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgt 172  Q
    |||||||||||||| | ||||||||||||| ||||   |||||| | |||||||||| ||||||| ||||||||| || |||||||||||| |||| |||    
T  1778038 cacaaaatctctcttgatactctatcatacacctttttccaaatcaatgaaaactaagtgcaagttttttttatccgtccgatatcgctccatcacacgt 1778137  T
Q  173 cgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccc 272  Q
    |||||||||||| |  ||||||||||| ||||||||||||||||| |||||  ||||||  ||||  ||||||  |||||||||||||  || || ||||    
T  1778138 cgaagtaagtagattgcttccatagtcaacctcccaggcataaaatcaaattggttatccgtaactcgagtctcctttcttagtcttctttcgatcaccc 1778237  T
Q  273 tttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaa 328  Q
    |||||||||| | |||||||||||||||||||||||||| ||||||||||||||||    
T  1778238 tttcccataattccatggtatgactcattagcttaattctcctataattcgcgcaa 1778293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 74 - 299
Target Start/End: Complemental strand, 435492 - 435267
Alignment:
Q  74 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 173  Q
    |||||||||||||| |||||||||||||||| |||  |||||| | |||||||||| ||||||||||||||||| || |||||||||||  |||||||||    
T  435492 cacaaaatctctctcggtactctatcatacgtcttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctctatcacgcgtc 435393  T
Q  174 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 273  Q
    ||||||||||| |  ||||||||||| |||||||||||||||||||||||  ||||||  ||||  ||| ||  |||||||||||||  || || |||||    
T  435392 gaagtaagtagattgcttccatagtcaacctcccaggcataaaaccaaattggttatccgtaactcgagcctcctttcttagtcttctttcgatcaccct 435293  T
Q  274 ttcccataacttcatggtatgactca 299  Q
    ||||||||||||||||||||||||||    
T  435292 ttcccataacttcatggtatgactca 435267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 74 - 288
Target Start/End: Complemental strand, 53703870 - 53703655
Alignment:
Q  74 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtctttttt-atctgttcgatatcgctccctcacgcgt 172  Q
    |||||||||||||| ||||||| ||||||||||||  |||||| |||||||||||| |||||||| ||||| ||| || |||||||||||| ||||||||    
T  53703870 cacaaaatctctctcggtactcaatcatacgccttttccaaatcagtgaaaactaagtgcaagtcctttttcatccgtccgatatcgctccgtcacgcgt 53703771  T
Q  173 cgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccc 272  Q
    |||||||||||| |  ||||||||||||||||| ||| ||||||| ||| |  ||||||| ||||  ||||||  |||||||||||||  || || ||||    
T  53703770 cgaagtaagtagattgcttccatagtcgacctctcagacataaaatcaatttggttatctgtaacccgagtctcctttcttagtcttctttcgatcaccc 53703671  T
Q  273 tttcccataacttcat 288  Q
    ||||||||||||||||    
T  53703670 tttcccataacttcat 53703655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 73 - 326
Target Start/End: Complemental strand, 39707725 - 39707472
Alignment:
Q  73 tcacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgt 172  Q
    |||||||| ||||||||| ||||||||||||| |||| |||||| | |||||||||| ||||||||||||||||| ||  | ||||||||| |||| |||    
T  39707725 tcacaaaacctctctaggcactctatcatacgtcttctccaaatcaatgaaaactaagtgcaagtcttttttatccgtctgttatcgctccatcacacgt 39707626  T
Q  173 cgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattacc- 271  Q
    |||||||||||  || ||| | ||||| | || ||||||||||||| ||||  |||||   |||   || | | ||||||||||||||| ||||| |||     
T  39707625 cgaagtaagtaaatcgctttcgtagtcaatct-ccaggcataaaacaaaattggttattcgtaaatcgactttcttttcttagtcttcgttcaatcacct 39707527  T
Q  272 ctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgc 326  Q
     ||||| ||||||||||||||||||||||||| |||||||| |||||||| ||||    
T  39707526 ttttcctataacttcatggtatgactcattagtttaattcctctataattggcgc 39707472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 27446759 - 27446818
Alignment:
Q  14 catcaagaatcacaaggttttagagtagatgactgacttggagaaatgaaagagatttgt 73  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27446759 catcaagaatcacaaggttttagagtagatgactgacttggagaaatgaaagagatttgt 27446818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 247 - 334
Target Start/End: Original strand, 16001137 - 16001225
Alignment:
Q  247 ttttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcatt-agcttaattcccctataattcgcgcaatgatgt 334  Q
    ||||||||||||||| | ||| |||||||||||||||||||| |||||||||||| |  ||||||| |||||||||| |||||| ||||    
T  16001137 ttttcttagtcttcgttaaatcaccctttcccataacttcatagtatgactcattaattttaattctcctataattcacgcaattatgt 16001225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 262 - 321
Target Start/End: Complemental strand, 56224835 - 56224776
Alignment:
Q  262 ctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataatt 321  Q
    |||||||||| ||||||| |||||||||  |||||||||||| |||||||| ||||||||    
T  56224835 ctcaattaccatttcccacaacttcatgacatgactcattagtttaattcctctataatt 56224776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 144
Target Start/End: Complemental strand, 2296429 - 2296364
Alignment:
Q  79 aatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtctttttt 144  Q
    ||||||| |||| |||||||  ||| ||||| |||||| | |||||||||| ||||||||||||||    
T  2296429 aatctctttaggaactctattgtacaccttctccaaatcaatgaaaactaagtgcaagtctttttt 2296364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 159; Significance: 1e-84; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 77 - 327
Target Start/End: Original strand, 45368651 - 45368901
Alignment:
Q  77 aaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaa 176  Q
    ||||||||||||||||||||||||||||||||| | |||| | |||||||||| || ||||  |||||||| || |||||||||||| ||||||||||||    
T  45368651 aaaatctctctaggtactctatcatacgccttctcaaaatcaatgaaaactaagtgtaagttctttttatccgtccgatatcgctccatcacgcgtcgaa 45368750  T
Q  177 gtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttc 276  Q
    |||||||  || ||||||||||| |||||||||||||||| ||||||  ||||||  |||||||||||| ||||||||||||||| ||||||||||||||    
T  45368751 gtaagtatatcgcttccatagtcaacctcccaggcataaagccaaattggttatccgtaacatgagtctcttttcttagtcttcgttcaattaccctttc 45368850  T
Q  277 ccataacttcatggtatgactcattagcttaattcccctataattcgcgca 327  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  45368851 ccataatttcatggtatgactcattagcttaattcccctataattcgcgca 45368901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 74 - 321
Target Start/End: Original strand, 452638 - 452885
Alignment:
Q  74 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 173  Q
    |||||||||||||| ||||||||||| ||||||||  |||||| | |||||||||| ||||||||||||||||| || |||||||||||| |||||||||    
T  452638 cacaaaatctctctcggtactctatcgtacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtc 452737  T
Q  174 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 273  Q
    ||||||||||| |  |||||||||||||||||||||||||||||||||||  ||||||  ||||  ||||||  |||||||||||||  || || |||||    
T  452738 gaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatccgtaactcgagtctcctttcttagtcttctttcgatcaccct 452837  T
Q  274 ttcccataacttcatggtatgactcattagcttaattcccctataatt 321  Q
    ||| | ||||||||||||||||||||||||||||||||||||||||||    
T  452838 ttctcgtaacttcatggtatgactcattagcttaattcccctataatt 452885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 74 - 329
Target Start/End: Original strand, 24584628 - 24584886
Alignment:
Q  74 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 173  Q
    |||||||||||||| |  |||||||||||||||||| |||||| | |||||| ||  || |||||||||||||| || |||||||||||| |||||||||    
T  24584628 cacaaaatctctctggaaactctatcatacgccttctccaaatcaatgaaaattaggtgtaagtcttttttatccgtccgatatcgctccatcacgcgtc 24584727  T
Q  174 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctc---aattac 270  Q
    ||||||||||| || |||||||| |||||||||||| ||||||||||||| |||||||| ||||  ||||||  |||||||||||| | ||   ||| ||    
T  24584728 gaagtaagtagatcgcttccatactcgacctcccagacataaaaccaaatcagttatctataactcgagtctcctttcttagtctttgttcaataatcac 24584827  T
Q  271 cctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  24584828 cctttcccataacttcatggtatgactcattagcttaattcccctataattcgtgcaat 24584886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 81 - 329
Target Start/End: Complemental strand, 8180046 - 8179798
Alignment:
Q  81 tctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaa 180  Q
    ||||||| |||||||||||||||| |||  |||||| | ||||||| || ||||||||||||||||| || |||||||||||| ||||||||| ||||||    
T  8180046 tctctctcggtactctatcatacgtcttttccaaatcaatgaaaaccaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtcaaagtaa 8179947  T
Q  181 gtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcccat 280  Q
    |||| |  ||| |||||||||||||||||||||||||||||||  ||||||  ||||  ||||||  |||||||||||||  || || ||||||||||||    
T  8179946 gtagattgctttcatagtcgacctcccaggcataaaaccaaattggttatccgtaactcgagtctcctttcttagtcttctttcgatcaccctttcccat 8179847  T
Q  281 aacttcatggtatgactcattagcttaattcccctataattcgcgcaat 329  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  8179846 aacttcatggtatgacttattagcttaattcccctataattcgcgcaat 8179798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 124 - 329
Target Start/End: Complemental strand, 37281316 - 37281111
Alignment:
Q  124 aactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaat 223  Q
    |||||||||||| ||||||||||  |   || |||||| | |||| |||| |||||||||| ||||||| ||||||||| || |||| ||||||||||||    
T  37281316 aactaattgcaaatcttttttattcgcatgacatcgcttcatcacacgtcaaagtaagtagatcacttctatagtcgacttctcaggtataaaaccaaat 37281217  T
Q  224 aagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcg 323  Q
      ||||||  |||| | ||| | ||| ||||||||||| ||||| ||  |||  |||||||||||||||||| ||||||| ||||||| |||||||||||    
T  37281216 tggttatcagtaacttaagtttgtttacttagtcttcgttcaatcactttttatcataacttcatggtatgattcattagtttaattctcctataattcg 37281117  T
Q  324 cgcaat 329  Q
    ||||||    
T  37281116 cgcaat 37281111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 173 - 320
Target Start/End: Complemental strand, 13148482 - 13148336
Alignment:
Q  173 cgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccc 272  Q
    |||||||||||| || |||||||||| |||  || |||||||||| |||||  ||||||  ||||  |||||| ||||||||||||||  ||||| ||||    
T  13148482 cgaagtaagtagatcgcttccatagttgaca-cctaggcataaaatcaaattggttatcgataactcgagtctcttttcttagtcttcattcaatcaccc 13148384  T
Q  273 tttcccataacttcatggtatgactcattagcttaattcccctataat 320  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||||    
T  13148383 tttcccataacttcatggtaagactcattagtttaattcccctataat 13148336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 74 - 159
Target Start/End: Complemental strand, 2609788 - 2609703
Alignment:
Q  74 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcg 159  Q
    ||||||||||||||  | |||||||||||||||||  |||||| | |||||||||| ||||||||||||||||| || ||||||||    
T  2609788 cacaaaatctctctcagcactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcg 2609703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 74 - 147
Target Start/End: Complemental strand, 14769560 - 14769487
Alignment:
Q  74 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatc 147  Q
    |||||||||||||||| |||| ||||||||| |||| |||||| | ||||||| || |||||||||||||||||    
T  14769560 cacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatc 14769487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 152 - 312
Target Start/End: Complemental strand, 33251497 - 33251337
Alignment:
Q  152 cgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttc 251  Q
    |||||||||||| |||| ||||||||||| ||| | ||||||||||  |||||  | |||||||||||| ||  |||||   ||||  || ||  ||||     
T  33251497 cgatatcgctccatcacacgtcgaagtaattagataacttccatagaagacctttcgggcataaaaccagattggttataagtaactcgaatcacttttt 33251398  T
Q  252 ttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcc 312  Q
    |||||||||| ||||| ||| ||| ||||| |||||||| ||||||||| || ||||||||    
T  33251397 ttagtcttcgttcaatcaccattttccatagcttcatgggatgactcataagtttaattcc 33251337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 13148583 - 13148540
Alignment:
Q  73 tcacaaaatctctctaggtactctatcatacgccttccccaaat 116  Q
    |||||||||||||||||| ||||||||| || ||||||||||||    
T  13148583 tcacaaaatctctctaggcactctatcacacaccttccccaaat 13148540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 156; Significance: 8e-83; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 74 - 330
Target Start/End: Complemental strand, 32629868 - 32629616
Alignment:
Q  74 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 173  Q
    |||||||||||||||||||||||||||||||||||| |||||| | |||||||||| || |||||||||||||| || ||||||| |||| |||||||||    
T  32629868 cacaaaatctctctaggtactctatcatacgccttctccaaatcaatgaaaactaagtgtaagtcttttttatccgtccgatatctctccatcacgcgtc 32629769  T
Q  174 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 273  Q
    ||||||    | || |||||||||||||||| ||||||||||| ||||||  ||||||  |||| ||||||| ||||||||||||||| |||||||||||    
T  32629768 gaagta----gatcgcttccatagtcgaccttccaggcataaagccaaattggttatccgtaacgtgagtctcttttcttagtcttcgttcaattaccct 32629673  T
Q  274 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatg 330  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  32629672 ttcccataacttcatggtatgactcattagcttaattcccctgtaattcgcgcaatg 32629616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 78 - 329
Target Start/End: Complemental strand, 36651250 - 36650999
Alignment:
Q  78 aaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaag 177  Q
    |||||||||| ||||||||||||||||||||  |||||| | |||||||||| ||||||||||||||||| || |||||||||||| |||||||||||||    
T  36651250 aaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtcgaag 36651151  T
Q  178 taagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcc 277  Q
    ||||||| |  |||||||| |||||||||||| |||||||||||||  ||||||  ||||  ||||||  |||||||||||||  ||||| |||||||||    
T  36651150 taagtagattgcttccataatcgacctcccagacataaaaccaaattggttatccgtaactcgagtctcctttcttagtcttctttcaatcaccctttcc 36651051  T
Q  278 cataacttcatggtatgactcattagcttaattcccctataattcgcgcaat 329  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  36651050 cataacttcatggtatgactcattagcttaattctcctataattcacgcaat 36650999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 74 - 319
Target Start/End: Original strand, 39907401 - 39907646
Alignment:
Q  74 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 173  Q
    |||||||||||||| ||||||||||||||||||||  |||||| | |||||||||| |||||||||||||||||||| |||||||||||| |||||||||    
T  39907401 cacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatctgtccgatatcgctccatcacgcgtc 39907500  T
Q  174 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 273  Q
    ||||||||||| |  |||||| ||||||||||||||||||||||||||||  ||||||  ||||  | ||||  |||||||||||||  || || |||||    
T  39907501 gaagtaagtagattgcttccacagtcgacctcccaggcataaaaccaaattggttatccgtaactcgggtctcctttcttagtcttctttcgatcaccct 39907600  T
Q  274 ttcccataacttcatggtatgactcattagcttaattcccctataa 319  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  39907601 ttcccataacttcatggtatgactcattagcttaattccccaataa 39907646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 74 - 329
Target Start/End: Original strand, 33350828 - 33351083
Alignment:
Q  74 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 173  Q
    |||||||||||||| ||||||||||||||| ||||  |||||| |  ||||||||| ||||||||||||||||| || |||||||||||| ||||||||     
T  33350828 cacaaaatctctctcggtactctatcataccccttttccaaatcaaagaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtt 33350927  T
Q  174 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 273  Q
    ||||||||||| |  |||||||||||||||||||| ||||||||||||||  ||||||  ||||  ||||||  |||||||||||||  |  || |||||    
T  33350928 gaagtaagtagattgcttccatagtcgacctcccaagcataaaaccaaattggttatccgtaactagagtctcctttcttagtcttcttttgatcaccct 33351027  T
Q  274 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat 329  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  33351028 ttcccacaacttcatggtatgactcattagcttaattcccctataattcgcgcaat 33351083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 74 - 329
Target Start/End: Complemental strand, 38896877 - 38896622
Alignment:
Q  74 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 173  Q
    |||||||||||||| ||||||||||||||| ||||  |||||| | |||||||||| ||||||||||||||||| || |||||||||||| |   |||||    
T  38896877 cacaaaatctctctcggtactctatcatacaccttttccaaattaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccattgtgcgtc 38896778  T
Q  174 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 273  Q
    ||||||||||| |  |||||||||| |||||||||||||||||||| |||  ||||||  ||||  ||||||  |||||||||||||  || || |||||    
T  38896777 gaagtaagtagattgcttccatagttgacctcccaggcataaaaccgaattggttatccgtaactcgagtctcctttcttagtcttctttcgatcaccct 38896678  T
Q  274 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat 329  Q
    || ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  38896677 tttccataacttcatggtatgactcattagcttaattcccctataatttgcgcaat 38896622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 74 - 329
Target Start/End: Original strand, 24178217 - 24178472
Alignment:
Q  74 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 173  Q
    ||||||||||||||||||||||| |||||| || || |||||| | ||||||||||||| ||  ||||| |||| || || ||||||||| |||||| ||    
T  24178217 cacaaaatctctctaggtactctgtcatacaccgtctccaaatcaatgaaaactaattgtaacccttttgtatccgtccggtatcgctccatcacgcatc 24178316  T
Q  174 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 273  Q
    | || |||||| || ||||||||||||||||||  ||| |||||||||||  ||||||  |||| ||||||| ||||||||||||||| | ||| |||||    
T  24178317 gcagcaagtagatcgcttccatagtcgacctccagggcgtaaaaccaaatttgttatccgtaacttgagtctcttttcttagtcttcgttgaatcaccct 24178416  T
Q  274 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat 329  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  24178417 ttcccataacttcatggtatgactcattagctaaattcccctataattcacgcaat 24178472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 133 - 329
Target Start/End: Complemental strand, 11592890 - 11592694
Alignment:
Q  133 caagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatct 232  Q
    ||||||||||||||  || |||||||||||| ||||||||||||||||| || |  |||||||||||||||||| || |||||||||||||  ||||||     
T  11592890 caagtcttttttattcgtccgatatcgctccatcacgcgtcgaagtaagcagattgcttccatagtcgacctccaagccataaaaccaaattggttatcc 11592791  T
Q  233 ttaacatgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat 329  Q
     ||||  ||||||  |||||||||||||  || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11592790 gtaactcgagtctcctttcttagtcttctttcgatcaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat 11592694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 74 - 260
Target Start/End: Complemental strand, 22346772 - 22346586
Alignment:
Q  74 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 173  Q
    |||||||||||||| ||||||||||||||||||||  |||||| | |||||||||| ||||||||||||||||| ||||||||||||||| ||||| |||    
T  22346772 cacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgttcgatatcgctccatcacgtgtc 22346673  T
Q  174 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttc 260  Q
    ||||||||||| |  |||||||||||||||||||||||||||||||||||  ||||||   |||  ||||||  |||||||||||||    
T  22346672 gaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatccgaaactcgagtctcctttcttagtcttc 22346586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 74 - 217
Target Start/End: Complemental strand, 38606298 - 38606156
Alignment:
Q  74 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 173  Q
    ||||||||||||| |||||||| ||||||||||||| | |||| | |||||||||| || |||||||||||||| || |||||||||||| |||||||||    
T  38606298 cacaaaatctctccaggtactc-atcatacgccttctcaaaatcaatgaaaactaagtgtaagtcttttttatccgtccgatatcgctccatcacgcgtc 38606200  T
Q  174 gaagtaagtagttcacttccatagtcgacctcccaggcataaaa 217  Q
    ||||||||||| || ||| ||||||||||||||||| |||||||    
T  38606199 gaagtaagtagatcgctttcatagtcgacctcccagacataaaa 38606156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 74 - 184
Target Start/End: Original strand, 46356873 - 46356983
Alignment:
Q  74 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 173  Q
    |||||||||||||| ||||||||||||||||||||  |||||| | |||||||||| ||||||||||||||||  || |||||||||||| |||||||||    
T  46356873 cacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttattcgtccgatatcgctccatcacgcgtc 46356972  T
Q  174 gaagtaagtag 184  Q
    |||||||||||    
T  46356973 gaagtaagtag 46356983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 74 - 147
Target Start/End: Original strand, 36870346 - 36870419
Alignment:
Q  74 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatc 147  Q
    ||||||||||||||||| |||||||||||||||||| |||||| | |||||| ||| ||||||| |||||||||    
T  36870346 cacaaaatctctctaggcactctatcatacgccttctccaaatcaatgaaaattaagtgcaagtattttttatc 36870419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 129
Target Start/End: Complemental strand, 11593217 - 11593158
Alignment:
Q  70 ttgtcacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaa 129  Q
    |||||||||||||||||| ||||||||||||||||||||  |||||| | ||||||||||    
T  11593217 ttgtcacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaa 11593158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 153; Significance: 5e-81; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 74 - 330
Target Start/End: Original strand, 20428659 - 20428915
Alignment:
Q  74 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 173  Q
    ||||||||||||||||||||||||||||||||||||  ||||| | |||||||||  || |||||||||||||| || |||||||||||| |||| ||||    
T  20428659 cacaaaatctctctaggtactctatcatacgccttctacaaatcaatgaaaactaggtgtaagtcttttttatccgtccgatatcgctccatcacacgtc 20428758  T
Q  174 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 273  Q
     |||||||||| || ||||||||||| |||||||| ||||||||||| ||  ||||| | |||| ||||||| | ||||||||||||| |||||||||||    
T  20428759 aaagtaagtagatcgcttccatagtcaacctcccaagcataaaaccatattggttatttgtaacgtgagtctctgttcttagtcttcgttcaattaccct 20428858  T
Q  274 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatg 330  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  20428859 ttcccataacttcatggtatgactcattagcttaattcccttataattcgcgcaatg 20428915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 78 - 327
Target Start/End: Original strand, 5260274 - 5260523
Alignment:
Q  78 aaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaag 177  Q
    |||||||||||||||||||||||||||||||| ||||||   |||||||||| || |||||||||||||| || |||||||||||| ||| ||||||||     
T  5260274 aaatctctctaggtactctatcatacgccttctccaaatcgatgaaaactaagtgtaagtcttttttatccgtccgatatcgctccatcaggcgtcgaaa 5260373  T
Q  178 taagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcc 277  Q
    |||  || || |||||||| |||||||||||  |||||||||||||  ||||||  |||| ||||||| |||||| ||||||||||||||||||||||||    
T  5260374 taaagagatcgcttccataatcgacctcccatacataaaaccaaattggttatccgtaacgtgagtctcttttctaagtcttcgctcaattaccctttcc 5260473  T
Q  278 cataacttcatggtatgactcattagcttaattcccctataattcgcgca 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5260474 cataacttcatggtatgactcattagcttaattcccctataattcgcgca 5260523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 96 - 327
Target Start/End: Complemental strand, 30670132 - 30669902
Alignment:
Q  96 tatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccat 195  Q
    ||||| |||||||| |||||| | |||||||||| || ||||||||||| ||||| |||||||||||| |||| ||||||||||||||| |  |||||||    
T  30670132 tatcaaacgccttctccaaatcaatgaaaactaagtgtaagtcttttttctctgtccgatatcgctccatcacacgtcgaagtaagtagattgcttccat 30670033  T
Q  196 agtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatga 295  Q
    |||||||||||  |||||||||||||||  ||||||  |||| |||||||  |||||||||||||| ||||| | ||||| |||||||||||||||||||    
T  30670032 agtcgacctcct-ggcataaaaccaaattggttatccgtaacttgagtctcatttcttagtcttcgttcaatcatcctttgccataacttcatggtatga 30669934  T
Q  296 ctcattagcttaattcccctataattcgcgca 327  Q
    |||||||||||||||||||||||||| |||||    
T  30669933 ctcattagcttaattcccctataatttgcgca 30669902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 74 - 329
Target Start/End: Complemental strand, 6082660 - 6082394
Alignment:
Q  74 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 173  Q
    |||||||||||||| ||||||||||||||| ||||  |||||| | |||||||||| |||||||| |||||||| || |||||||||| | ||||  |||    
T  6082660 cacaaaatctctctcggtactctatcatacaccttttccaaatcaatgaaaactaagtgcaagtcctttttatccgtccgatatcgctgcatcacatgtc 6082561  T
Q  174 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataa-----------gttatctttaacatgagtctattttcttagtcttcgc 262  Q
    ||||||||||| |  |||||||||||||||||||||||||||||  ||| ||           ||||||  ||||  ||||||  |||||||||||||      
T  6082560 gaagtaagtagattgcttccatagtcgacctcccaggcataaaaaaaaaaaaaaaaaaaattggttatccgtaactcgagtctcctttcttagtcttctt 6082461  T
Q  263 tcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat 329  Q
    || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6082460 tcgatcaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat 6082394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 74 - 259
Target Start/End: Complemental strand, 9706035 - 9705850
Alignment:
Q  74 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 173  Q
    |||||||||||||||||||||||||||||||||||| |||||| | |||||||||| || |||||||||||||| || |||||||||||| || ||||||    
T  9706035 cacaaaatctctctaggtactctatcatacgccttctccaaatcaatgaaaactaagtgtaagtcttttttatccgtccgatatcgctccatcgcgcgtc 9705936  T
Q  174 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtctt 259  Q
    ||||||||||| ||  ||||||||||||| |||||||||||||  ||| |  ||||||  |||| ||||||| |||||||||||||    
T  9705935 gaagtaagtagatcgtttccatagtcgacttcccaggcataaagtcaagttggttatccgtaacgtgagtctcttttcttagtctt 9705850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 74 - 223
Target Start/End: Complemental strand, 3629526 - 3629377
Alignment:
Q  74 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 173  Q
    |||||||||||  |||||||| ||||||||||||||  ||||| | |||||||||| || ||||||||||| | ||| |||||||||||| |||  || |    
T  3629526 cacaaaatctccataggtactttatcatacgccttcttcaaatcaatgaaaactaagtgtaagtcttttttgtttgtccgatatcgctccatcatacgcc 3629427  T
Q  174 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaat 223  Q
    ||||||||||| ||| |||||| |||||||||| | |||||||| |||||    
T  3629426 gaagtaagtagatcatttccattgtcgacctccaaagcataaaatcaaat 3629377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 122 - 329
Target Start/End: Complemental strand, 26290995 - 26290789
Alignment:
Q  122 aaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaa 221  Q
    |||||||| |||||||| ||||| | |||  ||||||||||| |||| | |||||| |||||| || |||||||| ||||||| |||  |||||||| ||    
T  26290995 aaaactaagtgcaagtcctttttttttgtctgatatcgctccatcacacatcgaagcaagtagatcgcttccata-tcgaccttccaaacataaaactaa 26290897  T
Q  222 ataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataatt 321  Q
    ||   || ||  |||| |||| || |||| |||||||||| ||||| || ||||    |||||| |||||||||||||| || ||||||||||||| |||    
T  26290896 attgattgtcaataacttgagactctttttttagtcttcgttcaatcactctttttattaactttatggtatgactcataaggttaattcccctatcatt 26290797  T
Q  322 cgcgcaat 329  Q
    ||| ||||    
T  26290796 cgcacaat 26290789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 285
Target Start/End: Original strand, 2681479 - 2681669
Alignment:
Q  95 ctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttcca 194  Q
    ||||||||||||||| |||||| | |||||||||| ||||||| ||||||| | ||  ||||||| |    ||  ||||||| ||||||  || ||||||    
T  2681479 ctatcatacgccttctccaaatcaatgaaaactaagtgcaagtattttttacccgtctgatatcgttgtaccatacgtcgaactaagtaagtcgcttcca 2681578  T
Q  195 tagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcccataactt 285  Q
    ||||| || |  ||| |||||||||||||  ||||||  |  |  |||||| |||||||| |||||  ||||| |||||||||| ||||||    
T  2681579 tagtcaactttacagacataaaaccaaattggttatccattcctcgagtctcttttcttaatcttccttcaatcaccctttcccgtaactt 2681669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 74 - 329
Target Start/End: Original strand, 43241403 - 43241658
Alignment:
Q  74 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 173  Q
    |||||||||||||| |||||||||||||||| |||  |||||| | |||||||||| ||||||||||||||||| || |||||||||||| |||||||||    
T  43241403 cacaaaatctctctcggtactctatcatacgtcttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtc 43241502  T
Q  174 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 273  Q
    ||||||||||| |  |||||||||||||||||||||||||||||||||||  ||||||  |||| |||||||  |||||||||||||  || || |||||    
T  43241503 gaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatccgtaacttgagtctcctttcttagtcttctttcgatcaccct 43241602  T
Q  274 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat 329  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  43241603 ttcccataacttcatggtatgactcattagcttaattcccttataattcacgcaat 43241658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 74 - 327
Target Start/End: Complemental strand, 8671178 - 8670925
Alignment:
Q  74 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 173  Q
    |||||||||||||| ||||||||||||||||||||  |||||| | |||||||||| ||||||||||||||||| || |||||||||||| |||||||||    
T  8671178 cacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtc 8671079  T
Q  174 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 273  Q
    ||||||||||| |  |||||||||||||||||||||||||||||||||||   |||||  ||||  ||| ||  ||||||||| |||  || || |||||    
T  8671078 gaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattttttatccgtaactcgaggctcctttcttagttttctttccatcaccct 8670979  T
Q  274 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgca 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8670978 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgca 8670925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 74 - 325
Target Start/End: Original strand, 51441786 - 51442037
Alignment:
Q  74 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 173  Q
    |||||||||||||  | ||||||||||||||| ||  |||||| | |||||||||| ||||||||||||||||| ||  |||||| |||| |||||||||    
T  51441786 cacaaaatctctcacgatactctatcatacgctttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtctgatatcactccatcacgcgtc 51441885  T
Q  174 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 273  Q
    || |||||||| |  |||||||||||||||||||||||||||||||||||  ||||||  ||||  ||||||  |||||||||||||  || || |||||    
T  51441886 gatgtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatccgtaactcgagtctcctttcttagtcttctttcgatcaccct 51441985  T
Q  274 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcg 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51441986 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcg 51442037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 95 - 329
Target Start/End: Original strand, 49348445 - 49348679
Alignment:
Q  95 ctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttcca 194  Q
    |||||| |||||||  |||||| | |||||||||| ||||||||||||||||| || |||||||||||| |||||||||||||||||||| |  ||||||    
T  49348445 ctatcacacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtcgaagtaagtagattgcttcca 49348544  T
Q  195 tagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatg 294  Q
    |||||||||||||||||||||||||||||  ||||||  ||||  ||||||  |||||||||||||  || || |||||||||||| |||||||||||||    
T  49348545 tagtcgacctcccaggcataaaaccaaattggttatccataactcgagtcttctttcttagtcttctttcgatcaccctttcccatgacttcatggtatg 49348644  T
Q  295 actcattagcttaattcccctataattcgcgcaat 329  Q
    ||||||||||||||||| |||||||||||||||||    
T  49348645 actcattagcttaattctcctataattcgcgcaat 49348679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 74 - 318
Target Start/End: Original strand, 29173551 - 29173795
Alignment:
Q  74 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 173  Q
    ||||||| |||||| || |||||||||||||||||| |||||| | | |||||||| ||||||||||||||||| ||  ||||||||||| |||| ||||    
T  29173551 cacaaaacctctctcggcactctatcatacgccttctccaaatcaataaaaactaagtgcaagtcttttttatccgtctgatatcgctccatcacacgtc 29173650  T
Q  174 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 273  Q
    ||||||||||  |  |||||||||||||||||| |||||||||||||||| |||||||  ||||  |||||| |||||||||| |||| ||||| | |||    
T  29173651 gaagtaagtaaattgcttccatagtcgacctcctaggcataaaaccaaattagttatccgtaactcgagtctcttttcttagttttcgttcaatcatcct 29173750  T
Q  274 ttcccataacttcatggtatgactcattagcttaattcccctata 318  Q
    ||| |||||||| || ||| |||||||||| ||||||||||||||    
T  29173751 ttcgcataacttgattgtacgactcattagtttaattcccctata 29173795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 74 - 321
Target Start/End: Original strand, 32405486 - 32405729
Alignment:
Q  74 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 173  Q
    ||||||||||||||||  |||||||||||||| || || |||| | |||||||||| ||||  ||||||||||| ||  ||||||  ||| ||||  |||    
T  32405486 cacaaaatctctctagacactctatcatacgcttttcc-aaatcaatgaaaactaagtgcacatcttttttatcagtctgatatc--tccatcacatgtc 32405582  T
Q  174 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 273  Q
    ||||||||||| |  |||||||||||||||| | ||||||||| ||||||   ||||   ||||  || ||| |||||||||||| |||||||| ||| |    
T  32405583 gaagtaagtagattgcttccatagtcgaccttcaaggcataaatccaaattgattattggtaactcgaatct-ttttcttagtctccgctcaatcacctt 32405681  T
Q  274 ttcccataacttcatggtatgactcattagcttaattcccctataatt 321  Q
    ||||||||||||||||||||||||||| || |||||| ||||||||||    
T  32405682 ttcccataacttcatggtatgactcataaggttaatttccctataatt 32405729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 74 - 303
Target Start/End: Complemental strand, 45833820 - 45833593
Alignment:
Q  74 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 173  Q
    |||||||| |||||||  |||||||| |||||||||  ||||| | |||||||||  | ||| |||||||||| ||| | ||||| |||| |||| ||||    
T  45833820 cacaaaatatctctagacactctatcgtacgccttcttcaaatcaatgaaaactatatacaaatcttttttatttgtccaatatcactccatcacacgtc 45833721  T
Q  174 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 273  Q
    ||||||||||| |  ||| |||||| ||  || ||  ||||||||||||| |||||||   ||| |||||||||||  |||||||||||||||| | | |    
T  45833720 gaagtaagtaggttgctttcatagttgatatctcatacataaaaccaaattagttatc--aaacttgagtctatttctttagtcttcgctcaatcatcat 45833623  T
Q  274 ttcccataacttcatggtatgactcattag 303  Q
    ||| ||||||||||||| ||||||| ||||    
T  45833622 ttctcataacttcatggcatgactcgttag 45833593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 241 - 322
Target Start/End: Complemental strand, 11681914 - 11681833
Alignment:
Q  241 agtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattc 322  Q
    ||||| ||||||||||||||||||||| |||||||||||||| || |||||||||||| |||||||||||||||||||||||    
T  11681914 agtctcttttcttagtcttcgctcaatcaccctttcccataatttgatggtatgactctttagcttaattcccctataattc 11681833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 95 - 299
Target Start/End: Original strand, 35829434 - 35829638
Alignment:
Q  95 ctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttcca 194  Q
    |||| ||| |||||| |||||| | |||||||||| || |  |||||||||| ||| | |||| | ||| |||  |||| |||||||||| |||||||||    
T  35829434 ctattataagccttctccaaatcaatgaaaactaagtgtatatcttttttatttgtccaatattgttccatcatacgtctaagtaagtagatcacttcca 35829533  T
Q  195 tagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatg 294  Q
    |||||||||||||||||||||| | ||||  |||||   ||||  |||| | |||||||| ||| || ||||| || ||||||||||||||| |||||||    
T  35829534 tagtcgacctcccaggcataaatctaaattggttataagtaactcgagtattttttcttactctccgttcaatcactctttcccataacttcttggtatg 35829633  T
Q  295 actca 299  Q
    |||||    
T  35829634 actca 35829638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 288
Target Start/End: Original strand, 34828107 - 34828321
Alignment:
Q  74 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 173  Q
    |||||||||||| |||  ||| |||||||| | |||  ||||| | |||||||||| ||| |||| ||||||| ||| ||||||| |||| ||   ||||    
T  34828107 cacaaaatctctttagacactatatcatacacattcttcaaatcaatgaaaactaagtgcgagtcatttttatatgtccgatatctctccatcgtacgtc 34828206  T
Q  174 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 273  Q
    |||||| |||| || |||| ||| ||||||||||   ||||||| |||||    |||   ||||   ||||| ||| ||| |||||| |||||| | |||    
T  34828207 gaagtaggtagatcgcttctataatcgacctccctaacataaaatcaaattgaatattgataactcaagtctctttccttggtcttctctcaatcatcct 34828306  T
Q  274 ttcccataacttcat 288  Q
    |||||||||||||||    
T  34828307 ttcccataacttcat 34828321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 150; Significance: 3e-79; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 74 - 330
Target Start/End: Original strand, 15216293 - 15216547
Alignment:
Q  74 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 173  Q
    |||||||||| ||||||||||||||||||||||||   ||||| | |||||||||| || ||||||||||||||  |||||||||||  | ||| |||||    
T  15216293 cacaaaatctatctaggtactctatcatacgccttattcaaatcaatgaaaactaaatgtaagtcttttttatccattcgatatcgc--catcaagcgtc 15216390  T
Q  174 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 273  Q
    ||||||||||| || ||| |||||||||||||||||||||||||||||||   |||||  |||| ||||||| |||||||||||||||||||||||||||    
T  15216391 gaagtaagtagatcgctttcatagtcgacctcccaggcataaaaccaaattgattatccataacttgagtctcttttcttagtcttcgctcaattaccct 15216490  T
Q  274 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaatg 330  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  15216491 ttcgcataacttcatggtatgactcattagcttaattcccctataattcgtgcaatg 15216547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 74 - 329
Target Start/End: Complemental strand, 36544411 - 36544157
Alignment:
Q  74 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 173  Q
    |||||||||| ||| |||||||||||||||||||| || |||| | |||||||||| ||||| ||||||||||| ||  ||||||||||  |||||||||    
T  36544411 cacaaaatctatctcggtactctatcatacgcctttcc-aaatcaatgaaaactaagtgcaaatcttttttatccgtcagatatcgctcaatcacgcgtc 36544313  T
Q  174 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 273  Q
    ||||||||||| |  |||||||||||||||||||||||||||||||||||  ||||||  |||| |||||||  |||||||||||||  || || |||||    
T  36544312 gaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatccgtaacttgagtctcctttcttagtcttctttcgatcaccct 36544213  T
Q  274 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat 329  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  36544212 ttcccataacttcatggtatgactcattagcttaattcccctatgattcgcgcaat 36544157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 74 - 308
Target Start/End: Original strand, 42855035 - 42855271
Alignment:
Q  74 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtctttttt--atctgttcgatatcgctccctcacgcg 171  Q
    |||||||| |||||||| ||||||||||| |||||| |||||| | |||||||||| || |||||||||||  ||| || | |||||||||| |||||||    
T  42855035 cacaaaatatctctaggcactctatcatatgccttctccaaatcaatgaaaactaagtgtaagtcttttttttatccgtccaatatcgctccatcacgcg 42855134  T
Q  172 tcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattacc 271  Q
    ||||||||||||| || |||| ||||||||||||||||||||||||||||||  ||||||  ||||  |||||| ||||||||||||||||||||||  |    
T  42855135 tcgaagtaagtagatcgcttcaatagtcgacctcccaggcataaaaccaaattggttatccgtaacgcgagtctcttttcttagtcttcgctcaattttc 42855234  T
Q  272 ctttcccataacttcatggtatgactcattagcttaa 308  Q
    |||||||||||||||||||||||||||||||||||||    
T  42855235 ctttcccataacttcatggtatgactcattagcttaa 42855271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 74 - 175
Target Start/End: Original strand, 36566263 - 36566364
Alignment:
Q  74 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 173  Q
    |||||||||||||| | ||||||||||||||||||  |||||| | |||||||||| ||||||||||||||||| || |||||||||||| |||||||||    
T  36566263 cacaaaatctctctcgatactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtc 36566362  T
Q  174 ga 175  Q
    ||    
T  36566363 ga 36566364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 111 - 180
Target Start/End: Complemental strand, 6184883 - 6184814
Alignment:
Q  111 ccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaa 180  Q
    |||||| | |||||||||| || ||||||||||||||||| |||||||||||| |||| |||||||||||    
T  6184883 ccaaatcaatgaaaactaagtgtaagtcttttttatctgtccgatatcgctccatcacacgtcgaagtaa 6184814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 241 - 321
Target Start/End: Complemental strand, 13588800 - 13588720
Alignment:
Q  241 agtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataatt 321  Q
    ||||| |||||||||| |||||||||| | | |||||| |||||| ||||||||||||||||| ||||||| | |||||||    
T  13588800 agtctcttttcttagttttcgctcaatcatcatttcccttaactttatggtatgactcattagtttaattcacttataatt 13588720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 135
Target Start/End: Original strand, 30579245 - 30579305
Alignment:
Q  75 acaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaa 135  Q
    |||||||||||||||| ||||||| || ||||||| |||||| | | |||||||| |||||    
T  30579245 acaaaatctctctaggcactctatgattcgccttctccaaatgaattaaaactaagtgcaa 30579305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 148; Significance: 5e-78; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 74 - 329
Target Start/End: Original strand, 2076496 - 2076751
Alignment:
Q  74 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 173  Q
    |||||||||||||| ||||||||||||||||||||  |||||| | |||||| ||| ||||||||||||||||| || |||||||||||| || ||||||    
T  2076496 cacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaattaagtgcaagtcttttttatccgtccgatatcgctccatcccgcgtc 2076595  T
Q  174 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 273  Q
    ||||||||||| |  |||||||||||||||||||||||||||||||||||  ||||||  ||||  ||||||  |||||||||||||  || || |||||    
T  2076596 gaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatccgtaactcgagtctcctttcttagtcttctttcgatcaccct 2076695  T
Q  274 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat 329  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  2076696 ttcccataacttcatggtatgactcgttagcttaattcccctataattcgcgcaat 2076751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 74 - 329
Target Start/End: Complemental strand, 20318251 - 20317996
Alignment:
Q  74 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 173  Q
    |||||||||||||  ||||||||||||||||||||  |||||| | |||||||||| |||||||||| |||||| || |||||||||||| |||||||||    
T  20318251 cacaaaatctctcccggtactctatcatacgccttttccaaattaatgaaaactaagtgcaagtcttatttatccgtccgatatcgctccatcacgcgtc 20318152  T
Q  174 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 273  Q
    ||||||||||| |  |||||||||||||||||||||||||||||||||||  ||||||| ||||  ||||||  |||||||||||||  || || |||||    
T  20318151 gaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatctgtaactcgagtctcctttcttagtcttctttcgatcaccct 20318052  T
Q  274 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat 329  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||| |||||||    
T  20318051 ttcccataacttcatggtatgactcattagcttaattccctaataatttgcgcaat 20317996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 74 - 329
Target Start/End: Complemental strand, 24177784 - 24177529
Alignment:
Q  74 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 173  Q
    |||||||||||||| |||||||||||||| |||||   ||||| | |||||||||| ||||||||||||||||| || |||||||||||| ||| |||||    
T  24177784 cacaaaatctctctcggtactctatcatatgcctttttcaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcatgcgtc 24177685  T
Q  174 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 273  Q
    ||||||||||| |  ||||| |||||||||| ||||||||||||||||||  ||||||  ||||  ||||||  |||||||||||||  || || |||||    
T  24177684 gaagtaagtagattgcttccgtagtcgaccttccaggcataaaaccaaattggttatccgtaactcgagtctcctttcttagtcttctttcgatcaccct 24177585  T
Q  274 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  24177584 ttcccataacttcatggtatgactcattagcttaattcccctataattcacgcaat 24177529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 120 - 329
Target Start/End: Original strand, 1288596 - 1288805
Alignment:
Q  120 tgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaacc 219  Q
    |||||||||| |||| |||||||||||| || |||||| ||||| |||||||||||||||||||| |  |||||| | |||||||||||| |||||||||    
T  1288596 tgaaaactaagtgcatgtcttttttatccgtccgatattgctccatcacgcgtcgaagtaagtagattgcttccacaatcgacctcccagccataaaacc 1288695  T
Q  220 aaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataa 319  Q
    ||||  ||||||  ||||  ||||||  |||||||||||||  || || ||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  1288696 aaattggttatccgtaactcgagtctcctttcttagtcttctttcgatcaccctttcccatagcttcatggtatgactcattaacttaattcccctataa 1288795  T
Q  320 ttcgcgcaat 329  Q
    ||||| ||||    
T  1288796 ttcgcacaat 1288805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 77 - 323
Target Start/End: Complemental strand, 27215 - 26970
Alignment:
Q  77 aaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaa 176  Q
    ||||||||| |||| | |||||||| ||||||| |||||| | |||||||||| ||||||||||||||||| ||||||||||||| | |||| ||| |||    
T  27215 aaaatctctttaggaaatctatcattcgccttctccaaatcaatgaaaactaagtgcaagtcttttttatccgttcgatatcgcttcatcacacgttgaa 27116  T
Q  177 gtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttc 276  Q
    |||||||| || ||||||||||||| ||  || |||||||||||||   ||||||  ||||   ||||| |||||||| | |||| ||||| ||||  |     
T  27115 gtaagtagatcgcttccatagtcgatct-tcaagcataaaaccaaaatggttatcagtaactcaagtcttttttcttaattttcgttcaatcacccgctt 27017  T
Q  277 ccataacttcatggtatgactcattagcttaattcccctataattcg 323  Q
    |||| |||||||||||||||||||||  |||||||||||||||||||    
T  27016 ccatgacttcatggtatgactcattaatttaattcccctataattcg 26970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 249 - 319
Target Start/End: Original strand, 22832091 - 22832161
Alignment:
Q  249 ttcttagtcttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataa 319  Q
    ||||||||||||  ||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  22832091 ttcttagtcttcattcaatcactttttcccataacttcatggtatgactcattagcttaattcccctataa 22832161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 74 - 313
Target Start/End: Complemental strand, 37123831 - 37123591
Alignment:
Q  74 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 173  Q
    |||||||||||| |||| ||||||||||||   ||| |||||| | |||||||||| ||||  |||||||||||  |||| ||||||| |||||  |||     
T  37123831 cacaaaatctctttaggaactctatcatacagtttctccaaatcaatgaaaactaagtgcacatcttttttatccattcgttatcgct-cctcatacgtt 37123733  T
Q  174 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattac--c 271  Q
    | ||||||||| ||||||| || |||||| || || |||||||||||| |   ||| |  |||| ||||||| ||||||||||||||  ||||| ||       
T  37123732 gtagtaagtagatcacttctatggtcgacatctcaagcataaaaccaatttgattaacaataacttgagtctcttttcttagtcttcattcaatcacttt 37123633  T
Q  272 ctttcccataacttcatggtatgactcattagcttaattccc 313  Q
     ||| ||||||||||||||||||| |||| || |||| ||||    
T  37123632 tttttccataacttcatggtatgaatcataagtttaactccc 37123591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 248 - 321
Target Start/End: Complemental strand, 25937183 - 25937109
Alignment:
Q  248 tttcttagtcttcgctcaattacccttt-cccataacttcatggtatgactcattagcttaattcccctataatt 321  Q
    |||| ||||||||||||||||| ||||| |||||||||||||||||||| |||| || ||||||  |||||||||    
T  25937183 tttcgtagtcttcgctcaattaaccttttcccataacttcatggtatgaatcataagtttaattgtcctataatt 25937109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 312
Target Start/End: Original strand, 756080 - 756214
Alignment:
Q  178 taagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcc 277  Q
    ||||||| || ||||||| ||  ||||| |||||||||||  ||||   ||||| ||| | ||||||| ||||||| |||| |||||||| || ||||||    
T  756080 taagtagatcgcttccattgttaacctctcaggcataaaattaaattgattatcgttaccttgagtctcttttctttgtctccgctcaatcactctttcc 756179  T
Q  278 cataacttcatggtatgactcattagcttaattcc 312  Q
    ||||||||  ||||| ||||| | || ||||||||    
T  756180 cataacttgttggtacgactcttaagtttaattcc 756214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 148; Significance: 5e-78; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 74 - 329
Target Start/End: Original strand, 51448731 - 51448986
Alignment:
Q  74 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 173  Q
    |||||||||||||| ||||||||||||||||||||  |||||| | |||||||||| ||||||||||||||||| || |||||||||||| |||||||||    
T  51448731 cacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtc 51448830  T
Q  174 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 273  Q
    ||||||| ||| |  |||||||||||||||||||||| ||||||||||||  ||||||  ||||  ||||||  |||||||||||||  || || |||||    
T  51448831 gaagtaaatagattgcttccatagtcgacctcccaggtataaaaccaaattggttatccgtaactcgagtctcctttcttagtcttctttcgatcaccct 51448930  T
Q  274 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat 329  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  51448931 ttcccataactttatggtatgactcattagcttaattcccctataattcgcgcaat 51448986  T

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Target: chr3; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 74 - 329
Target Start/End: Complemental strand, 52138088 - 52137833
Alignment:
Q  74 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 173  Q
    |||||||||||||| ||||||||||||||||||||  |||||| | |||||||||| |||||||||||||||||||| |||||||||||| |||||||||    
T  52138088 cacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatctgtccgatatcgctccatcacgcgtc 52137989  T
Q  174 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 273  Q
    ||||||||||| |  ||| |||| ||||||||||||||||||||||||||  ||||||  ||||  || |||  ||||| |||||||  || || |||||    
T  52137988 gaagtaagtagattgctttcatattcgacctcccaggcataaaaccaaattggttatccgtaactcgaatctcctttctgagtcttctttcgatcaccct 52137889  T
Q  274 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  52137888 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcacaat 52137833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 92 - 329
Target Start/End: Complemental strand, 38849344 - 38849107
Alignment:
Q  92 actctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcactt 191  Q
    |||||||| ||||||||| |||||| | |||||||||| || |||| ||||||||| || ||| ||| |||| ||| ||||| ||||||||||  | |||    
T  38849344 actctatcttacgccttctccaaatcaatgaaaactaagtgtaagtgttttttatccgtccgacatcactccgtcaagcgtcaaagtaagtagaccgctt 38849245  T
Q  192 ccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcccataacttcatggt 291  Q
    ||||||||||||||||||||||||||  |||| |||||||| ||||  |||||| ||||||||| ||||| ||||| || ||||||||||||||||||||    
T  38849244 ccatagtcgacctcccaggcataaaagaaaattagttatctgtaacccgagtctcttttcttagccttcgttcaatcactctttcccataacttcatggt 38849145  T
Q  292 atgactcattagcttaattcccctataattcgcgcaat 329  Q
    |||||||||||| ||||||||| |||||||||||||||    
T  38849144 atgactcattagtttaattcccttataattcgcgcaat 38849107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 79 - 322
Target Start/End: Complemental strand, 3369016 - 3368775
Alignment:
Q  79 aatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtctttttt-atctgttcgatatcgctccctcacgcgtcgaag 177  Q
    |||||||||||| |||||||||||| |||   |||||| |  ||||||||| |||||||||||||| ||| ||  ||||| ||||| ||| |||||||||    
T  3369016 aatctctctaggcactctatcatacacct---ccaaatcaaagaaaactaagtgcaagtctttttttatccgtctgatattgctccatcatgcgtcgaag 3368920  T
Q  178 taagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccctttcc 277  Q
    || |||| | |||| ||||||||| ||| || ||| | ||| |||| | ||||   ||||  |||||| ||||||||||||||| ||||| ||  |||||    
T  3368919 taggtagataactttcatagtcgatctcacaagcaaataactaaattaattataagtaactcgagtctcttttcttagtcttcgttcaatcacattttcc 3368820  T
Q  278 cataacttcatggtatgactcattagcttaattcccctataattc 322  Q
    |||||||||||||||||| | || || |||||||  |||||||||    
T  3368819 cataacttcatggtatgaattataagtttaattcttctataattc 3368775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 157 - 329
Target Start/End: Complemental strand, 27916753 - 27916583
Alignment:
Q  157 tcgctccctcacgcgtcgaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagt 256  Q
    ||||||| |||| ||| ||||||||||  |||| ||||| ||||||||   || |||||||||||||  ||||||  |||| || |||| |||||||| |    
T  27916753 tcgctccatcacacgtggaagtaagtaaatcacatccatggtcgacctt--agacataaaaccaaattggttatcactaacttgggtctcttttcttatt 27916656  T
Q  257 cttcgctcaattaccctttcccataacttcatggtatgactcattagcttaattcccctataattcgcgcaat 329  Q
    ||||| ||||| |||||||| ||||||||||||||||||||||| |  |||  ||||||||||||| ||||||    
T  27916655 cttcgttcaatcaccctttctcataacttcatggtatgactcatcaatttatatcccctataattcacgcaat 27916583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 77 - 144
Target Start/End: Complemental strand, 48221038 - 48220971
Alignment:
Q  77 aaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtctttttt 144  Q
    ||||| |||||||| | |||||||||||  ||| |||||| | |||||||||| ||||||||||||||    
T  48221038 aaaatatctctaggcaatctatcatacgttttctccaaatcaatgaaaactaagtgcaagtctttttt 48220971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 147
Target Start/End: Original strand, 50630343 - 50630414
Alignment:
Q  74 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatc 147  Q
    |||||||| |||| ||| |||||  |||| |||||| |||||| | |||||||||| |||||||||||||||||    
T  50630343 cacaaaatatctcgaggcactct--catatgccttctccaaatcaatgaaaactaagtgcaagtcttttttatc 50630414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 136; Significance: 7e-71; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 74 - 325
Target Start/End: Original strand, 13280 - 13531
Alignment:
Q  74 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 173  Q
    ||||||||||||||||| |||||||||||||||||| |||||| | |||||||||| || |||||||| ||||| ||   ||||||||||  ||||||||    
T  13280 cacaaaatctctctaggaactctatcatacgccttctccaaatcaatgaaaactaagtgtaagtctttattatccgtcatatatcgctccaccacgcgtc 13379  T
Q  174 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 273  Q
    ||||||||||| ||  ||||||||||||||||||| ||||||||||||||  ||||||  ||||  ||||||  | |||||||||||| ||||| ||| |    
T  13380 gaagtaagtagatcgtttccatagtcgacctcccaagcataaaaccaaattggttatccgtaactggagtcttctctcttagtcttcgttcaatcaccat 13479  T
Q  274 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcg 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13480 ttcccataacttcatggtatgactcattagcttaattcccctataattcgcg 13531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 74 - 282
Target Start/End: Complemental strand, 30728 - 30520
Alignment:
Q  74 cacaaaatctctctaggtactctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtc 173  Q
    |||||||||||||| ||||||||||||||||||||  |||| | | |||||||||| ||||||||||||||||| ||  ||||||||| | ||||||||     
T  30728 cacaaaatctctctcggtactctatcatacgccttttccaattcaatgaaaactaagtgcaagtcttttttatccgtctgatatcgcttcatcacgcgtt 30629  T
Q  174 gaagtaagtagttcacttccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaattaccct 273  Q
    ||||||||||| |  |||||||||||||||||||||||||||||||||||  ||||||  ||||  ||||||  |||||||||||||  ||||| |||||    
T  30628 gaagtaagtagattgcttccatagtcgacctcccaggcataaaaccaaattggttatccgtaactcgagtctcctttcttagtcttctttcaatcaccct 30529  T
Q  274 ttcccataa 282  Q
    |||||||||    
T  30528 ttcccataa 30520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 92 - 259
Target Start/End: Original strand, 90130 - 90297
Alignment:
Q  92 actctatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcactt 191  Q
    |||||||||||||||||| |||||| | |||||||||| || |||||||||||||| || ||||| |||||   |||  |||||| ||||||| ||||||    
T  90130 actctatcatacgccttctccaaatcaatgaaaactaagtgtaagtcttttttatccgtccgataacgctcgaccacatgtcgaattaagtagatcactt 90229  T
Q  192 ccatagtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtctt 259  Q
    ||||||| |||||||| ||||||||| |||||  ||||||  ||||  |||||| |||||||||||||    
T  90230 ccatagttgacctccctggcataaaatcaaattggttatccgtaactcgagtctcttttcttagtctt 90297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 96 - 213
Target Start/End: Complemental strand, 5685 - 5568
Alignment:
Q  96 tatcatacgccttccccaaataagtgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagtagttcacttccat 195  Q
    |||||||||||||| |||||||| |||||||||| ||| | | ||||||||| ||   |||||||||| |||| |||  ||||||| |  || |||| ||    
T  5685 tatcatacgccttctccaaataaatgaaaactaagtgcgattgttttttatcagtcaaatatcgctccatcacacgtttaagtaaggaaatcgcttcgat 5586  T
Q  196 agtcgacctcccaggcat 213  Q
    | ||||||||||| ||||    
T  5585 attcgacctcccatgcat 5568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 120 - 183
Target Start/End: Original strand, 25277 - 25340
Alignment:
Q  120 tgaaaactaattgcaagtcttttttatctgttcgatatcgctccctcacgcgtcgaagtaagta 183  Q
    |||||||||  ||||||||||||||||||||| |||||| |||  |||  ||||||||||||||    
T  25277 tgaaaactaggtgcaagtcttttttatctgtttgatatcactctatcaaacgtcgaagtaagta 25340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 267
Target Start/End: Original strand, 14931 - 15001
Alignment:
Q  197 gtcgacctcccaggcataaaaccaaataagttatctttaacatgagtctattttcttagtcttcgctcaat 267  Q
    |||||||||| || ||||||||||||| | ||||   ||| |||||||| |||| ||||||||||||||||    
T  14931 gtcgacctcctagacataaaaccaaattaattattgataatatgagtctcttttattagtcttcgctcaat 15001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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