View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6962_high_1 (Length: 785)

Name: NF6962_high_1
Description: NF6962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6962_high_1
NF6962_high_1
[»] scaffold1041 (1 HSPs)
scaffold1041 (21-769)||(838-1591)
[»] chr8 (14 HSPs)
chr8 (387-769)||(25391524-25391906)
chr8 (21-351)||(25390537-25390868)
chr8 (22-351)||(25357495-25357822)
chr8 (21-324)||(25676843-25677146)
chr8 (438-769)||(25617457-25617784)
chr8 (387-642)||(25358493-25358747)
chr8 (89-351)||(25493861-25494124)
chr8 (387-557)||(25678148-25678318)
chr8 (578-737)||(25494808-25494967)
chr8 (112-324)||(25663660-25663875)
chr8 (448-557)||(25494703-25494812)
chr8 (578-650)||(25678314-25678386)
chr8 (45-78)||(25663238-25663271)
chr8 (90-127)||(25663289-25663326)
[»] scaffold0466 (3 HSPs)
scaffold0466 (389-728)||(7955-8301)
scaffold0466 (726-769)||(7887-7930)
scaffold0466 (348-382)||(8105-8139)
[»] chr6 (1 HSPs)
chr6 (387-447)||(1094400-1094460)
[»] chr1 (1 HSPs)
chr1 (405-447)||(5716982-5717024)


Alignment Details
Target: scaffold1041 (Bit Score: 557; Significance: 0; HSPs: 1)
Name: scaffold1041
Description:

Target: scaffold1041; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 21 - 769
Target Start/End: Complemental strand, 1591 - 838
Alignment:
Q  21 ataatttctaacaggagnnnnnnnaatggtaaattttgtatgtaaattgttgtattagnnnnnnnnnnctttatcgggatttaaacccaatatctcctac 120  Q
    |||||||||||||||||       |||||||||||||||| |||||||||||||||||          ||||||||||||||||||||||||||||||||    
T  1591 ataatttctaacaggagtttttttaatggtaaattttgtacgtaaattgttgtattagttttttttttctttatcgggatttaaacccaatatctcctac 1492  T
Q  121 ttcttaactcttagctaaaaatagttcagctacccagatcccttcatttctaacgtaagttatattaaatctttttgattcatctgggatgaaccttttc 220  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||    
T  1491 ttcttaactcttagttaaaaatagttcagccacccagatcccttcatttctaacttaagttagattaaatctttttgatttatctgggatgaaccttttc 1392  T
Q  221 ttatcaactcagtcnnnnnnn-----atcaagaatgctattaatatttttgaacgttgggcattatttcatgatcgatgatgaatattgtcggaagcatt 315  Q
    ||||||||||||||            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  1391 ttatcaactcagtcttttttttttttatcaagaatgctattaatatttttgaacgttggacattatttcatgatcgatgatgaatattgtcggaagcatt 1292  T
Q  316 gtggctaatnnnnnnngacttattttttcaccctataggactccattcaaaaaggcatacttcttgttgatgaaaatttgctttcatttcagtggctttt 415  Q
    |||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  1291 gtggctaataaaaaaagacttattttttcaccctataggactccattcaaaaaggcatacttcttgtcgatgaaaatttgctttcatttcagtggctttt 1192  T
Q  416 tccacggcacaacatctctcttctatctttccgaaatctatttcctattaatatttcctacagtaatatcttgtttccctctcgctttttactttgtatc 515  Q
    |||||||  |||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  1191 tccacggtgcaacatctctcttctatctttccgaaatctatttcctaataatattttcaacagtaatatcttgtttccctctcgctttttactttgtatc 1092  T
Q  516 ccaatggtttcttaatgtatagttctttctataggaatccattcaaaaaggcatagttcttgtccatatgaggagctctcaactcatgtttttcaacttg 615  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||| |    
T  1091 ccaatggtttctaaatgtatagttctttctataggactccattcaaaaaggcacacttcttgtccatatgaggagctctcaactcgtgtttttcaactcg 992  T
Q  616 tgagagtactattcttatggtaatttgatgagcgacttgcgaaaaatactatatttcaatcaatcttttcagtgtagccttttgcaactattctttcctt 715  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  991 tgagagtactattcttacggtattttgatgagcgacttgcgaaaaatactatatttcaatcaatcttttcagtgtagccttttgcaactattctttcctt 892  T
Q  716 gtgtccttcattgcacactttctagacattggtagccttatgcttttttagaag 769  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  891 gtgtccttcattgcacactttctagacattggtagccttatgcttttttagaag 838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 387 - 769
Target Start/End: Original strand, 25391524 - 25391906
Alignment:
Q  387 gaaaatttgctttcatttcagtggctttttccacggcacaacatctctcttctatctttccgaaatctatttcctattaatatttcctacagtaatatct 486  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |    
T  25391524 gaaaatttgctttcattttagtgactttttccacggcacaacatctctcttctatctttccgaaatctatttcctattaatatttccaacagtaatatat 25391623  T
Q  487 tgtttccctctcgctttttactttgtatcccaatggtttcttaatgtatagttctttctataggaatccattcaaaaaggcatagttcttgtccatatga 586  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||    
T  25391624 tgtttccctctcgctttttactttgtatcccaatggtttcttaatgtatagttatttctataggaatccattcaaaaaggcatacttctcgtccatatga 25391723  T
Q  587 ggagctctcaactcatgtttttcaacttgtgagagtactattcttatggtaatttgatgagcgacttgcgaaaaatactatatttcaatcaatcttttca 686  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||  |    
T  25391724 ggagctctcaactcgtgtttttcaacttgtgagagtactattcttacggtattttgatgagagacttgcgaaaaatactatatttcaatcaatctttcaa 25391823  T
Q  687 gtgtagccttttgcaactattctttccttgtgtccttcattgcacactttctagacattggtagccttatgcttttttagaag 769  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25391824 gtgtagccttttgcaactattctttccttgtgtccttcattgcacactttctagacattggtagccttatgcttttttagaag 25391906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 21 - 351
Target Start/End: Original strand, 25390537 - 25390868
Alignment:
Q  21 ataatttctaacaggagnnnnnnnaatggtaaattttgtatgtaaattgttgtattagnnnnnnnnnn-ctttatcgggatttaaacccaatatctccta 119  Q
    |||||||||||||||||       ||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||| |||    
T  25390537 ataatttctaacaggagtttttttaatggtaaattttgtatgtaaattgttgtattagttattttttttctttatcgggatttaaacccaatatcttcta 25390636  T
Q  120 cttcttaactcttagctaaaaatagttcagctacccagatcccttcatttctaacgtaagttatattaaatctttttgattcatctgggatgaacctttt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25390637 cttcttaactcttagctaaaaatagttcagctacccagatcccttcatttctaacgtaagttatattaaatctttttgattcatctgggatgaacctttt 25390736  T
Q  220 cttatcaactcagtcnnnnnnnatcaagaatgctattaatatttttgaacgttgggcattatttcatgatcgatgatgaatattgtcggaagcattgtgg 319  Q
    |||||||||||||||       |||||||||| |||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||    
T  25390737 cttatcaactcagtctttttttatcaagaatgttattaatatttttgaacggttgccattatttcatgatcgatgatgaatattgtcggaagcattgtgg 25390836  T
Q  320 ctaatnnnnnnngacttattttttcaccctat 351  Q
    |||||       ||||||||||||||||||||    
T  25390837 ctaataaaaaaagacttattttttcaccctat 25390868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 22 - 351
Target Start/End: Original strand, 25357495 - 25357822
Alignment:
Q  22 taatttctaacaggagnnnnnnnaatggtaaattttgtatgtaaattgttgtattagnnnnnnnnnnctttatcgggatttaaacccaatatctcctact 121  Q
    ||||||||||||||||       ||||||||||||||||||||||||||||||||||          |||||| || |||||||||||||||||||||||    
T  25357495 taatttctaacaggagtttttttaatggtaaattttgtatgtaaattgttgtattagtttttttt--ctttattggaatttaaacccaatatctcctact 25357592  T
Q  122 tcttaactcttagctaaaaatagttcagctacccagatcccttcatttctaacgtaagttatattaaatctttttgattcatctgggatgaaccttttct 221  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  25357593 tcttaactcttagctaaaaataattcagctacccagatcccttcatttctaacgtaagttatattaaatctttttgattcatttgggatgaaccttttct 25357692  T
Q  222 tatcaactcagtcnnnnnnnatcaagaatgctattaatatttttgaacgttgggcattatttcatgatcgatgatgaatattgtcggaagcattgtggct 321  Q
    |||||||| ||||       |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  25357693 tatcaactgagtctttttttatcaagaatgctattaatatttttgaacgttgagcattatttcatgatcgatgatgaatattgtcggaagcattgtggct 25357792  T
Q  322 aatnnnnnnngacttattttttcaccctat 351  Q
    |||       ||||||||||||||||||||    
T  25357793 aataaaaaaagacttattttttcaccctat 25357822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 21 - 324
Target Start/End: Original strand, 25676843 - 25677146
Alignment:
Q  21 ataatttctaacaggagnnnnnnnaatggtaaattttgtatgtaaattgttgtattagnnnnnnnnnnctttatcgggatttaaacccaatatctcctac 120  Q
    |||||||||||||||||       |||| |||||||||||||||||||||||||||||          ||||||| ||||||||| ||||||||||||||    
T  25676843 ataatttctaacaggagtttttttaatgctaaattttgtatgtaaattgttgtattagttttttttttctttatcaggatttaaatccaatatctcctac 25676942  T
Q  121 ttcttaactcttagctaaaaatagttcagctacccagatcccttcatttctaacgtaagttatattaaatctttttgattcatctgggatgaaccttttc 220  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25676943 ttcttaactctcagctaaaaatagttcagctacccggatcccttcatttctaacgtaagttatattaaatctttttgattcatctgggatgaaccttttc 25677042  T
Q  221 ttatcaactcagtcnnnnnnnatcaagaatgctattaatatttttgaacgttgggcattatttcatgatcgatgatgaatattgtcggaagcattgtggc 320  Q
    ||||||||||||||       ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25677043 ttatcaactcagtctttttttatcaagaatgctattaatatttttgaatgttgggcattatttcatgatcgatgatgaatattgtcggaagcattgtggc 25677142  T
Q  321 taat 324  Q
    ||||    
T  25677143 taat 25677146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 438 - 769
Target Start/End: Original strand, 25617457 - 25617784
Alignment:
Q  438 ctatctttccgaaatctatttcctattaatatttcctacagtaatatcttgtttccctctcgctttttactttgtatcccaatggtttcttaatgtatag 537  Q
    |||||| ||||||||||||||||||||||||||||| ||  |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  25617457 ctatctatccgaaatctatttcctattaatatttccaacgctaatatcttgtttccctctcactttttactttgtatccctatggtttcttaatgtatag 25617556  T
Q  538 ttctttctataggaatccattcaaaaaggcatagttcttgtccatatgaggagctctcaactcatgtttttcaacttgtgagagtactattcttatggt- 636  Q
                || | |||||||||||||||| |||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||     
T  25617557 ------------gactgcattcaaaaaggcatacttctcgcccatatgaggagctctcaactcgtgtttttcaacttgtgagagtactattcttacggta 25617644  T
Q  637 aatttgatgagcgacttgcgaaaaatactatatttcaatcaatctt-------ttcagtgtagccttttgcaactattctttccttgtgtccttcattgc 729  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||    
T  25617645 aatttgatgagcgacttgcaaaaaatactatatttcaatcaatcttttcagacttcagtgtagccttttgcaactattctttccttgtgtccttcattgc 25617744  T
Q  730 acactttctagacattggtagccttatgcttttttagaag 769  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  25617745 acactttctagaaattggtagccttatgcttttttagaag 25617784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 387 - 642
Target Start/End: Original strand, 25358493 - 25358747
Alignment:
Q  387 gaaaatttgctttcatttcagtggctttttccacggcacaacatctctcttctatctttccgaaatctatttcctattaatatttcctacagtaatatct 486  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |    
T  25358493 gaaaatttgctttcatttcagtgactttttccacggcacaacatctctcttctatctttccaaaatctatttcctattaatatttccaacagtaatatat 25358592  T
Q  487 tgtttccctctcgctttttactttgtatcccaatggtttcttaatgtatagttctttctataggaatccattcaaaaaggcatagttcttgtccatatga 586  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||| ||||||||||    
T  25358593 tgtttacctctcgctttttactttgtatcccaatggtttcttaatgtacag-tctttctataggaatccattcaaaaaggcatacttctcgtccatatga 25358691  T
Q  587 ggagctctcaactcatgtttttcaacttgtgagagtactattcttatggtaatttg 642  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||    
T  25358692 ggagctctcaactcgtgtttttcaacttgtgagagtactattcttacggtattttg 25358747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 89 - 351
Target Start/End: Original strand, 25493861 - 25494124
Alignment:
Q  89 ctttatcgggatttaaacccaatatctcctacttcttaactcttagctaaaaatagttcagctacccagatcccttcatttctaacgtaagttatattaa 188  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  25493861 ctttatcggaatttaaacccaatatctcctacttcttaactcttagctaaaaatagttcagctacccagatcccttcatttctaacttaagttatattaa 25493960  T
Q  189 atctttttgattcatctgggatgaaccttttcttatcaactcagtc-nnnnnnnatcaagaatgctattaatatttttgaacgttgggcattatttcatg 287  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||    
T  25493961 atctttttgattcatctaggatgaaccttttcttatcaactcagtcttttttttatcaagaatgctattaatatttttgaacgttgggcattatttcatg 25494060  T
Q  288 atcgatgatgaatattgtcggaagcattgtggctaatnnnnnnngacttattttttcaccctat 351  Q
    |||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||    
T  25494061 atcgatgatgaatattgtcggaagcattgtggctaataaaaaaagacttattttttcaccctat 25494124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 387 - 557
Target Start/End: Original strand, 25678148 - 25678318
Alignment:
Q  387 gaaaatttgctttcatttcagtggctttttccacggcacaacatctctcttctatctttccgaaatctatttcctattaatatttcctacagtaatatct 486  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  25678148 gaaaatttgctttcatttcagtggctttttccacgacacaacatctctcttctatctttccgaaatctatttcctattaatatttccaacagtaatatct 25678247  T
Q  487 tgtttccctctcgctttttactttgtatcccaatggtttcttaatgtatagttctttctataggaatccat 557  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  25678248 tgtttccctctcgctttttactttgtatcccaatggtttcttaatgtataattctttctataggaatccat 25678318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 578 - 737
Target Start/End: Original strand, 25494808 - 25494967
Alignment:
Q  578 tccatatgaggagctctcaactcatgtttttcaacttgtgagagtactattcttatggtaatttgatgagcgacttgcgaaaaatactatatttcaatca 677  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  25494808 tccatatgaggagctctcaactcatgtttttcaatttgtgagattactattcttatggtaatttgatgagcgacttgcgaaaaatactaaatttcaatca 25494907  T
Q  678 atcttttcagtgtagccttttgcaactattctttccttgtgtccttcattgcacactttc 737  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25494908 atcttttcagtgtagccttttgcaactattctttccttgtgtccttcattgcacactttc 25494967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 112 - 324
Target Start/End: Original strand, 25663660 - 25663875
Alignment:
Q  112 atctcctacttcttaactcttagctaaaaatagttcagctacccagatcccttcatttctaacgtaagttatattaaatctttttgattcatctgggatg 211  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||    
T  25663660 atctcctacttcttaacccttagctaaaaatagttcagctatccagatcccttcatttctaacgcaagttatattaaatctttttgattcatctggg-tg 25663758  T
Q  212 aaccttttcttatcaactcagtc----nnnnnnnatcaagaatgctattaatatttttgaacgttgggcattatttcatgatcgatgatgaatattgtcg 307  Q
    || ||||| ||||||||||||||           || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||    
T  25663759 aatctttttttatcaactcagtctttttttttttatgaagaatgctattaatatttttgaactttgggcattatttcatgatcgatgatgaatattatcg 25663858  T
Q  308 gaagcattgtggctaat 324  Q
    |||||||||||||||||    
T  25663859 gaagcattgtggctaat 25663875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 448 - 557
Target Start/End: Original strand, 25494703 - 25494812
Alignment:
Q  448 gaaatctatttcctattaatatttcctacagtaatatcttgtttccctctcgctttttactttgtatcccaatggtttcttaatgtatagttctttctat 547  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  25494703 gaaatctatttcctattaatatttccaacagtaatatattgtttccctctcgctttttactttgtatcccaatggtttcttaatgtataattctttctat 25494802  T
Q  548 aggaatccat 557  Q
    ||||||||||    
T  25494803 aggaatccat 25494812  T

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Target: chr8; HSP #12
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 578 - 650
Target Start/End: Original strand, 25678314 - 25678386
Alignment:
Q  578 tccatatgaggagctctcaactcatgtttttcaacttgtgagagtactattcttatggtaatttgatgagcga 650  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  25678314 tccatatgaggagctctcaactcatgtttttcaacttgtgaaagtactattcttacggtaatttgatgagcga 25678386  T

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Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 78
Target Start/End: Original strand, 25663238 - 25663271
Alignment:
Q  45 aatggtaaattttgtatgtaaattgttgtattag 78  Q
    ||||||||||||| ||||||||||||||||||||    
T  25663238 aatggtaaattttctatgtaaattgttgtattag 25663271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 25663289 - 25663326
Alignment:
Q  90 tttatcgggatttaaacccaatatctcctacttcttaa 127  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  25663289 tttatcgggatttaaacccaatatctcctgctttttaa 25663326  T

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Target: scaffold0466 (Bit Score: 238; Significance: 1e-131; HSPs: 3)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 389 - 728
Target Start/End: Complemental strand, 8301 - 7955
Alignment:
Q  389 aaatttgctttcatttcagtggctttttccacggcacaacatctctcttctatctttc---------cgaaatctatttcctattaatatttcctacagt 479  Q
    ||||||||||||||  |||| |||||| ||||||| ||||| ||||||||||||||||         ||||  ||||||||||||||||||||| |||||    
T  8301 aaatttgctttcatggcagttgcttttgccacggcgcaacaactctcttctatctttcgtatctatccgaa--ctatttcctattaatatttccaacagt 8204  T
Q  480 aatatcttgtttccctctcgctttttactttgtatcccaatggtttcttaatgtatagttctttctataggaatccattcaaaaaggcatagttcttgtc 579  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  8203 aatatcttgtttccctctcacttttcactttgtatcccaatggtttctaaatgtatagttctttctataggactccattcaaaaaggcatagttcttgtc 8104  T
Q  580 catatgaggagctctcaactcatgtttttcaacttgtgagagtactattcttatggtaatttgatgagcgacttgcgaaaaatactatatttcaatcaat 679  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  8103 catatgaggagctctcaactcgtgtttttcaacttgtgagagtactattcttatggtattttgatgagtgacttgcgaaaaatactatatttcaatcaat 8004  T
Q  680 cttttcagtgtagccttttgcaactattctttccttgtgtccttcattg 728  Q
     |||||||  |||||||||||||||||||||||||||||||||||||||    
T  8003 attttcagcttagccttttgcaactattctttccttgtgtccttcattg 7955  T

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Target: scaffold0466; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 726 - 769
Target Start/End: Complemental strand, 7930 - 7887
Alignment:
Q  726 ttgcacactttctagacattggtagccttatgcttttttagaag 769  Q
    |||||||||||||||||||||||||||||| |||||||||||||    
T  7930 ttgcacactttctagacattggtagccttaggcttttttagaag 7887  T

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Target: scaffold0466; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 348 - 382
Target Start/End: Complemental strand, 8139 - 8105
Alignment:
Q  348 ctataggactccattcaaaaaggcatacttcttgt 382  Q
    ||||||||||||||||||||||||||| |||||||    
T  8139 ctataggactccattcaaaaaggcatagttcttgt 8105  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 387 - 447
Target Start/End: Complemental strand, 1094460 - 1094400
Alignment:
Q  387 gaaaatttgctttcatttcagtggctttttccacggcacaacatctctcttctatctttcc 447  Q
    |||||||||||||||   ||||| |||||  |||||||||||| |||||||||||||||||    
T  1094460 gaaaatttgctttcaggacagtgacttttgtcacggcacaacaactctcttctatctttcc 1094400  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 405 - 447
Target Start/End: Original strand, 5716982 - 5717024
Alignment:
Q  405 cagtggctttttccacggcacaacatctctcttctatctttcc 447  Q
    |||||| |||| ||||||||||||| |||||||||||||||||    
T  5716982 cagtggtttttaccacggcacaacaactctcttctatctttcc 5717024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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