View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6962_high_10 (Length: 398)
Name: NF6962_high_10
Description: NF6962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6962_high_10 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 46565442 - 46565831
Alignment:
| Q |
1 |
ttgataatattcaaggagtcgtactgttgcagtgtacactaaatgtgaacatcttgggtggagtctatattcgaaaattaattagtttgccataaatata |
100 |
Q |
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| T |
46565442 |
ttgataatattcaaggagtcgtactgttgcagtgtacactaaatgtgaacatcttaggtggagtctatattcgaaaattaattagtttgccataa----- |
46565536 |
T |
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| Q |
101 |
atagactggtcccatcaa-ctattctagtatatattttttcttgacacaaaatatactagtatcttgtatagagttagtgggataaaacatgaataattt |
199 |
Q |
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| T |
46565537 |
-tagactggtcccatcaaactattctagtatatattttttcttgacacaaaatatactagtatcttgtatagagttagtgggataaaacatgaataattt |
46565635 |
T |
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| Q |
200 |
actaactagtgacaatgtcattttctattaattagtggctagctagtgggaaattaatcaaaataacaatgatgatgatgatgcataataatatacctat |
299 |
Q |
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| T |
46565636 |
actaactagtgacagtgtcattttctattaattagtggctagctagtgggaaattaaacaaaataacaatgatgatgatgatgc---ataatatacctat |
46565732 |
T |
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| Q |
300 |
gcactggctgaagcgcgttttggggagttttccatcaacttccaattcatcaaatcgcttctccacctgagaccaaccacgatcagtaccagcgttttt |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
46565733 |
gcactggctgaagcgcgttttggggagttttccatcaacttccaattcatcaaatcgcttctccacctgagaccaaccacgatcagtaccaacgttttt |
46565831 |
T |
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