View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6962_high_15 (Length: 339)
Name: NF6962_high_15
Description: NF6962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6962_high_15 |
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| [»] scaffold0020 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 30200245 - 30199921
Alignment:
| Q |
1 |
tttgcagtcatgcaccaaggttgcacttgattttgtctctcctgaaaatgttggcgagtgctttcgtttgacagaggaattccgcaaacttccagtaaat |
100 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30200245 |
tttgcagtcatgcaccaaggttgcccttgattttgtctctcctgaaaatgttggcgagtgctttcgtttgacagaggaattccgcaaacttccagtaaat |
30200146 |
T |
|
| Q |
101 |
cacaagtctgcagaggacaaattggaggtattattccatgctacttttgttgatttgattatgctgtttatacacttatccaatattgagatattgcatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30200145 |
cacaagtctgcagaggacaaattggaggtattattccatgctacttttgttgatttgattatgctgtttatacacttatccaatattgagatattgcatc |
30200046 |
T |
|
| Q |
201 |
tctgttttgttattagcttctttcaactagatttcattatagccctatagctattttagaatctgggcttggcctactggaacaatttggactgttgtta |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30200045 |
tctgttttgttattagcttctttcaactagatttcattatagcccaatagctattttagaatctgggcttggcctactggaacaatttggactgttgtta |
30199946 |
T |
|
| Q |
301 |
gctttcagttgcacctagtgatgtc |
325 |
Q |
| |
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|||||||||| |||||||||||||| |
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| T |
30199945 |
gctttcagttacacctagtgatgtc |
30199921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 51506811 - 51507080
Alignment:
| Q |
1 |
tttgcagtcatgcaccaaggttgcacttgattttgtctctcctgaaaatgttggcgagtgctttcgtttgacagaggaattccgcaaacttccagtaaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
51506811 |
tttgcagtcatgcaccaaggttgcacttgattttgtctctcctgaaaatgttggtgagtgctttcgtttgacagaggaattccgtaaacttccggtaaat |
51506910 |
T |
|
| Q |
101 |
cacaagtctgcagaggacaaattggaggtattattccatgctacttttgttgatttgattatgctgtttatacacttatccaatattgagatattgcatc |
200 |
Q |
| |
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|||| ||| ||||||||||||||||||||| ||||| ||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
51506911 |
cacaggtccacagaggacaaattggaggtatgt---catgccacttttgttgaattgattcagctgtttatacacttgtccaatattgagatattgcatg |
51507007 |
T |
|
| Q |
201 |
t-ctgttttgttattagcttctttcaactagattt-cattatagccctatagctattttagaatctgggcttg |
271 |
Q |
| |
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| || ||| || |||||||||||||||||| ||| ||||||||| ||||| ||||||||| |||||||| |
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| T |
51507008 |
tcctatttcgtcgttagcttctttcaactaggtttatattatagcctaatagcagttttagaatttgggcttg |
51507080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 2 - 104
Target Start/End: Original strand, 51463334 - 51463436
Alignment:
| Q |
2 |
ttgcagtcatgcaccaaggttgcacttgattttgtctctcctgaaaatgttggcgagtgctttcgtttgacagaggaattccgcaaacttccagtaaatc |
101 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||| || |||| |||||||| ||||||||||||||||||||||| ||||| |||||| |
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| T |
51463334 |
ttgcagtcatgcatcaaggttgcacttgattttgtctctcctgaacatattggtgagtgcttccgtttgacagaggaattccgcaagcttccgataaatc |
51463433 |
T |
|
| Q |
102 |
aca |
104 |
Q |
| |
|
||| |
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| T |
51463434 |
aca |
51463436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 51486058 - 51486150
Alignment:
| Q |
1 |
tttgcagtcatgcaccaaggttgcacttgattttgtctctcctgaaaatgttggcgagtgctttcgtttgacagaggaattccgcaaacttcc |
93 |
Q |
| |
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|||| ||||||||| |||||| | ||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||| || ||||| |
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| T |
51486058 |
tttgtagtcatgcatcaaggtcggacttgattttgtctcacctgaaaatgttggcgagtgcttccgtttgactgaggaattccgtaagcttcc |
51486150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 5 - 131
Target Start/End: Original strand, 27401313 - 27401439
Alignment:
| Q |
5 |
cagtcatgcaccaaggttgcacttgattttgtctctcctgaaaatgttggcgagtgctttcgtttgacagaggaattccgcaaacttccagtaaatcaca |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
27401313 |
cagtcatgcaccaaggttgcacttgattttgtctctcctgaaaatgttggtgagtgcttccgtttgacagaggaattccgcaaacttccagtaaatcaca |
27401412 |
T |
|
| Q |
105 |
agtctgcagaggacaaattggaggtat |
131 |
Q |
| |
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||| |||||||||||||||||||| |
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| T |
27401413 |
ggtccatagaggacaaattggaggtat |
27401439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 20865785 - 20865655
Alignment:
| Q |
1 |
tttgcagtcatgcaccaaggttgcacttgattttgtctctcctgaaaatgttggcgagtgctttcgtttgacagaggaattccgcaaacttccagtaaat |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||| || || ||||| ||||||||||||||| |||| ||||||||||||||| |
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| T |
20865785 |
tttgcagtcgtgcaccaaggttgcacttgattttgtctctcctgaaaatgtcggtgaatgcttccgtttgacagaggaaatccgtaaacttccagtaaat |
20865686 |
T |
|
| Q |
101 |
cacaagtctgcagaggacaaattggaggtat |
131 |
Q |
| |
|
||| | | |||||||||||||| |||||| |
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| T |
20865685 |
cactatttcacagaggacaaattgcaggtat |
20865655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 2 - 103
Target Start/End: Complemental strand, 134536 - 134435
Alignment:
| Q |
2 |
ttgcagtcatgcaccaaggttgcacttgattttgtctctcctgaaaatgttggcgagtgctttcgtttgacagaggaattccgcaaacttccagtaaatc |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||| |||||||||||||||| |
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| T |
134536 |
ttgcagtcatgcaccaaggttgcacttgattttgtctctcctgaaaatgctggcgagtgcttgcgtttgacagaggaaatccgtaaacttccagtaaatc |
134437 |
T |
|
| Q |
102 |
ac |
103 |
Q |
| |
|
|| |
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|
| T |
134436 |
ac |
134435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 5 - 131
Target Start/End: Original strand, 5178823 - 5178949
Alignment:
| Q |
5 |
cagtcatgcaccaaggttgcacttgattttgtctctcctgaaaatgttggcgagtgctttcgtttgacagaggaattccgcaaacttccagtaaatcaca |
104 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||| | |||||||||||||||||| |||||| |||||||||||| |
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| T |
5178823 |
cagtcatgcgccaaggttgcacttgattttgtctctcctgaaaacgttggtgagtgcttccatttgacagaggaattccggaaacttacagtaaatcaca |
5178922 |
T |
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| Q |
105 |
agtctgcagaggacaaattggaggtat |
131 |
Q |
| |
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||| |||||||||||||||||||| |
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| T |
5178923 |
ggtccatagaggacaaattggaggtat |
5178949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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