View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6962_high_17 (Length: 319)
Name: NF6962_high_17
Description: NF6962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6962_high_17 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 47176368 - 47176545
Alignment:
| Q |
1 |
attattctaagtcaaaaaccatcattctcttataaatgaaggagaaagagaacttnnnnnnnntacagggtttttctctttnnnnnnncaagggccgaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||| |||||||||||| |
|
|
| T |
47176368 |
attattctaagtcaaaaaccatcattctcttataaatgaaggagaaattgaactt-aaaaaaatacagggtttctctctttaaaaaaacaagggccgaca |
47176466 |
T |
|
| Q |
101 |
acatatcctgcatacttg--------atatatataatttttaaaaggata-ttgatactagatggccattttttgcagg |
170 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
47176467 |
acatatcctgcatacttgatatatatatatatatattttttaaaaggatacttgatactagatggccattttttgcagg |
47176545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 216 - 299
Target Start/End: Original strand, 47176549 - 47176632
Alignment:
| Q |
216 |
gcctttaaaattactatttgttatcattatattagaatcattaatttctctcctaaataaaattgaccatgcataatgtgtgag |
299 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47176549 |
gcctttaaaatcactatatgttatcattatattagaatcatcaattactctcctaaataaaattgaccatgcataatgtgtgag |
47176632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University