View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6962_high_2 (Length: 729)
Name: NF6962_high_2
Description: NF6962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6962_high_2 |
 | |
|
| [»] scaffold0110 (1 HSPs) |
| | |
|
| [»] scaffold2177 (1 HSPs) |
| | |
|
| [»] scaffold0014 (1 HSPs) |
| | |
|
| [»] scaffold0177 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 687; Significance: 0; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 687; E-Value: 0
Query Start/End: Original strand, 16 - 726
Target Start/End: Original strand, 24898326 - 24899036
Alignment:
| Q |
16 |
cataatgtcatgattaatgggctttgtaaagagggcttgtttgacgaagcattgtttgtactgtctgaaatggaagacaatggttgcacgcctgatgttg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
24898326 |
cataatgtcatgattaatgggctttgtaaagagggcttgtttgacgaagcattgtttgtactgtccgaaatggaagacaatggttgcacacctgatgttg |
24898425 |
T |
|
| Q |
116 |
taacttacgaaactcttatctgtgctttgttcaaaaacgacatgaatgataaggccgtgaaactcctccgtgaaatgctttctagaggtctactgtaaga |
215 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24898426 |
taacttacaaaactcttatccgtgctttgttcaaaaacgacatgaatgataaggccgtgaaactcctccgtgaaatgctttctagaggtctactgtaaga |
24898525 |
T |
|
| Q |
216 |
gtaaaactagtgagttgttttctagttacaatctgttattctgaatttgaaataacaaattgttagtctatgacacataaaaaggaaattggactaaaca |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24898526 |
gtaaaactagtgagttgttttctagttacaatctgttattctgaatttgaaataacaaattgttagtctatgacacataaaaaggaaattggactaaaca |
24898625 |
T |
|
| Q |
316 |
tagttttggtaaaaaacagttgctgtaaggttcatactgatgtgttaataatagttgaaaatatgatttgttatcttgtttcgacatcttgtagctggga |
415 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24898626 |
tagttttggtaaaaaacagctgctgtaaggttcatactgatgtgttaataatagttgaaaatatgatttgttatcttgtttcgacatcttgtagctggga |
24898725 |
T |
|
| Q |
416 |
cagttacttttatagtcagataaaaaccatgtatagaataatgataactctggatttgaattgagttatttttccctatgcttgctgtaaagatcatcat |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24898726 |
cagttacttttatagtcagataaaaaccatgtatagaataatgataactctggatttgaattgagttatttttccctatgcttgctgtaaagatcatcat |
24898825 |
T |
|
| Q |
516 |
gacatcttcatgatttctttttcattgcagaatttgttattatgatgccttcaaatcaaacaacatcattgtttgcacattcttgattctgattcgtgca |
615 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
24898826 |
gacatcttcatgatttctttttcattgcagaatttgttattatgatgccttcaaatcaaacaacatcattgtttgcacactcttgattctgattcgtgca |
24898925 |
T |
|
| Q |
616 |
aatgtaaagttcgctcagtgttattattatagcttcaatgtgattgtccacatcctccccgtatacaattgatgcttctcactgtagtgctccataattc |
715 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24898926 |
aatgtaaagttcgctcagtgttattattatagcttcaatgtgattgtccacatcctccccgtatacaattgatgcttctcactgtagtgctccataattc |
24899025 |
T |
|
| Q |
716 |
ctgaccttctt |
726 |
Q |
| |
|
||||||||||| |
|
|
| T |
24899026 |
ctgaccttctt |
24899036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 26 - 247
Target Start/End: Complemental strand, 24738935 - 24738713
Alignment:
| Q |
26 |
tgattaatgggctttgtaaagagggcttgtttgacgaagcattgtttgtactgtctgaaatggaagacaatggttgcacgcctgatgttgtaacttacga |
125 |
Q |
| |
|
|||||||||| |||||| ||||| ||||||| || ||||||||| ||||||| |||||||||||||||||||||| ||| || |||||||| ||| |
|
|
| T |
24738935 |
tgattaatggcctttgttaagagagcttgttcgataaagcattgtccttactgtcaaaaatggaagacaatggttgcacccctaatcctgtaactttcga |
24738836 |
T |
|
| Q |
126 |
aactcttatctgtgctttgttcaaaaacgacatgaatgataaggccgtgaaactcctccgtgaaatgctttctagaggtctactgtaagagtaaaacta- |
224 |
Q |
| |
|
|| ||||||| |||||||||| |||||||||||||||||||||| ||| |||| || ||||||||| || ||||||||||||| ||||| |||||| | |
|
|
| T |
24738835 |
aattcttatccgtgctttgtttgaaaacgacatgaatgataaggcagtggaacttcttcgtgaaatgattgctagaggtctactataagaataaaacaag |
24738736 |
T |
|
| Q |
225 |
gtgagttgttttctagttacaat |
247 |
Q |
| |
|
||||| || ||| |||||||||| |
|
|
| T |
24738735 |
gtgagatgctttttagttacaat |
24738713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 17 - 213
Target Start/End: Original strand, 30053677 - 30053874
Alignment:
| Q |
17 |
ataatgtcatgattaa-tgggctttgtaaagagggcttgtttgacgaagcattgtttgtactgtctgaaatggaagacaatggttgcacgcctgatgttg |
115 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||| || || || |||||||||| |||| || ||||||||||||| ||||||| |||||||| || |
|
|
| T |
30053677 |
ataatgtgatgattaaatgggctttgtaaagagggttttttcgatgaagcattgtccttactctcacaaatggaagacaacggttgcatgcctgatgctg |
30053776 |
T |
|
| Q |
116 |
taacttacgaaactcttatctgtgctttgttcaaaaacgacatgaatgataaggccgtgaaactcctccgtgaaatgctttctagaggtctactgtaa |
213 |
Q |
| |
|
|||| |||||||||||||| |||||||||||| ||||||||| |||||||||||| ||| ||| || ||||||||| || |||| ||||||||||| |
|
|
| T |
30053777 |
taacatacgaaactcttatttgtgctttgttcgaaaacgacaagaatgataaggcgctgacacttcttcgtgaaatgattgttagacgtctactgtaa |
30053874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 17 - 213
Target Start/End: Original strand, 24934917 - 24935113
Alignment:
| Q |
17 |
ataatgtcatgattaatgggctttgtaaagagggcttgtttgacgaagcattgtttgtactgtctgaaatggaagacaatggttgcacgcctgatgttgt |
116 |
Q |
| |
|
||||||| ||| | ||||||||||||||||||||||||||||| |||||| ||| || |||| ||||||||||||| ||||||| ||||||| ||| |
|
|
| T |
24934917 |
ataatgtgatggtcaatgggctttgtaaagagggcttgtttgatgaagcactgtccttagtgtcaaaaatggaagacaacggttgcatacctgatgctgt |
24935016 |
T |
|
| Q |
117 |
aacttacgaaactcttatctgtgctttgttcaaaaacgacatgaatgataaggccgtgaaactcctccgtgaaatgctttctagaggtctactgtaa |
213 |
Q |
| |
|
|||||| ||||||||| || ||||||||||| | ||||| | |||||||||||| |||||||| || ||||||||| || |||||||| || ||||| |
|
|
| T |
24935017 |
aacttatgaaactcttgtccgtgctttgttcgagaacgataagaatgataaggcggtgaaacttctacgtgaaatgattgctagaggtatattgtaa |
24935113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 17 - 263
Target Start/End: Complemental strand, 29953443 - 29953197
Alignment:
| Q |
17 |
ataatgtcatgattaatgggctttgtaaagagggcttgtttgacgaagcattgtttgtactgtctgaaatggaagacaatggttgcacgcctgatgttgt |
116 |
Q |
| |
|
||||||| ||| |||||| | |||||||||| || || |||||||| ||||||| ||||||| |||||||||||||||||||||| || |||| | |
|
|
| T |
29953443 |
ataatgtgatggttaatgagttttgtaaagaaggtttatttgacgaggcattgtccttactgtcaaaaatggaagacaatggttgcaccccagatgcgat |
29953344 |
T |
|
| Q |
117 |
aacttacgaaactcttatctgtgctttgttcaaaaacgacatgaatgataaggccgtgaaactcctccgtgaaatgctttctagaggtctactgtaagag |
216 |
Q |
| |
|
||||||| |||||||||| |||||||||||| ||||| ||| |||||||||||| || ||||| || ||||||||| || |||||||||||| ||| | |
|
|
| T |
29953343 |
aacttaccaaactcttatttgtgctttgttcgaaaacaacaagaatgataaggctgttaaacttcttcgtgaaatgattgttagaggtctactataa-tg |
29953245 |
T |
|
| Q |
217 |
taaaacta-gtgagttgttttctagttacaatctgttattctgaattt |
263 |
Q |
| |
|
|||||||| ||||| || |||| ||||| ||| ||||||| ||||||| |
|
|
| T |
29953244 |
taaaactaggtgagatgctttcaagttaaaatttgttattttgaattt |
29953197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 17 - 263
Target Start/End: Complemental strand, 29949646 - 29949400
Alignment:
| Q |
17 |
ataatgtcatgattaatgggctttgtaaagagggcttgtttgacgaagcattgtttgtactgtctgaaatggaagacaatggttgcacgcctgatgttgt |
116 |
Q |
| |
|
||||||| ||| |||||| | |||||||||| || || |||||||| ||||||| ||||||| |||||||||||||||||||||| || ||| | |
|
|
| T |
29949646 |
ataatgtgatggttaatgagttttgtaaagaaggtttatttgacgaggcattgtccttactgtcaaaaatggaagacaatggttgcaccccaaatgcgat |
29949547 |
T |
|
| Q |
117 |
aacttacgaaactcttatctgtgctttgttcaaaaacgacatgaatgataaggccgtgaaactcctccgtgaaatgctttctagaggtctactgtaagag |
216 |
Q |
| |
|
||||||| |||||||||| |||||||||||| ||||| ||| |||||||||||| || ||||| || ||||||||| || |||||||||||| ||| | |
|
|
| T |
29949546 |
aacttaccaaactcttatttgtgctttgttcgaaaacaacaagaatgataaggctgttaaacttcttcgtgaaatgattgttagaggtctactataa-tg |
29949448 |
T |
|
| Q |
217 |
taaaacta-gtgagttgttttctagttacaatctgttattctgaattt |
263 |
Q |
| |
|
|||||||| ||||| || |||| ||||| ||| ||||||| ||||||| |
|
|
| T |
29949447 |
taaaactaggtgagatgctttcaagttaaaatttgttattttgaattt |
29949400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 17 - 267
Target Start/End: Original strand, 30135376 - 30135626
Alignment:
| Q |
17 |
ataatgtcatgattaatgggctttgtaaagagggcttgtttgacgaagcattgtttgtactgtctgaaatggaagacaatggttgcacgcctgatgttgt |
116 |
Q |
| |
|
||||||| ||| ||||| |||| ||||||||||| |||||||| |||||||||| || |||| |||||||| |||| |||||| ||||||||||| |
|
|
| T |
30135376 |
ataatgtgatggttaattggctctgtaaagagggtttgtttgatgaagcattgtccatattgtcaaaaatggaacacaacaattgcacccctgatgttgt |
30135475 |
T |
|
| Q |
117 |
aacttacgaaactcttatctgtgctttgttcaaaaacgacatgaatgataaggccgtgaaactcctccgtgaaatgctttctagaggtctactgtaagag |
216 |
Q |
| |
|
||||||||||| | ||||| ||||||| |||||||| | | |||||||||||| |||||||| || |||||||| || |||||||||||||||| |
|
|
| T |
30135476 |
aacttacgaaattgttatccgtgctttattcaaaaatgttaagaatgataaggcagtgaaacttctttgtgaaatgattgatagaggtctactgtaa-tc |
30135574 |
T |
|
| Q |
217 |
taaaactag-tgagttgttttctagttacaatctgttattctgaatttgaaa |
267 |
Q |
| |
|
||||||||| |||| || |||| ||||||||| || | || ||||||||||| |
|
|
| T |
30135575 |
taaaactagttgagatgctttcaagttacaatttgcttttttgaatttgaaa |
30135626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 25 - 222
Target Start/End: Complemental strand, 21160366 - 21160169
Alignment:
| Q |
25 |
atgattaatgggctttgtaaagagggcttgtttgacgaagcattgtttgtactgtctgaaatggaagacaatggttgcacgcctgatgttgtaacttacg |
124 |
Q |
| |
|
||||||||||| |||||||||||| ||||||| || ||||||| | ||||||| ||||| |||||||||||||||| ||| || |||||||| || |
|
|
| T |
21160366 |
atgattaatggcctttgtaaagagagcttgttcgataaagcattatccttactgtcaaaaatgaaagacaatggttgcacccctaatcctgtaactttcg |
21160267 |
T |
|
| Q |
125 |
aaactcttatctgtgctttgttcaaaaacgacatgaatgataaggccgtgaaactcctccgtgaaatgctttctagaggtctactgtaagagtaaaac |
222 |
Q |
| |
|
||| ||||||| |||||||||| |||||||||||||||||||||| ||| |||| || ||| ||||| || ||||| |||||| ||||| |||||| |
|
|
| T |
21160266 |
aaattcttatccgtgctttgtttgaaaacgacatgaatgataaggcagtggaacttcttcgtaaaatgattgttagagatctactataagaataaaac |
21160169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 25 - 255
Target Start/End: Original strand, 30149785 - 30150017
Alignment:
| Q |
25 |
atgattaatgggctttgtaaagagggcttgtttgacgaagcattgtttgtactgtctgaaatggaagacaatggttgcacgcctgatgttgtaacttacg |
124 |
Q |
| |
|
||||||||||||||||||||||| || || || || |||||||||| |||| || ||||| ||||||| |||||||| ||||||| ||||||||| | |
|
|
| T |
30149785 |
atgattaatgggctttgtaaagaagggtttttcgatgaagcattgtccttactctcaaaaatgaaagacaacggttgcactcctgatggtgtaacttatg |
30149884 |
T |
|
| Q |
125 |
aaactcttatctgtgctttgttcaaaaacgacatgaatgataaggccgtgaaactcctccgtgaaatgctttctagaggtctactgt-aagagtaaaact |
223 |
Q |
| |
|
||| | |||| |||||||||| ||| ||||| ||||||||||| |||||| | | ||||||||| || ||||||||||||| | |||||||||||| |
|
|
| T |
30149885 |
aaattattattcgtgctttgtttgaaagcgacagaaatgataaggcggtgaaatttattcgtgaaatgattgctagaggtctactctaaagagtaaaact |
30149984 |
T |
|
| Q |
224 |
a-gtgagttgttttctagttacaatctgttatt |
255 |
Q |
| |
|
| || || |||||||||| |||||| ||||||| |
|
|
| T |
30149985 |
aggtaagatgttttctaggtacaatttgttatt |
30150017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 25 - 215
Target Start/End: Complemental strand, 15714733 - 15714543
Alignment:
| Q |
25 |
atgattaatgggctttgtaaagagggcttgtttgacgaagcattgtttgtactgtctgaaatggaagacaatggttgcacgcctgatgttgtaacttacg |
124 |
Q |
| |
|
||||| ||||| |||||| ||||||||| ||||| |||||| || | ||||| ||||||||||||||||||||| || |||| ||||||||| | |
|
|
| T |
15714733 |
atgatcaatggtctttgtttagagggcttatttgatgaagcagtgaccctgctgtcaaaaatggaagacaatggttgcattccagatgctgtaacttatg |
15714634 |
T |
|
| Q |
125 |
aaactcttatctgtgctttgttcaaaaacgacatgaatgataaggccgtgaaactcctccgtgaaatgctttctagaggtctactgtaaga |
215 |
Q |
| |
|
|||| ||||| ||||| | || ||||| || |||||||||||| | |||||| || ||||||||| || || ||||||| |||||||| |
|
|
| T |
15714633 |
aaacaattatccgtgctctctttaaaaatgatgagaatgataaggcagagaaacttctgcgtgaaatgattgctcgaggtcttctgtaaga |
15714543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 134
Target Start/End: Original strand, 24942447 - 24942541
Alignment:
| Q |
40 |
tgtaaagagggcttgtttgacgaagcattgtttgtactgtctgaaatggaagacaatggttgcacgcctgatgttgtaacttacgaaactcttat |
134 |
Q |
| |
|
|||||| ||||||||||||| |||||||||| || |||| |||||||||||||||||||||| ||| || |||||||| ||| ||||||| |
|
|
| T |
24942447 |
tgtaaaaagggcttgtttgatgaagcattgtccttagtgtcaaaaatggaagacaatggttgcacccctaatcatgtaacttttgaagctcttat |
24942541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110 (Bit Score: 85; Significance: 4e-40; HSPs: 1)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 25 - 263
Target Start/End: Complemental strand, 43610 - 43370
Alignment:
| Q |
25 |
atgattaatgggctttgtaaagagggcttgtttgacgaagcattgtttgtactgtctgaaatggaagacaatggttgcacgcctgatgttgtaacttacg |
124 |
Q |
| |
|
||||||||||||||||||||||| || || ||||| |||||||||| |||| || ||||||||||||| |||||||| ||||||| ||||||||| | |
|
|
| T |
43610 |
atgattaatgggctttgtaaagaagggttttttgatgaagcattgtccttactctcaaaaatggaagacaacggttgcactcctgatggtgtaacttatg |
43511 |
T |
|
| Q |
125 |
aaactcttatctgtgctttgttcaaaaacgacatgaatgataaggccgtgaaactcctccgtgaaatgctttctagaggtctactgt-aagagtaaaact |
223 |
Q |
| |
|
||| | |||| |||||||||| ||||| ||| ||||||||||| |||||||| | ||||||||| || ||||||||||||| | |||||||||||| |
|
|
| T |
43510 |
aaattattattcgtgctttgtttgaaaacaacagaaatgataaggcggtgaaactgattcgtgaaatgattgctagaggtctactctaaagagtaaaact |
43411 |
T |
|
| Q |
224 |
a-gtgagttgttttctagttacaatctgttattctgaattt |
263 |
Q |
| |
|
| || || ||||||||| ||||||| ||||||| ||||||| |
|
|
| T |
43410 |
aggtaagatgttttctacttacaatttgttattatgaattt |
43370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 31 - 213
Target Start/End: Complemental strand, 44262328 - 44262146
Alignment:
| Q |
31 |
aatgggctttgtaaagagggcttgtttgacgaagcattgtttgtactgtctgaaatggaagacaatggttgcacgcctgatgttgtaacttacgaaactc |
130 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||| || |||| ||||||||||||| ||||||| ||| ||| ||||||||||||||||| |
|
|
| T |
44262328 |
aatgggctttgtaaagagggcttgtttgatgacgcattgtccttagtgtcaaaaatggaagacaacagttgcacccctaatgctgtaacttacgaaactc |
44262229 |
T |
|
| Q |
131 |
ttatctgtgctttgttcaaaaacgacatgaatgataaggccgtgaaactcctccgtgaaatgctttctagaggtctactgtaa |
213 |
Q |
| |
|
|||| |||||||||| |||| | || |||||||||| | |||||||| || ||||||||| || ||||||| || ||||| |
|
|
| T |
44262228 |
ttattcgtgctttgtttgaaaatggcaagaatgataagacggtgaaacttcttcgtgaaatgattgttagaggtatattgtaa |
44262146 |
T |
|
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Target: scaffold2177 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold2177
Description:
Target: scaffold2177; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 33 - 266
Target Start/End: Original strand, 171 - 404
Alignment:
| Q |
33 |
tgggctttgtaaagagggcttgtttgacgaagcattgtttgtactgtctgaaatggaagacaatggttgcacgcctgatgttgtaacttacgaaactctt |
132 |
Q |
| |
|
||||||||||| |||||| |||||||| |||||||||| || ||| |||||||||| ||||||| || | ||||||||||||||| |||||| || |
|
|
| T |
171 |
tgggctttgtagagagggtttgtttgatgaagcattgtactta-tgttgcaaatggaagaaaatggtttgactcatgatgttgtaacttatgaaactatt |
269 |
T |
|
| Q |
133 |
atctgtgctttgttcaaaaacgacatgaatgataaggccgtgaaactcctccgtgaaatgctttctagaggtctactgtaagagtaaaacta-gtgagtt |
231 |
Q |
| |
|
|| ||||||||||||||||| || |||||||||||| | ||| | || | ||||||| || |||||||||||| ||||||||||| || || |||| |
|
|
| T |
270 |
attcgtgctttgttcaaaaaccgcaagaatgataaggcagagaagattcttcatgaaatgattgatagaggtctactttaagagtaaaagtaggttagtt |
369 |
T |
|
| Q |
232 |
gttttctagttacaatctgttattctgaatttgaa |
266 |
Q |
| |
|
||| ||| ||||||| | ||||| |||||||||| |
|
|
| T |
370 |
atttcctaattacaattttttattttgaatttgaa |
404 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 83 - 216
Target Start/End: Complemental strand, 121163 - 121030
Alignment:
| Q |
83 |
aaatggaagacaatggttgcacgcctgatgttgtaacttacgaaactcttatctgtgctttgttcaaaaacgacatgaatgataaggccgtgaaactcct |
182 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| |||||| |||| | ||| | || ||||| || |||||||||||| | |||||| || |
|
|
| T |
121163 |
aaatggaagacaatggttgcactcctgatgttgtaacttatgaaactattatttacgctctttttaaaaatgatgagaatgataaggcagagaaacttct |
121064 |
T |
|
| Q |
183 |
ccgtgaaatgctttctagaggtctactgtaagag |
216 |
Q |
| |
|
||||||||| || |||||||||| |||||||| |
|
|
| T |
121063 |
acgtgaaatgattactagaggtctgttgtaagag |
121030 |
T |
|
Back To:
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Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 25 - 263
Target Start/End: Original strand, 9782797 - 9783044
Alignment:
| Q |
25 |
atgattaatgggctttgtaaagagggcttgtttgacgaagcattgtttgtactgtctgaaatggaagacaatggttgcacgcct-------gatgttgta |
117 |
Q |
| |
|
|||||||||||||| ||||||||||| || || || |||||||||| |||| || |||||||||||| |||||||| ||| |||| ||| |
|
|
| T |
9782797 |
atgattaatgggctctgtaaagagggttttttcgatgaagcattgtccttactctcaaaaatggaagacatcggttgcactcctcactcctgatgcagta |
9782896 |
T |
|
| Q |
118 |
acttacgaaactcttatctgtgctttgttcaaaaacgacatgaatgataaggccgtgaaactcctccgtgaaatgctttctagaggtctactgt-aagag |
216 |
Q |
| |
|
||||| ||||||| ||| |||||||||| ||| |||| ||||||||||| |||||||| || |||||||| || |||||||||| | | ||||| |
|
|
| T |
9782897 |
acttatgaaactcgtattcgtgctttgtttgaaagcgaccaaaatgataaggcggtgaaacttctttgtgaaatgattgctagaggtctgttctaaagag |
9782996 |
T |
|
| Q |
217 |
taaaacta-gtgagttgttttctagttacaatctgttattctgaattt |
263 |
Q |
| |
|
|||||||| ||||| || |||| |||||| | ||||||| ||||||| |
|
|
| T |
9782997 |
taaaactaggtgagatgctttccggttacagtttgttattgtgaattt |
9783044 |
T |
|
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Target: scaffold0177 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0177
Description:
Target: scaffold0177; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 83 - 134
Target Start/End: Original strand, 27669 - 27720
Alignment:
| Q |
83 |
aaatggaagacaatggttgcacgcctgatgttgtaacttacgaaactcttat |
134 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||||| |||||| |||| |
|
|
| T |
27669 |
aaatggaagataatggttgcactcctgatgttgtaacttatgaaactattat |
27720 |
T |
|
Back To:
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Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 17251571 - 17251615
Alignment:
| Q |
25 |
atgattaatgggctttgtaaagagggcttgtttgacgaagcattg |
69 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
17251571 |
atgatcaatgggctttgtaaagagagcttgtttgatgaagcattg |
17251615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 41316510 - 41316559
Alignment:
| Q |
17 |
ataatgtcatgattaatgggctttgtaaagagggcttgtttgacgaagca |
66 |
Q |
| |
|
||||| ||||||| ||||| ||||||||||| ||||||||||| |||||| |
|
|
| T |
41316510 |
ataatatcatgatcaatggactttgtaaagaaggcttgtttgatgaagca |
41316559 |
T |
|
Back To:
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Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 127
Target Start/End: Original strand, 24227078 - 24227180
Alignment:
| Q |
25 |
atgattaatgggctttgtaaagagggcttgtttgacgaagcattgtttgtactgtctgaaatggaagacaatggttgcacgcctgatgttgtaacttacg |
124 |
Q |
| |
|
||||||||||||||||||||||| || || || || |||||||||| |||| || ||||||||||||| ||||| ||||||| ||||||||| | |
|
|
| T |
24227078 |
atgattaatgggctttgtaaagaagggtttttggatgaagcattgtccttactctcaaaaatggaagacaacaagtgcactcctgatggtgtaacttatg |
24227177 |
T |
|
| Q |
125 |
aaa |
127 |
Q |
| |
|
||| |
|
|
| T |
24227178 |
aaa |
24227180 |
T |
|
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