View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6962_high_21 (Length: 300)
Name: NF6962_high_21
Description: NF6962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6962_high_21 |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 37090909 - 37090623
Alignment:
| Q |
1 |
gtttacgtgatccttgagtgatgtactatnnnnnnnnttcattactcaggaggaatcttacggctagtggaccaagacctaatccgcaaggatcttacca |
100 |
Q |
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| T |
37090909 |
gtttacgtgatccttgagtgatgtactataaaaaaaattcattactcaggaggaatcttacggctagtggaccaagacctaatccgcaaggatcttacca |
37090810 |
T |
|
| Q |
101 |
ttatggtttgataaacacaacgcgtacaataagacttgaaaactctgcaccagttatcaatggcaagcaaagatatgctgttaatagtgtttcgttcatc |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37090809 |
ttatggtttgataaacacgacgcgtacaataagacttgaaaactctgcaccagttatcaatggcaagcaaagatatgctgttaatagtgtttcgttcatc |
37090710 |
T |
|
| Q |
201 |
cctgccgatacaccacttaaactggcggattacttcaagatctcgggagttttcagccttggaagtattccggacaatcccacaggt |
287 |
Q |
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| T |
37090709 |
cctgccgatacaccacttaaactggcggattacttcaagatctcgggagttttcagccttggaagtattccggacaatcccacaggt |
37090623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 47 - 242
Target Start/End: Complemental strand, 17135675 - 17135480
Alignment:
| Q |
47 |
caggaggaatcttacggctagtggaccaagacctaatccgcaaggatcttaccattatggtttgataaacacaacgcgtacaataagacttgaaaactct |
146 |
Q |
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| T |
17135675 |
caggaggaatcttacagcaagtggaccaagaccaaatccacaaggatcctaccattatggaatgataaacacaacacgtacaattagacttcaaaattct |
17135576 |
T |
|
| Q |
147 |
gcaccagttatcaatggcaagcaaagatatgctgttaatagtgtttcgttcatccctgccgatacaccacttaaactggcggattacttcaagatc |
242 |
Q |
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| T |
17135575 |
gctccaattatcaaaggaaaacaaagatatgctgtcaatagtgtgtcatttatccctgctgatacaccactcaaactagctgattacttcaagatc |
17135480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 47 - 283
Target Start/End: Original strand, 17348196 - 17348432
Alignment:
| Q |
47 |
caggaggaatcttacggctagtggaccaagacctaatccgcaaggatcttaccattatggtttgataaacacaacgcgtacaataagacttgaaaactct |
146 |
Q |
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||||||||||||||| || |||||||||||||| ||||| |||||||| ||||||||||| ||||||||||||| |||||||| |||||| |||| ||| |
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| T |
17348196 |
caggaggaatcttacagcaagtggaccaagaccaaatccacaaggatcctaccattatggaatgataaacacaacacgtacaattagacttcaaaattct |
17348295 |
T |
|
| Q |
147 |
gcaccagttatcaatggcaagcaaagatatgctgttaatagtgtttcgttcatccctgccgatacaccacttaaactggcggattacttcaagatc--tc |
244 |
Q |
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| T |
17348296 |
gctccaattatcaatggaaaacaaagatatgctgtcaacggtgtgtcatttattcctgctgatacaccactcaaactagctgatcacttcaacatccaag |
17348395 |
T |
|
| Q |
245 |
gggagttttcagccttggaagtattccggacaatcccac |
283 |
Q |
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| T |
17348396 |
gggtgttttca--cttggaagtatcccggacaatcccac |
17348432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 117
Target Start/End: Complemental strand, 28939748 - 28939685
Alignment:
| Q |
54 |
aatcttacggctagtggaccaagacctaatccgcaaggatcttaccattatggtttgataaaca |
117 |
Q |
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| T |
28939748 |
aatcttactgcaagtggaccaaggcctaatccacaaggatcataccactatggtatgataaaca |
28939685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 8571062 - 8571006
Alignment:
| Q |
60 |
acggctagtggaccaagacctaatccgcaaggatcttaccattatggtttgataaac |
116 |
Q |
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||||| |||||||||||||| |||||||||||||| |||||||| || |||||||| |
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| T |
8571062 |
acggcaagtggaccaagaccaaatccgcaaggatcataccattacggcatgataaac |
8571006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 121
Target Start/End: Complemental strand, 53749675 - 53749611
Alignment:
| Q |
57 |
cttacggctagtggaccaagacctaatccgcaaggatcttaccattatggtttgataaacacaac |
121 |
Q |
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| T |
53749675 |
cttacagcaagtggaccaaggcctaacccacaaggatcctaccattacggtctcataaacacaac |
53749611 |
T |
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