View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6962_high_29 (Length: 270)
Name: NF6962_high_29
Description: NF6962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6962_high_29 |
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| [»] scaffold0288 (1 HSPs) |
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| [»] scaffold0090 (1 HSPs) |
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Alignment Details
Target: scaffold0288 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 259
Target Start/End: Original strand, 4542 - 4784
Alignment:
| Q |
19 |
ttaatactcaataagacattaatcactaatccaaaatctctcaaaagcaatcctacacactcaaggcctaaaaaa-ccttcactaaattttaaaa-attt |
116 |
Q |
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| T |
4542 |
ttaatactcaataagacattaatcactaatccaaaatctctcaaaagcaatcctacacactcaaggcctaaaaaaaccttcactaaattttaaaaaattt |
4641 |
T |
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| Q |
117 |
cggaggtgttacatacatcattgtcaatcatgatcttttcatgctctatagatgaattattaatgagttttaaatataatatatagaatagcttcagctc |
216 |
Q |
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| T |
4642 |
cggaggtgttacatacatcattgtcaatcatgatcttttcatgctctatagatgaattattaatgagttttaaatataatatatagaatagcttcagctc |
4741 |
T |
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| Q |
217 |
tgctatagcctaaggttcacatgaaatcccaaatattattctt |
259 |
Q |
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| T |
4742 |
tgctatagcctaaggttcacatgaaatcccaaatattattctt |
4784 |
T |
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Target: scaffold0090 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0090
Description:
Target: scaffold0090; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 16196 - 16254
Alignment:
| Q |
19 |
ttaatactcaataagacattaatcactaatccaaaatctctcaaaagcaatcctacacact |
79 |
Q |
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|||||| | ||||||||| ||||||| ||||||||||||||| ||| ||||||||||||| |
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| T |
16196 |
ttaatattaaataagacactaatcacaaatccaaaatctctc--aagaaatcctacacact |
16254 |
T |
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