View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6962_high_31 (Length: 253)
Name: NF6962_high_31
Description: NF6962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6962_high_31 |
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Alignment Details
Target: chr6 (Bit Score: 156; Significance: 6e-83; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 16 - 235
Target Start/End: Complemental strand, 16917622 - 16917403
Alignment:
| Q |
16 |
ggacatctatcaatacttagtttctgcaagtttttgtgttggtcaaagttgtctggtaactcggttaagataggaaacttactaatttctaattcctgaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||| | |||| |||||||||||||||| |||||| | ||||||||||||||||||||||| ||||| |
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| T |
16917622 |
ggacatctatcaatacttagtttctgcaagttttcgagttgctcaaagttgtctggtagtgaggttaacacaggaaacttactaatttctaatttctgaa |
16917523 |
T |
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| Q |
116 |
gagtaggcgtgtttcccaaccagtctggcaaagatctaagagaaggaaaatctgtcagagacaaattttgcagcgacggaatgtgttctaagccgttata |
215 |
Q |
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||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |
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| T |
16917522 |
gagatagcgtgtttcccaaccagtctggcaaagatctaagaaaaggaaaatctgtcagagacaaattttccagcgagggaatgtgttctaagccgttata |
16917423 |
T |
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| Q |
216 |
taacctgcgccttttatccg |
235 |
Q |
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|||||||||||||||||||| |
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| T |
16917422 |
taacctgcgccttttatccg |
16917403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 16 - 234
Target Start/End: Complemental strand, 16912436 - 16912218
Alignment:
| Q |
16 |
ggacatctatcaatacttagtttctgcaagtttttgtgttggtcaaagttgtctggtaactcggttaagataggaaacttactaatttctaattcctgaa |
115 |
Q |
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|||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
16912436 |
ggacatctatcaatacatagtttctgcaagttttcgagttggtcaaagttgtctggtaacgaggttaacttaggaaacttactaatttctaattcctgaa |
16912337 |
T |
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| Q |
116 |
gagtaggcgtgtttcccaaccagtctggcaaagatctaagagaaggaaaatctgtcagagacaaattttgcagcgacggaatgtgttctaagccgttata |
215 |
Q |
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||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||| ||||||||||||||| |
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| T |
16912336 |
gagatagcgtgtctcccaaccagtctggcaaagatctaagagaaggaaaatctctcagagacaaattttgcagcaagggaatgtcttctaagccgttata |
16912237 |
T |
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| Q |
216 |
taacctgcgccttttatcc |
234 |
Q |
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|| || ||||||| ||||| |
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| T |
16912236 |
tatcccgcgccttctatcc |
16912218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 184
Target Start/End: Original strand, 13375982 - 13376036
Alignment:
| Q |
130 |
cccaaccagtctggcaaagatctaagagaaggaaaatctgtcagagacaaatttt |
184 |
Q |
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||||||||||||||||| ||| | ||||||||||||| || ||||||||||||| |
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| T |
13375982 |
cccaaccagtctggcaaggatgttagagaaggaaaattagttagagacaaatttt |
13376036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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