View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6962_high_6 (Length: 505)

Name: NF6962_high_6
Description: NF6962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6962_high_6
NF6962_high_6
[»] chr5 (11 HSPs)
chr5 (1-498)||(40598215-40598712)
chr5 (1-285)||(40277089-40277373)
chr5 (131-483)||(40333000-40333355)
chr5 (131-483)||(40386278-40386633)
chr5 (1-481)||(40376035-40376518)
chr5 (345-483)||(40283161-40283299)
chr5 (64-194)||(40257607-40257737)
chr5 (170-294)||(40310350-40310474)
chr5 (362-486)||(40276846-40276970)
chr5 (390-483)||(40302840-40302930)
chr5 (391-457)||(40310190-40310256)


Alignment Details
Target: chr5 (Bit Score: 494; Significance: 0; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 1 - 498
Target Start/End: Original strand, 40598215 - 40598712
Alignment:
Q  1 aatttcttcttgcatagttctgatattcaggttttgcgtcaccgtggcaaataaaacctcatgaaaaatctttagatacttaactttctcacccattgct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  40598215 aatttcttcttgcatagttctgatattcaggttttgcgtcaccgtggcaaataaaacctcatgaaaaatctttagatgcttaactttctcacccattgct 40598314  T
Q  101 tttgccaacgctgtcttaccagagcccttgctaccatacaatccaatcatagagcaattatcatctcgcagtgcctctaaaatttgatctgaagtcttat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40598315 tttgccaacgctgtcttaccagagcccttgctaccatacaatccaatcatagagcaattatcatctcgcagtgcctctaaaatttgatctgaagtcttat 40598414  T
Q  201 ctctagacttaaaacacaaaatatttcctgaagagaagtgctctaaacttggaattggagttgaaaatggatcaaattcgcattttacattcaacgcagt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40598415 ctctagacttaaaacacaaaatatttcctgaagagaagtgctctaaacttggaattggagttgaaaatggatcaaattcgcattttacattcaacgcagt 40598514  T
Q  301 tatttttctcagcaatttcctaaattcattccattgtcgttttcttgattgtagtgtcagattttcaacctcttgcatgagtatatctgtttcttttagc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40598515 tatttttctcagcaatttcctaaattcattccattgtcgttttcttgattgtagtgtcagattttcaacctcttgcatgagtatatctgtttcttttagc 40598614  T
Q  401 cactcaaacacagcatcgttgaccttttcagttttgtgatcagttgcttcaacttttacgcgcacaagatctcgatttgaaatcagcctattcttttc 498  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40598615 cactcaaacacagcatcgttgaccttttcagttttgtgatcagttgcttcaacttttacgcgcacaagatctcgatttgaaatcagcctattcttttc 40598712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 40277373 - 40277089
Alignment:
Q  1 aatttcttcttgcatagttctgatattcaggttttgcgtcaccgtggcaaataaaacctcatgaaaaatctttagatacttaactttctcacccattgct 100  Q
    |||||| |||||||| | | |||||||  ||||||  |||||  || |||||||||  ||||||||||| |||| |||||| ||||||||||||||||||    
T  40277373 aatttcatcttgcattgctgtgatatttgggtttttggtcacactgacaaataaaatttcatgaaaaatatttaaatacttgactttctcacccattgct 40277274  T
Q  101 tttgccaacgctgtcttaccagagcccttgctaccatacaatccaatcatagagcaattatcatctcgcagtgcctctaaaatttgatctgaagtcttat 200  Q
    ||  |||| ||||| |||||||| ||||   |||||||||| ||||||||||| |||| ||||||    | ||||||||||| ||||||||||||||  |    
T  40277273 ttcaccaatgctgttttaccagatccctgcttaccatacaagccaatcatagaacaatcatcatccttgaatgcctctaaaagttgatctgaagtctcct 40277174  T
Q  201 ctctagacttaaaacacaaaatatttcctgaagagaagtgctctaaacttggaattggagttgaaaatggatcaaattcgcattt 285  Q
    |||||||||||||||||| |||||||||   ||| ||||||||||||||||||||| ||||||||||||| |||||||| |||||    
T  40277173 ctctagacttaaaacacataatatttccattagaaaagtgctctaaacttggaattcgagttgaaaatgggtcaaattcacattt 40277089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 131 - 483
Target Start/End: Complemental strand, 40333355 - 40333000
Alignment:
Q  131 ctaccatacaatccaatcatagagcaattatcatctcgcagtgcctctaaaatttgatctgaagtcttatctctagacttaaaacac---aaaatatttc 227  Q
    ||||| |||||||| |||||| | |||||||||||| |||||||||| |||| || |||||||| ||| ||  | ||||| ||||||   ||| ||||||    
T  40333355 ctaccgtacaatcctatcatacaacaattatcatcttgcagtgcctccaaaagttcatctgaagccttctccgtcgacttgaaacactcgaaattatttc 40333256  T
Q  228 ctgaagagaagtgctctaaacttggaattggagttgaaaatggatcaaattcgcattttacattcaacgcagttatttttctcagcaatttcctaaattc 327  Q
    || |||||||||| |||||||||||||||| |||||||||||||||||| |  |||||   ||| |  || || ||||||  | |||| ||  |||||||    
T  40333255 ctaaagagaagtgttctaaacttggaattgtagttgaaaatggatcaaaattacatttcttatttagtgctgtaattttttcctgcaacttattaaattc 40333156  T
Q  328 attccattgtcgttttcttgattgtagtgtcagattttcaacctcttgcatgagtatatctgtttcttttagccactcaaacacagcatcgttgaccttt 427  Q
    | |||||  | ||  | ||||||||| | | ||||| || |  | |||||||| ||| |||| |||||||||||||||||||||| ||||  | ||||||    
T  40333155 aatccatgatggtggttttgattgtaatttaagattctccattttttgcatgattatgtctgcttcttttagccactcaaacacaacatctctaaccttt 40333056  T
Q  428 tcagttttgtgatcagttgcttcaacttttacgcgcacaagatctcgatttgaaat 483  Q
    ||||||||  ||||| |||||||||||||| | |||||| |||| |||||||||||    
T  40333055 tcagttttacgatcaattgcttcaacttttgcacgcacacgatcacgatttgaaat 40333000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 131 - 483
Target Start/End: Complemental strand, 40386633 - 40386278
Alignment:
Q  131 ctaccatacaatccaatcatagagcaattatcatctcgcagtgcctctaaaatttgatctgaagtcttatctctagacttaaaacac---aaaatatttc 227  Q
    ||||| |||||||| |||||| | |||||||||||| |||||||||| |||| || |||||||| ||| ||  | ||||| ||||||   ||| ||||||    
T  40386633 ctaccgtacaatcctatcatacaacaattatcatcttgcagtgcctccaaaagttcatctgaagccttctccgtcgacttgaaacactcgaaattatttc 40386534  T
Q  228 ctgaagagaagtgctctaaacttggaattggagttgaaaatggatcaaattcgcattttacattcaacgcagttatttttctcagcaatttcctaaattc 327  Q
    || |||||||||| |||||||||||||||| |||||||||||| ||||| |  |||||   ||| |  || || ||||||  | |||||||  |||||||    
T  40386533 ctaaagagaagtgttctaaacttggaattgtagttgaaaatggctcaaaattacatttcttatttagtgctgtaattttttcctgcaatttattaaattc 40386434  T
Q  328 attccattgtcgttttcttgattgtagtgtcagattttcaacctcttgcatgagtatatctgtttcttttagccactcaaacacagcatcgttgaccttt 427  Q
    | |||||  | ||  | ||||||||| | | ||||| || |  | |||||||| ||| |||| |||||||||||||||||||||| ||||  | ||||||    
T  40386433 aatccatgatggtggttttgattgtaatttaagattctccattttttgcatgactatttctgcttcttttagccactcaaacacaacatctctaaccttt 40386334  T
Q  428 tcagttttgtgatcagttgcttcaacttttacgcgcacaagatctcgatttgaaat 483  Q
    ||||||||    ||| |||||||||||| | | |||||| |||| |||||||||||    
T  40386333 tcagttttactgtcaattgcttcaacttgtgcacgcacacgatcacgatttgaaat 40386278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 481
Target Start/End: Complemental strand, 40376518 - 40376035
Alignment:
Q  1 aatttcttcttgcatagttctgatattcaggttttgcgtcaccgtggcaaataaaacctcatgaaaaatctttagatacttaactttctcacccattgct 100  Q
    |||||| |||||||| | | |||||||  ||||||  |||||  || ||||||||| ||||| |||||| |||| | || | ||||||||||||||| ||    
T  40376518 aatttcatcttgcattgctgtgatatttgggtttttggtcacattgacaaataaaatctcatcaaaaatatttaaaaacatgactttctcacccattact 40376419  T
Q  101 tttgccaacgctgtcttaccagagcccttgctaccatacaatccaatcatagagcaattatcatctcgcagtgcctctaaaatttgatctgaagtcttat 200  Q
     |  |||| |  || ||||||||| |    ||||| |||||||| || |||   |||||||||||| ||||||| || |||| || |||||||| ||| |    
T  40376418 ctcaccaatgtagttttaccagagtcacgcctaccgtacaatcctattatacgacaattatcatcttgcagtgcttccaaaagttcatctgaagccttct 40376319  T
Q  201 ctctagacttaaaacac---aaaatatttcctgaagagaagtgctctaaacttggaattggagttgaaaatggatcaaattcgcattttacattcaacgc 297  Q
    || | ||||| ||||||   ||| |||||||| |||||||||| |||||||||||||||  | |||||||||||||||| |  |||||   ||| |  ||    
T  40376318 ctgtcgacttgaaacactcaaaattatttcctaaagagaagtgttctaaacttggaattataattgaaaatggatcaaaattacatttcttatttagtgc 40376219  T
Q  298 agttatttttctcagcaatttcctaaattcattccattgtcgttttcttgattgtagtgtcagattttcaacctcttgcatgagtatatctgtttctttt 397  Q
      | || |||  | |||| ||  |||||||| |||||  | ||  | ||||||||| ||  ||||| || || ||||| |||| ||| ||||||| ||||    
T  40376218 tttaatgttttcctgcaaattattaaattcaatccatgatggtggttttgattgtactgcaagattctccacttcttgtatgattatgtctgtttttttt 40376119  T
Q  398 agccactcaaacacagcatcgttgaccttttcagttttgtgatcagttgcttcaacttttacgcgcacaagatctcgatttgaa 481  Q
    ||||||||||||||| ||||  ||||||||||||||||  ||||| |||||||||||||| |  ||||| |||| |||||||||    
T  40376118 agccactcaaacacaacatctctgaccttttcagttttaggatcaattgcttcaacttttgcatgcacacgatcgcgatttgaa 40376035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 345 - 483
Target Start/End: Complemental strand, 40283299 - 40283161
Alignment:
Q  345 ttgattgtagtgtcagattttcaacctcttgcatgagtatatctgtttcttttagccactcaaacacagcatcgttgaccttttcagttttgtgatcagt 444  Q
    ||||||||| ||| ||||| || |  ||||| ||||  || ||||||||||||||||||||||||||| ||||  | ||||||||||||||   |||| |    
T  40283299 ttgattgtattgtaagattctccatttcttgtatgatcatgtctgtttcttttagccactcaaacacaacatctctaaccttttcagttttacaatcaat 40283200  T
Q  445 tgcttcaacttttacgcgcacaagatctcgatttgaaat 483  Q
    ||||||||||||| | ||| || |||| |||||||||||    
T  40283199 tgcttcaacttttgcacgcgcacgatcacgatttgaaat 40283161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 64 - 194
Target Start/End: Original strand, 40257607 - 40257737
Alignment:
Q  64 aaaaatctttagatacttaactttctcacccattgcttttgccaacgctgtcttaccagagcccttgctaccatacaatccaatcatagagcaattatca 163  Q
    ||||||||||| ||||||  |||||||||| | ||||||  |||||  ||| ||||||||||||||  | ||||| |||||||| ||| |||||||| |     
T  40257607 aaaaatctttaaatacttggctttctcaccaactgctttcaccaactttgttttaccagagcccttcttcccatataatccaattatatagcaattaccg 40257706  T
Q  164 tctcgcagtgcctctaaaatttgatctgaag 194  Q
    ||| |||||||||| |||| |||||| ||||    
T  40257707 tcttgcagtgcctccaaaagttgatccgaag 40257737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 170 - 294
Target Start/End: Complemental strand, 40310474 - 40310350
Alignment:
Q  170 agtgcctctaaaatttgatctgaagtcttatctctagacttaaaacacaaaatatttcctgaagagaagtgctctaaacttggaattggagttgaaaatg 269  Q
    |||||||| |||| |  |||||||||||  | | ||| || |||||| | || |||||| |||||||||||||||||||||||||||||| |  ||||||    
T  40310474 agtgcctccaaaagtctatctgaagtctcttttataggctcaaaacatacaaaatttccagaagagaagtgctctaaacttggaattggattgaaaaatg 40310375  T
Q  270 gatcaaattcgcattttacattcaa 294  Q
    | ||||| || ||||| | ||||||    
T  40310374 gctcaaactcacatttgatattcaa 40310350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 362 - 486
Target Start/End: Complemental strand, 40276970 - 40276846
Alignment:
Q  362 ttttcaacctcttgcatgagtatatctgtttcttttagccactcaaacacagcatcgttgaccttttcagttttgtgatcagttgcttcaacttttacgc 461  Q
    ||||| |||||||| |||||||| |||| ||||||||||||||  | |||| ||||| | ||||| ||| || | |||||| |||||| |  |||| | |    
T  40276970 ttttctacctcttgtatgagtatgtctgcttcttttagccacttgatcacatcatcgctcaccttatcaattctatgatcaattgctttatattttgcac 40276871  T
Q  462 gcacaagatctcgatttgaaatcag 486  Q
     |||| |||| ||||||||||||||    
T  40276870 tcacacgatcacgatttgaaatcag 40276846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 483
Target Start/End: Complemental strand, 40302930 - 40302840
Alignment:
Q  390 tttcttttagccactcaaacacagcatcgttgaccttttcagttttgtgatcagttgcttcaacttttacgcgcacaagatctcgatttgaaat 483  Q
    ||||||| ||||||||||| | || || |||||  |||||||||||   | ||||||||||| ||||| | |||||||||| ||||||||||||    
T  40302930 tttctttaagccactcaaaaatagtattgttgattttttcagtttt---agcagttgcttcagctttttcccgcacaagatatcgatttgaaat 40302840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 391 - 457
Target Start/End: Complemental strand, 40310256 - 40310190
Alignment:
Q  391 ttcttttagccactcaaacacagcatcgttgaccttttcagttttgtgatcagttgcttcaactttt 457  Q
    |||||||||||||||||  |||  ||| |||||||||| |||||| ||||| |||||||||| ||||    
T  40310256 ttcttttagccactcaagaacaatatcattgaccttttgagttttatgatcggttgcttcaattttt 40310190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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