View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6962_low_11 (Length: 467)

Name: NF6962_low_11
Description: NF6962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6962_low_11
NF6962_low_11
[»] scaffold0277 (4 HSPs)
scaffold0277 (200-449)||(5416-5665)
scaffold0277 (15-172)||(5693-5850)
scaffold0277 (202-298)||(14082-14178)
scaffold0277 (15-170)||(14209-14366)
[»] chr6 (12 HSPs)
chr6 (202-298)||(28780780-28780876)
chr6 (15-170)||(28780592-28780749)
chr6 (210-307)||(26801659-26801756)
chr6 (200-286)||(27699208-27699293)
chr6 (200-286)||(27719458-27719543)
chr6 (200-259)||(27725704-27725763)
chr6 (200-284)||(27532530-27532613)
chr6 (200-241)||(27594029-27594070)
chr6 (254-302)||(26720129-26720177)
chr6 (245-319)||(27669599-27669673)
chr6 (200-243)||(27228478-27228521)
chr6 (240-312)||(27228532-27228604)
[»] scaffold0349 (2 HSPs)
scaffold0349 (200-286)||(8880-8965)
scaffold0349 (200-259)||(4280-4339)
[»] chr4 (2 HSPs)
chr4 (245-318)||(18683760-18683832)
chr4 (253-319)||(18732093-18732157)


Alignment Details
Target: scaffold0277 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 200 - 449
Target Start/End: Complemental strand, 5665 - 5416
Alignment:
Q  200 aagacattgacattgctttaaagaaattacatggaagaaggatgagatggttgctttacagaagataggaaatgagaaggaagtttcccacttggtaaaa 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5665 aagacattgacattgctttaaagaaattacatggaagaaggatgagatggttgctttacagaagataggaaatgagaaggaagtttcccacttggtaaaa 5566  T
Q  300 gtgtaaaaccaaataaaagcttattgtggatattaagcnnnnnnnatgagttaactaaatagctagccagtttaacatggatattaagctgtacattgtt 399  Q
    ||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5565 gtgtaaaaccaaataaaagcttattgtggatattaagctttttttatgagttaactaaatagctagccagtttaacatggatattaagctgtacattgtt 5466  T
Q  400 atatatgtcagtacagttggatagctaattaactatttacagtaataatt 449  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5465 atatatgtcagtacagttggatagctaattaactatttacagtaataatt 5416  T

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Target: scaffold0277; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 15 - 172
Target Start/End: Complemental strand, 5850 - 5693
Alignment:
Q  15 atgaatacagggtaaaattggaagcaaagaaccgtgtccccccattaagatgatttcttgggatcaagcttaataagttatttattaattagtcagnnnn 114  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  5850 atgaatacagggtaaaataggaagcaaagaaccgtgtccccccattaagatgatttcttgggatcaagcttaataagttatttattaattagtcagtttt 5751  T
Q  115 nnnnnnnnnatagataaacaaagtgacatggtctgcttataggttacaaggtgacaaa 172  Q
             |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5750 tatttttttatagataaacaaagtgacatggtctgcttataggttacaaggtgacaaa 5693  T

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Target: scaffold0277; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 202 - 298
Target Start/End: Complemental strand, 14178 - 14082
Alignment:
Q  202 gacattgacattgctttaaagaaattacatggaagaaggatgagatggttgctttacagaagataggaaatgagaaggaagtttcccacttggtaaa 298  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14178 gacattcatattgctttaaagaaattacatggaagaaggatgagatggttgctttacagaagataggaaatgagaaggaagtttcccacttggtaaa 14082  T

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Target: scaffold0277; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 15 - 170
Target Start/End: Complemental strand, 14366 - 14209
Alignment:
Q  15 atgaatacagggtaaaattggaagcaaagaaccgtgtcccccc--attaagatgatttcttgggatcaagcttaataagttatttattaattagtcagnn 112  Q
    |||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||| ||||||||||||||||||       
T  14366 atgattacagggtaaaattggaagcaaagaaccgtgtccccccccattaagatgattttttgggatcaagcttaataaattatttattaattagtcattt 14267  T
Q  113 nnnnnnnnnnnatagataaacaaagtgacatggtctgcttataggttacaaggtgaca 170  Q
               ||||||||||||||||||||||||||| |||||||||||||||||||    
T  14266 tttatttttttatagataaacaaagtgacatggtctgcgtataggttacaaggtgaca 14209  T

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Target: chr6 (Bit Score: 89; Significance: 1e-42; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 202 - 298
Target Start/End: Original strand, 28780780 - 28780876
Alignment:
Q  202 gacattgacattgctttaaagaaattacatggaagaaggatgagatggttgctttacagaagataggaaatgagaaggaagtttcccacttggtaaa 298  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28780780 gacattcatattgctttaaagaaattacatggaagaaggatgagatggttgctttacagaagataggaaatgagaaggaagtttcccacttggtaaa 28780876  T

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Target: chr6; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 15 - 170
Target Start/End: Original strand, 28780592 - 28780749
Alignment:
Q  15 atgaatacagggtaaaattggaagcaaagaaccgtgtcccc--ccattaagatgatttcttgggatcaagcttaataagttatttattaattagtcagnn 112  Q
    |||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||       
T  28780592 atgattacagggtaaaattggaagcaaagaaccgtgtccccccccattaagatgattttttgggatcaagcttaataaattatttattaattagtcattt 28780691  T
Q  113 nnnnnnnnnnnatagataaacaaagtgacatggtctgcttataggttacaaggtgaca 170  Q
               ||||||||||||||||||||||||||| |||||||||||||||||||    
T  28780692 tttatttttttatagataaacaaagtgacatggtctgcgtataggttacaaggtgaca 28780749  T

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Target: chr6; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 210 - 307
Target Start/End: Original strand, 26801659 - 26801756
Alignment:
Q  210 cattgctttaaagaaattacatggaagaaggatgagatggttgctttacagaagataggaaatgagaaggaagtttcccacttggtaaaagtgtaaaa 307  Q
    ||||||||||  |||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||| ||||||||| |||||| ||||||||||||    
T  26801659 cattgctttactgaaattacatggaagaaggatgagatggttactttacataagataggaaatgggaaagaagtttccaacttggaaaaagtgtaaaa 26801756  T

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Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 200 - 286
Target Start/End: Complemental strand, 27699293 - 27699208
Alignment:
Q  200 aagacattgacattgctttaaagaaattacatggaagaaggatgagatggttgctttacagaagataggaaatgagaaggaagtttc 286  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||| | ||| |||||| ||||||||||||    
T  27699293 aagacattgacattgctctaaagaaattacatggaagaaggatgtgatggttactttacag-acatatgaaatgggaaggaagtttc 27699208  T

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Target: chr6; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 200 - 286
Target Start/End: Complemental strand, 27719543 - 27719458
Alignment:
Q  200 aagacattgacattgctttaaagaaattacatggaagaaggatgagatggttgctttacagaagataggaaatgagaaggaagtttc 286  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||| | ||| |||||| ||||||||||||    
T  27719543 aagacattgacattgctttaacgaaattacatggaagaaggatgtgatggttactttacag-acatatgaaatgggaaggaagtttc 27719458  T

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Target: chr6; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 200 - 259
Target Start/End: Complemental strand, 27725763 - 27725704
Alignment:
Q  200 aagacattgacattgctttaaagaaattacatggaagaaggatgagatggttgctttaca 259  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||    
T  27725763 aagacattgacattgctctaaagaaattacatggaagaaggatgtgatggttactttaca 27725704  T

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Target: chr6; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 200 - 284
Target Start/End: Complemental strand, 27532613 - 27532530
Alignment:
Q  200 aagacattgacattgctttaaagaaattacatggaagaaggatgagatggttgctttacagaagataggaaatgagaaggaagtt 284  Q
    |||||||| || ||||||||||||||||||||||||||||||||  |||||| |||||||||| ||| |||||| | ||||||||    
T  27532613 aagacattcacgttgctttaaagaaattacatggaagaaggatgttatggttactttacagaa-ataagaaatggggaggaagtt 27532530  T

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Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 200 - 241
Target Start/End: Complemental strand, 27594070 - 27594029
Alignment:
Q  200 aagacattgacattgctttaaagaaattacatggaagaagga 241  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  27594070 aagacattcacattgctttaaagaaattacatggaagaagga 27594029  T

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Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 254 - 302
Target Start/End: Original strand, 26720129 - 26720177
Alignment:
Q  254 tttacagaagataggaaatgagaaggaagtttcccacttggtaaaagtg 302  Q
    |||||||| ||||| ||||||||||||||||||| ||||||||||||||    
T  26720129 tttacagaggatagaaaatgagaaggaagtttccaacttggtaaaagtg 26720177  T

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Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 319
Target Start/End: Complemental strand, 27669673 - 27669599
Alignment:
Q  245 gatggttgctttacagaagataggaaatgagaaggaagtttcccacttggtaaaagtgtaaaaccaaataaaagc 319  Q
    |||||||  |||| ||||||||||||||  ||||||||||||  || ||||||||||||| | ||||||||||||    
T  27669673 gatggttattttagagaagataggaaataggaaggaagtttcttacatggtaaaagtgtagagccaaataaaagc 27669599  T

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Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 200 - 243
Target Start/End: Original strand, 27228478 - 27228521
Alignment:
Q  200 aagacattgacattgctttaaagaaattacatggaagaaggatg 243  Q
    |||||||| ||||| |||||||||||||||||||||| ||||||    
T  27228478 aagacattcacattactttaaagaaattacatggaaggaggatg 27228521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 312
Target Start/End: Original strand, 27228532 - 27228604
Alignment:
Q  240 gatgagatgg-ttgctttacagaagataggaaatgagaaggaagtttcccacttggtaaaagtgtaaaaccaaa 312  Q
    |||||||||| || |||||||||| |||  ||||| ||||||||||||| |||||||| ||||||| |||||||    
T  27228532 gatgagatgggttactttacagaa-atacaaaatgggaaggaagtttcctacttggtataagtgtagaaccaaa 27228604  T

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Target: scaffold0349 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 200 - 286
Target Start/End: Complemental strand, 8965 - 8880
Alignment:
Q  200 aagacattgacattgctttaaagaaattacatggaagaaggatgagatggttgctttacagaagataggaaatgagaaggaagtttc 286  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||| | ||| |||||| ||||||||||||    
T  8965 aagacattgacattgctttaacgaaattacatggaagaaggatgtgatggttactttacag-acatatgaaatgggaaggaagtttc 8880  T

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Target: scaffold0349; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 200 - 259
Target Start/End: Complemental strand, 4339 - 4280
Alignment:
Q  200 aagacattgacattgctttaaagaaattacatggaagaaggatgagatggttgctttaca 259  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||    
T  4339 aagacattgacattgctctaaagaaattacatggaagaaggatgtgatggttactttaca 4280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 245 - 318
Target Start/End: Complemental strand, 18683832 - 18683760
Alignment:
Q  245 gatggttgctttacagaagataggaaatgagaaggaagtttcccacttggtaaaagtgtaaaaccaaataaaag 318  Q
    ||||||| |||| ||||| ||| |||||| |||||||||||||||||||||||||||||| ||||| |||||||    
T  18683832 gatggttactttgcagaa-atacgaaatgggaaggaagtttcccacttggtaaaagtgtagaaccatataaaag 18683760  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 319
Target Start/End: Complemental strand, 18732157 - 18732093
Alignment:
Q  253 ctttacagaagataggaaatgagaaggaagtttcccacttggtaaaagtgtaaaaccaaataaaagc 319  Q
    |||||||||||| | ||||||  |||||| |||||||||||||||| ||||| ||||||||||||||    
T  18732157 ctttacagaaga-acgaaatggcaaggaaatttcccacttggtaaa-gtgtagaaccaaataaaagc 18732093  T

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