View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6962_low_13 (Length: 458)
Name: NF6962_low_13
Description: NF6962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6962_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 19 - 454
Target Start/End: Complemental strand, 28411533 - 28411087
Alignment:
| Q |
19 |
gagttcataatgtagaaggagaaaagaaccatgatgcttacttatcttatgannnnnnngatgcaaacctaactcctcttggatggcagcaggtagttgc |
118 |
Q |
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| T |
28411533 |
gagttcataatgtagaaggagaaaagaaccatgatgcttacttatcttatgatttttttgatgcaaacctaactcctcttggatggcagcaggtagttgc |
28411434 |
T |
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| Q |
119 |
ttttccaacttttttgaatgtcatgctgtcaa-----------tggnnnnnnnattatgcggaattcctctctgaagtgatcacgatgatcaaatgatat |
207 |
Q |
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| T |
28411433 |
ttttccaacttttttgaatgtcatgctgtcaagtatttgtcaatggtttttgtattatgcggaattcctctctgaagtgatcacgatgatcaaatgatat |
28411334 |
T |
|
| Q |
208 |
tgttgtagagattggtattagtattttagtattctgtcctggtattccataatccgatttctcgtgaagtaattgttgataacaatcttgttctgcatac |
307 |
Q |
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| T |
28411333 |
tgttgtagagattggtattagtattttagtattctgtcctggtattccataatccgatttctcgtgaagtaattgtcgataacaatcttgttctgcatac |
28411234 |
T |
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| Q |
308 |
atctatctcttgctagtatttcctgctcaatgtagctctctcatatatgtcatcgtctgacatcgatacatgcggttatactcaaatatttccacttttt |
407 |
Q |
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| T |
28411233 |
atctatctcttgctagtatttcctgctcaatgtagcactctcatatatgtcatcgtctgacatcgatacatgcggttatactcaaatatttccacttttt |
28411134 |
T |
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| Q |
408 |
caaattattaccagcaaccacatatcagtgtcatgtctgatgtccat |
454 |
Q |
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| T |
28411133 |
caaattattaccagcaaccacatatcagtgtcatgtctgatgtccat |
28411087 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 52013225 - 52013273
Alignment:
| Q |
22 |
ttcataatgtagaaggagaaaagaaccatgatgcttacttatcttatga |
70 |
Q |
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|||| ||||| |||||||| ||||||| |||||| |||||||||||||| |
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| T |
52013225 |
ttcacaatgttgaaggagacaagaaccctgatgcgtacttatcttatga |
52013273 |
T |
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