View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6962_low_14 (Length: 449)
Name: NF6962_low_14
Description: NF6962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6962_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 70 - 424
Target Start/End: Complemental strand, 19640232 - 19639879
Alignment:
| Q |
70 |
ctatcttacatcacgcttcatattacaagtataatatcttagtttagtcactttctttttgcaatgctgataatgcttatttgaattctacccatgaaat |
169 |
Q |
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| T |
19640232 |
ctatcttacatcatgcttcatattacagctataatatctcagtttagtcact--ctttttgcaatgcggataatgtttatttgaattctacccatgaaat |
19640135 |
T |
|
| Q |
170 |
gtagttttaaggttctagtaattcaaatgctttaggaactacggccaactattgagtagctacctgactagtttcacataatttacgtcacnnnnnnnna |
269 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||| ||||| | |
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| T |
19640134 |
gtagctttaaggttctagtaattcaaatgctttaggaactacggccaaatgttgactagctacctgactagtttcacataatttaagtcacttttcttta |
19640035 |
T |
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| Q |
270 |
tggtttgttatttctcttctcccaacactgggggtgttggtttctctaatattgaaattcacttctgaaataaaaagcagaacc-gtttttcgaaatttg |
368 |
Q |
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| T |
19640034 |
tggtttgttgtttgtgttctcccgacactgggggtgttggtttctctaatattgaaattcacttctgaaataaaaagcagaaccattttttcgaaatttg |
19639935 |
T |
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| Q |
369 |
ttttgataattattatttaaagtgtcataccaaaggaccctataaaatcatgttgc |
424 |
Q |
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| T |
19639934 |
ttttgataattattatttaaagtaccataccaaaggaccctataaaatcatgttgc |
19639879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 70 - 425
Target Start/End: Complemental strand, 15687798 - 15687444
Alignment:
| Q |
70 |
ctatcttacatcacgcttcatattacaagtataatatcttagtttagtcactttctttttgcaatgctgataatgcttatttgaattctacccatgaaat |
169 |
Q |
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| T |
15687798 |
ctatcttacatcatgcttcatattacagctataatatctcagtctagtcacttt--ttttgcaatgctgataatgtttatttgaattctacccatgaaat |
15687701 |
T |
|
| Q |
170 |
gtagttttaaggttctagtaattcaaatgctttaggaactacggccaactattgagtagctacctgactagtttcacataatttacgtcacnnnnnnnna |
269 |
Q |
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||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||| ||||||||||||||||| ||||||||| ||||| | |
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| T |
15687700 |
gtagttttaaggttctagtaattcaaatgctttcggaactatggccaaatattgagtggctacctgactagtttctcataatttaagtcacttttcttta |
15687601 |
T |
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| Q |
270 |
tggtttgttatttctcttctcccaacactgggggtgttggtttctctaatattgaaattcacttctgaaataaaaagcagaaccgtttttcgaaatttgt |
369 |
Q |
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| T |
15687600 |
tggtttgttatttgtgttctcccaacactgggggtgttggttgctctaatattgaaattcacttctgaaataaaaagcagaaccgtttttcgaaattttc |
15687501 |
T |
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| Q |
370 |
tttgataatt-attatttaaagtgtcataccaaaggaccctataaaatcatgttgct |
425 |
Q |
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||| |||||| |||||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
15687500 |
ttttataattaattatttaaagtgtcataccaaaggatcctgtaaaatcatgttgct |
15687444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 635358 - 635412
Alignment:
| Q |
17 |
attgtttacttctaagtatcttttaatgggttgatctattgatttctttggtcct |
71 |
Q |
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| T |
635358 |
attgtttacttctacgtaacttttgatgggtagaactagtgatttctttggtcct |
635412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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