View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6962_low_17 (Length: 385)
Name: NF6962_low_17
Description: NF6962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6962_low_17 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 14)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 6 - 381
Target Start/End: Original strand, 27486147 - 27486524
Alignment:
| Q |
6 |
gtcgaagaatatttaaacggaaacccatgtttggtgattgtttgagggagaagaacaaactcaacaaagtaaatatctcaaaaaatttagaagaatgtaa |
105 |
Q |
| |
|
|||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27486147 |
gtcgaataacatttaaacggaaacccatttttggtgattgtttgagggagaagaacaaactcaacaaagtaaatatctcaaaaaatttagaagaatgtaa |
27486246 |
T |
|
| Q |
106 |
ctaatacttgaggatgtcaacgacttgtgttgtgtttgaagccaatttgtaagtatatttatagttactgagattctttgcaaacctaattccaagctaa |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27486247 |
ctaatacttgaggatgtcaacgacttgtgttgtgtttgaagccaatttgtaagtatatttatagttactgagattctttgcaaacctaattccaagctaa |
27486346 |
T |
|
| Q |
206 |
attattgtttgaaagagttaaaggataagatgatatagcatgtgg-gttgtctaaagattgta-caccaccctttcaaattcaacctcatatttgttcat |
303 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||||||| |||||||||| ||| || |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
27486347 |
attatttcttgaaagagttaaaggataagatgatataccatgtggtgttgtctaaacattataccaccaccctttcaaattcaacctcatattttttcat |
27486446 |
T |
|
| Q |
304 |
gcattaactatcacttcataattttgtaaacatgtttcagacatgtcttcttcattatcaaagtgctgatgtccatct |
381 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||| |||||||||||| |
|
|
| T |
27486447 |
ccattaactatcacttcataattgtgtaaacatgtttcagacatgttttcttcattattaaagtgttgatgtccatct |
27486524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 6 - 378
Target Start/End: Original strand, 27479087 - 27479461
Alignment:
| Q |
6 |
gtcgaagaatatttaaacggaaacccatgtttggtgattgtttgagggagaagaacaaactcaacaaagtaaatatctcaaaaaatttagaagaatgtaa |
105 |
Q |
| |
|
|||||| || |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27479087 |
gtcgaataacatttaaacggaaacccatttttggtgattgtttgagagagaagaacaaactcaacaaagtaaatatctcaaaaaatttagaagaatgtaa |
27479186 |
T |
|
| Q |
106 |
ctaatacttgaggatgtcaacgacttgtgttgtgtttgaagccaatttgtaagtatatttatagttactgagattctttgcaaacctaattccaagctaa |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27479187 |
ctaatacttgaggatgtcaacgacttgtgttgtgtttgaagccaatttgtaagtatatttatagttactgagattctttgcaaacctaattccaagctaa |
27479286 |
T |
|
| Q |
206 |
attattgtttgaaagagttaaaggataagatgatatagcatgtgg-gttgtctaaagattgta-caccaccctttcaaattcaacctcatatttgttcat |
303 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||||||| |||||||||| |||||| |||||||||||||| ||||||||||||||| |||| |
|
|
| T |
27479287 |
attatttcttgaaagagttaaaggataagatgatataccatgtggtgttgtctaaacattgtaccaccaccctttcaagttcaacctcatattttatcat |
27479386 |
T |
|
| Q |
304 |
gcattaactatcacttcataattttgtaaacatgtttcagacatgtcttcttcattatcaaagtgctgatgtcca |
378 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
27479387 |
ctattaactatcacttcataattgtgtaaacatgtttcagacatgttttcttcattatcatggtgctgatgtcca |
27479461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 5 - 378
Target Start/End: Complemental strand, 27506635 - 27506263
Alignment:
| Q |
5 |
tgtcgaagaatatttaaacggaaacccatgtttggtgattgtttgagggagaagaacaaactcaacaaagtaaatatctcaaaaaatttagaagaatgta |
104 |
Q |
| |
|
||||||| || |||||| ||||||||||| |||||||||||||||| || ||||||||||||||| |||| ||| ||| |||||| ||||||||||| || |
|
|
| T |
27506635 |
tgtcgaataacatttaagcggaaacccatttttggtgattgtttgaaggtgaagaacaaactcaagaaagcaaagatcacaaaaa-tttagaagaatcta |
27506537 |
T |
|
| Q |
105 |
actaatacttgaggatgtcaacgacttgtgttgtgtttgaagccaatttgtaagtatatttatagttactgagattctttgcaaacctaattccaagcta |
204 |
Q |
| |
|
|||||||||| ||||| ||| |||||||||||||||||| ||| ||||||||||||||||||||||||| | |||||||||||||||||||||||| || |
|
|
| T |
27506536 |
actaatactttaggataccaatgacttgtgttgtgtttgatgcctatttgtaagtatatttatagttactaatattctttgcaaacctaattccaagata |
27506437 |
T |
|
| Q |
205 |
aattattgtttgaaagagttaaaggataagatgatatagcatgtgggttgtctaaagattgtacaccaccctttcaaattcaacctcatatttgttcatg |
304 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27506436 |
aattattgtttgaaagaattaaaggataagatgatatagcatgtgggttgtctaaagattgtacaccaccctttcaaattcaacctcatatttgttcatg |
27506337 |
T |
|
| Q |
305 |
cattaactatcacttcataattttgtaaacatgtttcagacatgtcttcttcattatcaaagtgctgatgtcca |
378 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
27506336 |
cattaactatcacttcataattttgtaaacatgtttcagacatgttttcttcattatcaaagtgctgatgtcca |
27506263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 152 - 349
Target Start/End: Complemental strand, 27501137 - 27500939
Alignment:
| Q |
152 |
ttgtaagtatatttatagttactgagattctttgcaaacctaattccaagctaaattattgtttgaaagagttaaaggataagatgatatagcatgtgg- |
250 |
Q |
| |
|
|||| |||||||||||||||| |||| ||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27501137 |
ttgttagtatatttatagttattgaggttctttggaaacccaattacaagctaaattattgtttgaaagagttaaaggataagatgatatagcatgtggt |
27501038 |
T |
|
| Q |
251 |
gttgtctaaagattgtacaccaccctttcaaattcaacctcatatttgttcatgcattaactatcacttcataattttgtaaacatgtttcagacatgt |
349 |
Q |
| |
|
||||| | |||||||||| |||||||||||| | ||||| | |||||||||||||||||| | ||||||||||| ||||| |||||||||||||||| |
|
|
| T |
27501037 |
gttgttttaagattgtaccccaccctttcaactgcaaccacttatttgttcatgcattaagaagtacttcataattgtgtaagcatgtttcagacatgt |
27500939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 108 - 229
Target Start/End: Complemental strand, 27527001 - 27526881
Alignment:
| Q |
108 |
aatacttgaggatgtcaacgacttgtgttgtgtttg-aagccaatttgtaagtatatttatagttactgagattctttgcaaacctaattccaagctaaa |
206 |
Q |
| |
|
||||||||| |||| ||| |||||||||| | |||| ||| || |||||||||||||||||||||||||| |||| || |||||||||||||||||||| |
|
|
| T |
27527001 |
aatacttgacgatgccaatgacttgtgttatttttggaag--aaattgtaagtatatttatagttactgaggttctctggaaacctaattccaagctaaa |
27526904 |
T |
|
| Q |
207 |
ttattgtttgaaagagttaaagg |
229 |
Q |
| |
|
||||||||| ||||||||||||| |
|
|
| T |
27526903 |
ttattgtttaaaagagttaaagg |
27526881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 316 - 361
Target Start/End: Original strand, 27468898 - 27468943
Alignment:
| Q |
316 |
acttcataattttgtaaacatgtttcagacatgtcttcttcattat |
361 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
27468898 |
acttcataattttgtaaacatgcttcagacatgttttcttcattat |
27468943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 285 - 378
Target Start/End: Complemental strand, 27489721 - 27489628
Alignment:
| Q |
285 |
caacctcatatttgttcatgcattaactatcacttcataattttgtaaacatgtttcagacatgtcttcttcattatcaaagtgctgatgtcca |
378 |
Q |
| |
|
||||||||||||| |||||||||||| | |||| |||||||||||||||| || |||||||| ||||||||||| ||| || |||||||| |
|
|
| T |
27489721 |
caacctcatatttattcatgcattaattggtactttgtaattttgtaaacatgctttagacatgttttcttcattatgaaaatgtcgatgtcca |
27489628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 317 - 378
Target Start/End: Complemental strand, 27524102 - 27524041
Alignment:
| Q |
317 |
cttcataattttgtaaacatgtttcagacatgtcttcttcattatcaaagtgctgatgtcca |
378 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||| ||||||||||| | | |||||||||||| |
|
|
| T |
27524102 |
cttcataatttcgtaaacatgcttcagacatgttttcttcattatgataatgctgatgtcca |
27524041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 156 - 219
Target Start/End: Original strand, 27473128 - 27473191
Alignment:
| Q |
156 |
aagtatatttatagttactgagattctttgcaaacctaattccaagctaaattattgtttgaaa |
219 |
Q |
| |
|
||||||||||||||||| |||| |||| || ||| | ||||||||||||||||||| ||||||| |
|
|
| T |
27473128 |
aagtatatttatagttattgaggttctctgaaaatccaattccaagctaaattattatttgaaa |
27473191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 316 - 378
Target Start/End: Complemental strand, 27514472 - 27514410
Alignment:
| Q |
316 |
acttcataattttgtaaacatgtttcagacatgtcttcttcattatcaaagtgctgatgtcca |
378 |
Q |
| |
|
|||||||||||||||||||||| || |||||||| |||| |||||| | | |||||||||||| |
|
|
| T |
27514472 |
acttcataattttgtaaacatgctttagacatgttttctgcattatgataatgctgatgtcca |
27514410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 321 - 378
Target Start/End: Complemental strand, 27503499 - 27503442
Alignment:
| Q |
321 |
ataattttgtaaacatgtttcagacatgtcttcttcattatcaaagtgctgatgtcca |
378 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||| | | || ||||||||| |
|
|
| T |
27503499 |
ataattttgtaaacatgcttcagacatgttttcttcattatgataatgttgatgtcca |
27503442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 319 - 378
Target Start/End: Original strand, 27556962 - 27557021
Alignment:
| Q |
319 |
tcataattttgtaaacatgtttcagacatgtcttcttcattatcaaagtgctgatgtcca |
378 |
Q |
| |
|
||||||||||||||||||| || |||||||| ||||||||||| | |||| |||| |||| |
|
|
| T |
27556962 |
tcataattttgtaaacatgctttagacatgttttcttcattatgatagtgttgatttcca |
27557021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 378
Target Start/End: Complemental strand, 27508486 - 27508425
Alignment:
| Q |
317 |
cttcataattttgtaaacatgtttcagacatgtcttcttcattatcaaagtgctgatgtcca |
378 |
Q |
| |
|
|||||||||||| |||||||| | |||||||| ||||||||||| | | |||||||||||| |
|
|
| T |
27508486 |
cttcataattttataaacatgctgaagacatgttttcttcattatgacaatgctgatgtcca |
27508425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 321 - 361
Target Start/End: Original strand, 27476133 - 27476173
Alignment:
| Q |
321 |
ataattttgtaaacatgtttcagacatgtcttcttcattat |
361 |
Q |
| |
|
|||||||||||| |||| ||||||||||| ||||||||||| |
|
|
| T |
27476133 |
ataattttgtaagcatgcttcagacatgttttcttcattat |
27476173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University