View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6962_low_18 (Length: 375)
Name: NF6962_low_18
Description: NF6962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6962_low_18 |
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| [»] scaffold0102 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 4696763 - 4696990
Alignment:
| Q |
1 |
aaaaatgaagtgaaaaagattattgattagttcaactgaattctgttacaatgagggtatatgtagaagttggttatgacagctatgtctaactaacttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4696763 |
aaaaatgaagtgaaaaagattattgattagttcaactgaattctgttacaatgagggtatatgtagaagttggttatgacagctatgtctaactaacttc |
4696862 |
T |
|
| Q |
101 |
tatctatctaactgtaaaagaaatacaaatgaaattacatgtaaatgaggtaatttccacattaagcaaactaagaattctagctgctatttacgtgcta |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4696863 |
tatctatctaaatgtaaaagaaatacaaatgaaattacatgtaaataaggtaatttccacattaagcaaactaagaattctagctgctatttacgtgcta |
4696962 |
T |
|
| Q |
201 |
tcttatttctcaacatcttcttctaata |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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| T |
4696963 |
tcttatttctcaacatcttcttctaata |
4696990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 4674506 - 4674659
Alignment:
| Q |
1 |
aaaaatgaagtgaaaaagattattgattagttcaactgaattctgttacaatgagggtatatgtagaagttggttatgacagctatgtctaactaacttc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4674506 |
aaaaatgaagtgaaaaagattattgattagttcaactgaattctgttacaatga------atgtagaagttggttatgacagctatgtctaactaacttc |
4674599 |
T |
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| Q |
101 |
tatctatctaactgtaaaagaaatacaaatgaaattacatgtaaatgaggtaatttccac |
160 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
4674600 |
tatctatctaaatgtaaaagaaatacaaatgaaattacatgtaaataaggtaatttccac |
4674659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 228 - 311
Target Start/End: Complemental strand, 36320110 - 36320027
Alignment:
| Q |
228 |
agctgttaaataaaacaaacagcaatgtggtgaagcacttgataatgtcgttcactctataaggaagacattttaattgtatgg |
311 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
36320110 |
agctggtaaataaaacaaacagcaatgtggtgaagcacttgataatgtcattcactctataaggaagacattttaattgtatgg |
36320027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 23415096 - 23415323
Alignment:
| Q |
1 |
aaaaatgaagtgaaaaagattattgattagttcaactgaattctgttacaatgagggtatatgtagaagttggttatgacagctatgtctaactaacttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
23415096 |
aaaaatgaagtgaaaaagattattgattagttcaactgaattctgttacaatgagggtatatatagaagttggttatgacagctatgtctacctaacttc |
23415195 |
T |
|
| Q |
101 |
tatctatctaactgtaaaagaaatacaaatgaaattacatgtaaatgaggtaatttccacattaagcaaactaagaattctagctgctatttacgtgcta |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23415196 |
tatctatctaaatgtaaaagaaatacaaatgaaattacatgtaaatgaggtaatttccacattaagcaaactaagaattctagctgctatttacgtgcta |
23415295 |
T |
|
| Q |
201 |
tcttatttctcaacatcttcttctaata |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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| T |
23415296 |
tcttatttctcaacatcttcttctaata |
23415323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 23419885 - 23420112
Alignment:
| Q |
1 |
aaaaatgaagtgaaaaagattattgattagttcaactgaattctgttacaatgagggtatatgtagaagttggttatgacagctatgtctaactaacttc |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
23419885 |
aaaaatgaagtgaaaaagattattgattagttcaactgaattctgttacaatgagggtatatatagaagttggttatgacagctatgtctacctaacttc |
23419984 |
T |
|
| Q |
101 |
tatctatctaactgtaaaagaaatacaaatgaaattacatgtaaatgaggtaatttccacattaagcaaactaagaattctagctgctatttacgtgcta |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23419985 |
tatctatctaaatgtaaaagaaatacaaatgaaattacatgtaaatgaggtaatttccacattaagcaaactaagaattctagctgctatttacgtgcta |
23420084 |
T |
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| Q |
201 |
tcttatttctcaacatcttcttctaata |
228 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
23420085 |
tcttatttctcaacatcttcttctaata |
23420112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0102 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: scaffold0102
Description:
Target: scaffold0102; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 6930 - 6703
Alignment:
| Q |
1 |
aaaaatgaagtgaaaaagattattgattagttcaactgaattctgttacaatgagggtatatgtagaagttggttatgacagctatgtctaactaacttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
6930 |
aaaaatgaagtgaaaaagattattgattgattcaactgaattctgttacaatgagggtatatatagaagttggttatgacagctatgtctaactaacttc |
6831 |
T |
|
| Q |
101 |
tatctatctaactgtaaaagaaatacaaatgaaattacatgtaaatgaggtaatttccacattaagcaaactaagaattctagctgctatttacgtgcta |
200 |
Q |
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| ||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
6830 |
tgtctatctaaatgtaaatgaaatacaaatgaaattacatgtaaatgaggtaacttccacattcagcaaactaagaattctagctgctatttacgtgcta |
6731 |
T |
|
| Q |
201 |
tcttatttctcaacatcttcttctaata |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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|
| T |
6730 |
tcttatttctcaacatcttcttctaata |
6703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0102; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 165 - 228
Target Start/End: Complemental strand, 2413 - 2350
Alignment:
| Q |
165 |
agcaaactaagaattctagctgctatttacgtgctatcttatttctcaacatcttcttctaata |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2413 |
agcaaactaagaattctagctgctatttacgtgctatcttatttctcaacatcttcttctaata |
2350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 39 - 204
Target Start/End: Complemental strand, 14325978 - 14325812
Alignment:
| Q |
39 |
aattctgttacaatgagggtatatgtagaagttggttatgacagctatgtctaactaacttctatctatctaactgtaaaagaaatacaaatgaaattac |
138 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||||| ||| ||| || ||||||||||||||||| | || || || |||| ||||||||||||| |
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| T |
14325978 |
aattcttttacaatgagggtatatatagaagttggttataacaactaagtataactaacttctatctaaccaaatgaaactaaaatgcaaatgaaattac |
14325879 |
T |
|
| Q |
139 |
atgt-aaatgaggtaatttccacattaagcaaactaagaattctagctgctatttacgtgctatctt |
204 |
Q |
| |
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|||| ||||||| ||| || ||| ||||||||||||||| |||| ||||||||||||| |||||| |
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|
| T |
14325878 |
atgtaaaatgagataacttgcacgctaagcaaactaagaaccctagatgctatttacgtgttatctt |
14325812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 39 - 204
Target Start/End: Complemental strand, 14418988 - 14418822
Alignment:
| Q |
39 |
aattctgttacaatgagggtatatgtagaagttggttatgacagctatgtctaactaacttctatctatctaactgtaaaagaaatacaaatgaaattac |
138 |
Q |
| |
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|||||| ||||||||||||||||| |||||||||||||| ||| ||| || ||||||||||||||||| | || || || |||| ||||||||||||| |
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| T |
14418988 |
aattcttttacaatgagggtatatatagaagttggttataacaactaagtataactaacttctatctaaccaaatgaaactaaaatgcaaatgaaattac |
14418889 |
T |
|
| Q |
139 |
atgt-aaatgaggtaatttccacattaagcaaactaagaattctagctgctatttacgtgctatctt |
204 |
Q |
| |
|
|||| ||||||| ||| || ||| ||||||||||||||| |||| ||||||||||||| |||||| |
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| T |
14418888 |
atgtaaaatgagataacttgcacgctaagcaaactaagaaccctagatgctatttacgtgttatctt |
14418822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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