View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6962_low_19 (Length: 364)
Name: NF6962_low_19
Description: NF6962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6962_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 10600056 - 10600434
Alignment:
| Q |
1 |
tccctcactttttggtgcatcaattgtattcacagtgtctttgcttttcccccataccacagtgtaaagtccacacacaatgataatagctccaattatg |
100 |
Q |
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| T |
10600056 |
tccctcactttttggtgcatcaattgtattcacactgtctttgcttttcccccataccacagtgtaaagtccacacacaatgataatagctccaattata |
10600155 |
T |
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| Q |
101 |
ctacaaatcacatnnnnnnnnnggttcaattagcaacacatttg----------------tttctatatgctactttaagtttttaaagaattgacatta |
184 |
Q |
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| T |
10600156 |
ctacaaatcacataaaaaaaaaagttcaattagcaacatatttgagttttggctttcttgtttttatatgctactttaaatttttaaagaattgacatta |
10600255 |
T |
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| Q |
185 |
catgttttctttatacacctcattctctttaatctaataaaaatgagacacatgaagaaaaattgtatctttatttattgtaagtgtcaatagtatgttt |
284 |
Q |
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| T |
10600256 |
catgttttctttatacacctcattctctttaatctaataaaaatgagacacatgaagaaaaattgtatctttatttattgtaagtgtcaatagtatgttt |
10600355 |
T |
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| Q |
285 |
attatttttgtgtcactttttgattggaccaacataaaagatataataagttgagagatgcatgagtataatctagcca |
363 |
Q |
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| T |
10600356 |
attatttttgtgtcactttttgattggaccaacataaaagatataataagttgagaaatgcatgagtctaatatagcca |
10600434 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 32601515 - 32601572
Alignment:
| Q |
38 |
tctttgcttttcccccataccacagtgtaaagtccacacacaatgataatagctccaa |
95 |
Q |
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| T |
32601515 |
tctttgcttttgccccataccacagtgtaaagaccaataacgatgataatagctccaa |
32601572 |
T |
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