View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6962_low_21 (Length: 354)
Name: NF6962_low_21
Description: NF6962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6962_low_21 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 15071979 - 15071873
Alignment:
| Q |
18 |
acatcagaaatcgccagaacacaaacgaaatcttgaattgcgtatagaaacaaaacgaaccacttctattcttggagctgaggtatatgaagaatggctt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15071979 |
acatcagaaatcgccagaacacaaacgaaatcttgaattgcgtatagaaacaaaacgaaccacttctattcttggagctgaggtatatgaagaatggctt |
15071880 |
T |
|
| Q |
118 |
tttggtc |
124 |
Q |
| |
|
||||||| |
|
|
| T |
15071879 |
tttggtc |
15071873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 42967365 - 42967443
Alignment:
| Q |
18 |
acatcagaaatcgccagaacacaaacgaaatcttgaattgcgtatagaaacaaaacgaaccacttctattcttggagct |
96 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42967365 |
acatcagaaatcgccggaacacaaacgaaattttgaattgcgtatagaaacaaaacgaaccacttctattcttggagct |
42967443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 316 - 354
Target Start/End: Original strand, 22188930 - 22188968
Alignment:
| Q |
316 |
tcagtaatggacttcctttcattcttccttagcctatga |
354 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22188930 |
tcagtaatggacttcctttcattcttccttagcctatga |
22188968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University