View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6962_low_22 (Length: 346)
Name: NF6962_low_22
Description: NF6962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6962_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 49713198 - 49712865
Alignment:
| Q |
1 |
ctcattgcaatcactagctatccaattcaacctaaacccatttctcagtgactcttcaatccctcctttcacaccattttccaccatcgcataaaccact |
100 |
Q |
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| T |
49713198 |
ctcattgcaatcactagctatccaattcaaccgaaccccatttctcagtgactcttcaatccctcctttcacaacattttccaccatcgcataaaccact |
49713099 |
T |
|
| Q |
101 |
tcatccctgcaattctttgacaccaagcttgcatttttatcatcaccatacaatgccacaaccgaactcgttttgttttcttcagagcaaccaattgtgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49713098 |
tcatccctgcaattctttgacaccaagcttgcatttttatcatcgccatacaatgccacaaccgaactcgttttgttttcttcagagcaaccaattgtgt |
49712999 |
T |
|
| Q |
201 |
tcctttgcagctctctgggtagctttgttgaatcgcatccgaagaacaatttcacttcactttggttaggtgcaaagtagaaaatgttaatgggaaaagt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||| |
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| T |
49712998 |
tcctttgcagctctctgggtagctttgttgaatcgcatccgaagaacaatttcacttcactttggttaggtgcaagatagaacatgttatggggaaaagt |
49712899 |
T |
|
| Q |
301 |
gaggttttgggttggtaaaagacaacctttgttg |
334 |
Q |
| |
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|||||||||||||||| ||||||||||||||||| |
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| T |
49712898 |
gaggttttgggttggtgaaagacaacctttgttg |
49712865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 49655676 - 49655343
Alignment:
| Q |
1 |
ctcattgcaatcactagctatccaattcaacctaaacccatttctcagtgactcttcaatccctcctttcacaccattttccaccatcgcataaaccact |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| || || |||| |
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| T |
49655676 |
ctcattgcaatcactagctatccaattcaacctaaacccatttctcagtgactcttcaatccctcctttcacaacattttccaccctcgtattaatcact |
49655577 |
T |
|
| Q |
101 |
tcatccctgcaattctttgacaccaagcttgcatttttatcatcaccatacaatgccacaaccgaactcgttttgttttcttcagagcaaccaattgtgt |
200 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49655576 |
tcatccctgcaattctttgacaccaggcttgcatttttatcatcatcatacaatgccacaaccgaactcgttttgttttcttcagagcaaccaattgtgt |
49655477 |
T |
|
| Q |
201 |
tcctttgcagctctctgggtagctttgttgaatcgcatccgaagaacaatttcacttcactttggttaggtgcaaagtagaaaatgttaatgggaaaagt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||| |
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| T |
49655476 |
tcctttgcagctctctgggtagctttgttgaatcgcatccgaagaacaatttcacttcactttggttaggtgcaagatagaacatgttatggggaaaagt |
49655377 |
T |
|
| Q |
301 |
gaggttttgggttggtaaaagacaacctttgttg |
334 |
Q |
| |
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|||||||||||||||| ||||||||||||||||| |
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| T |
49655376 |
gaggttttgggttggtgaaagacaacctttgttg |
49655343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 186 - 306
Target Start/End: Complemental strand, 28448784 - 28448664
Alignment:
| Q |
186 |
agcaaccaattgtgttcctttgcagctctctgggtagctttgttgaatcgcatccgaagaacaatttcacttcactttggttaggtgcaaagtagaaaat |
285 |
Q |
| |
|
||||||| |||||||||||||||||| ||||| ||||||||||||| |||||||| || |||||| ||| ||||||||| || || |||| ||||| || |
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| T |
28448784 |
agcaaccgattgtgttcctttgcagcactctgagtagctttgttgagtcgcatcccaaaaacaatatcatttcactttgattcggagcaatatagaacat |
28448685 |
T |
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| Q |
286 |
gttaatgggaaaagtgaggtt |
306 |
Q |
| |
|
|| ||||||| ||||||||| |
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|
| T |
28448684 |
gtccatgggaatagtgaggtt |
28448664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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