View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6962_low_25 (Length: 334)
Name: NF6962_low_25
Description: NF6962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6962_low_25 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 216 - 322
Target Start/End: Original strand, 15766768 - 15766874
Alignment:
| Q |
216 |
cttcagtttctgttataaatttgtaaaaatttcttaaagtctatcattaaattgaaaatccatatccatgtaaaattttgcataaatagtaaattatttg |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15766768 |
cttcagtttctgttataaatttgtaaaaatttcttaaagtctatcattaaattgaaaatccatatccatgtaaaattttgcataaatagtaaattatttg |
15766867 |
T |
|
| Q |
316 |
atatatt |
322 |
Q |
| |
|
||||||| |
|
|
| T |
15766868 |
atatatt |
15766874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 6 - 86
Target Start/End: Original strand, 15766627 - 15766707
Alignment:
| Q |
6 |
caaaaaactcctctaggctttttcctagtaatttcaatcaaattttaataaaagcatgttttgagaatcatgcatactgaa |
86 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
15766627 |
caaaaaactcctctaggctttttcctagtaatttcaatcaaattttaataaaagcacgttttgagaatcatgcatactgaa |
15766707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 101 - 179
Target Start/End: Original strand, 15766691 - 15766769
Alignment:
| Q |
101 |
gaatcatgcatactgaacaaactcacgtattaagaattccctttggtactttgaattattatcatttccaatgttaact |
179 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
15766691 |
gaatcatgcatactgaacaaactcacgtattaagaattccctttggtactttgaattattatcatttccaatgtcaact |
15766769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University