View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6962_low_26 (Length: 326)
Name: NF6962_low_26
Description: NF6962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6962_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 5 - 311
Target Start/End: Original strand, 5739103 - 5739419
Alignment:
| Q |
5 |
gctaaattattctaaatctatccggttatctttgtactatcactctattttatactttgaaaccaattgagtgaccaagtatttgatagattacatgaca |
104 |
Q |
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| T |
5739103 |
gctaaattattctaaatctatccggttatctttgtactatcactctattttatactttgaaaccaattgagtgaccaagtatttgatagattacatgaca |
5739202 |
T |
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| Q |
105 |
attcttttttaggggaagaaattcaaatcattccattagataaatagtgagagatataaggtggtacatcaataaacaatt----------gagttagtt |
194 |
Q |
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| T |
5739203 |
attcttttttaggggaagaaactcaaatcattccattagataaatagtgagagatataaggtggtacatcaataaacaattgagagattgagagttagtt |
5739302 |
T |
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| Q |
195 |
tttaatggattgtctgtcctaaatcataagcgacctcaattgtttaccttcggttaaactcaaccaaagagttgttaaatgacaaacctaacaattgtat |
294 |
Q |
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|||||||| ||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5739303 |
tttaatgggttgtctgtcctaactcataagcgacctcaattgcttgccttcggttaaactcaaccaaagagttgttaaatgacaaacctaacaattgtat |
5739402 |
T |
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| Q |
295 |
acgttgctaaataatga |
311 |
Q |
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|||||| |||||||||| |
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| T |
5739403 |
acgttgttaaataatga |
5739419 |
T |
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