View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6962_low_28 (Length: 314)
Name: NF6962_low_28
Description: NF6962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6962_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 19 - 287
Target Start/End: Original strand, 28606537 - 28606805
Alignment:
| Q |
19 |
atcacgaaattcttcctctgacccatcatttagaacctttcttaattcactttctgcacaacgacgaaggcgctcgaaagcaacctgagctatgctttct |
118 |
Q |
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| T |
28606537 |
atcacaaaattcttcctctgacccatcgtttagaacctttcttaattcactttctgcacaatgacgaaggcgctccaaagcaacctgagctatgctttct |
28606636 |
T |
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| Q |
119 |
atgtgctcaaaaaactcaatcttagcattttcattctcaggaagatagtatccatatacataagcccatttgagaactcttctacattcaaccaattgtt |
218 |
Q |
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| T |
28606637 |
atgtgctcaaaaaactcaatcttagcattttcattctcaggaagatagtatccatatacataagcccatttgagaactcttctacattcaaccaattgtt |
28606736 |
T |
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| Q |
219 |
tcaatgcatcctttatgaaatcaaaataagtttctgactttacccatgatataccaactctctttatat |
287 |
Q |
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| T |
28606737 |
tcaatgcatcctttatgaaatcaaaataagtttctgactttacccatgatataccaactctctttatat |
28606805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 19 - 233
Target Start/End: Original strand, 28603345 - 28603562
Alignment:
| Q |
19 |
atcacgaaattcttcctctgacccatcatttagaac---ctttcttaattcactttctgcacaacgacgaaggcgctcgaaagcaacctgagctatgctt |
115 |
Q |
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| T |
28603345 |
atcacaaaattcttcctcggacccattatgtagaagttgctttcttaatccattttctgcaaaatgatgaagcctatccaaaacaacttgagctatgctt |
28603444 |
T |
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| Q |
116 |
tctatgtgctcaaaaaactcaatcttagcattttcattctcaggaagatagtatccatatacataagcccatttgagaactcttctacattcaaccaatt |
215 |
Q |
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| T |
28603445 |
tggatgtgatcaaaaaactcaatcttagcattttcatcctcgggaagatagtatccatatacataactccatctgagaattcttctgcattcaactatgt |
28603544 |
T |
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| Q |
216 |
gtttcaatgcatccttta |
233 |
Q |
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| T |
28603545 |
gtttcaatgcatccttta |
28603562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 125 - 231
Target Start/End: Original strand, 28602114 - 28602220
Alignment:
| Q |
125 |
tcaaaaaactcaatcttagcattttcattctcaggaagatagtatccatatacataagcccatttgagaactcttctacattcaaccaattgtttcaatg |
224 |
Q |
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|||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||| |||| | | |||||||| |||||||| | |||||| ||| |
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| T |
28602114 |
tcaaaaaactcaatcttagcattttcatcctcgggaagatagtattcatatacataactccatctcataactcttcgacattcaattacctgtttccatg |
28602213 |
T |
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| Q |
225 |
catcctt |
231 |
Q |
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||||||| |
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| T |
28602214 |
catcctt |
28602220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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