View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6962_low_32 (Length: 298)
Name: NF6962_low_32
Description: NF6962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6962_low_32 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 17 - 285
Target Start/End: Complemental strand, 45074723 - 45074448
Alignment:
| Q |
17 |
aataagcatatctaggaaattgggagagtgaaagaggaataacataagcttaacttcgaagttgatgtcaaggtgtagcatttttactttgagnnnnnnn |
116 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45074723 |
aataagcatatccaggaaattgggagagtgaaagaggaataacataagcttaacttcgaagttgatgtcaaggtgtagcatttttactttgagaaaaaaa |
45074624 |
T |
|
| Q |
117 |
gaga-------ggggatgtcaaccattcatgaggaaagtaattgtagacattacgcaaaaccaaattttatcacattttacaaagtaaaataatagggat |
209 |
Q |
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| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45074623 |
aaaaaaaaaaaggggatgtcaaccattcatgaggaaagtaattgtaagcattacgcaaaaccaaattttatcacattttacaaagtaaaataatagggat |
45074524 |
T |
|
| Q |
210 |
tgttatgtcaaatttttgcgtggaaataatattcacatcatgccatgtactccctttcattgatgaccatgttctt |
285 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45074523 |
tgttatgccaaatttttgcgtggaaataatattcacatcatgccatgtactccctttcattgatgaccatgttctt |
45074448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 150; Significance: 3e-79; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 120 - 285
Target Start/End: Original strand, 27366431 - 27366596
Alignment:
| Q |
120 |
aggggatgtcaaccattcatgaggaaagtaattgtagacattacgcaaaaccaaattttatcacattttacaaagtaaaataatagggattgttatgtca |
219 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
27366431 |
aggggatgtcaaccattcatgaggaaagtaatggtagacattacgcaaaaccaaattttatcacattttacaaagtaaaataatagggattgttatgcca |
27366530 |
T |
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| Q |
220 |
aatttttgcgtggaaataatattcacatcatgccatgtactccctttcattgatgaccatgttctt |
285 |
Q |
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| T |
27366531 |
aatttttgcgtggaaataatattcacagcatgccatgtactccctttcattgatgaccgtgttctt |
27366596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 120 - 285
Target Start/End: Original strand, 27456778 - 27456943
Alignment:
| Q |
120 |
aggggatgtcaaccattcatgaggaaagtaattgtagacattacgcaaaaccaaattttatcacattttacaaagtaaaataatagggattgttatgtca |
219 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
27456778 |
aggggatgtcaaccattcatgaggaaagtaatggtagacattacgcaaaaccaaattttatcacattttacaaagtaaaataatagggattgttatgcca |
27456877 |
T |
|
| Q |
220 |
aatttttgcgtggaaataatattcacatcatgccatgtactccctttcattgatgaccatgttctt |
285 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |
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| T |
27456878 |
aatttttgcgtggaaataatattcacagcatgccatgtactccctttcattgatgaccgtgttctt |
27456943 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 27366307 - 27366380
Alignment:
| Q |
20 |
aagcatatctaggaaattgggagagtgaaagaggaataacataagcttaacttcgaagttgatgtcaaggtgta |
93 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
27366307 |
aagcatatccaggaaattgggagagtgaaagaggaatatcataagcttaacttcgaagttaatgtcaaggtgta |
27366380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 27456654 - 27456727
Alignment:
| Q |
20 |
aagcatatctaggaaattgggagagtgaaagaggaataacataagcttaacttcgaagttgatgtcaaggtgta |
93 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
27456654 |
aagcatatccaggaaattgggagagtgaaagaggaatatcataagcttaacttcgaagttaatgtcaaggtgta |
27456727 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 117 - 274
Target Start/End: Complemental strand, 23121307 - 23121147
Alignment:
| Q |
117 |
gagaggggatgtcaaccattcatgaggaaagtaattgtagacattacgcaaaaccaaattttatcacattttacaaagtaaaataatagggattgttatg |
216 |
Q |
| |
|
|||||||||||| |||||||| |||||||| ||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
23121307 |
gagaggggatgttaaccattcgtgaggaaaataattgtagtcattaggcaaaaccaaattttatcacatttttgaaagtaaaataattgggattgttatg |
23121208 |
T |
|
| Q |
217 |
tcaaatttt--tgcgtggaaataatattca-catcatgccatgtactccctttcattgatg |
274 |
Q |
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|| |||| || || ||||||||||||| | ||||| ||||| |||||||| ||||||| |
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| T |
23121207 |
ctaattttttatgtgtagaaataatattcatcgtcatgtcatgtgctccctttaattgatg |
23121147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 117 - 184
Target Start/End: Original strand, 22631218 - 22631285
Alignment:
| Q |
117 |
gagaggggatgtcaaccattcatgaggaaagtaattgtagacattacgcaaaaccaaattttatcaca |
184 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| ||||| |||||| |||||||||||||| |
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| T |
22631218 |
gagaggggatgtcaaccattcatgaggaaaataattgtagtcattaggcaaaatcaaattttatcaca |
22631285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 22631105 - 22631163
Alignment:
| Q |
30 |
aggaaattgggagagtgaaagaggaata--acataagcttaacttcgaagttgatgtca |
86 |
Q |
| |
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|||||||||||||||||||||||||||| |||| |||||||||| ||||| |||||| |
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| T |
22631105 |
aggaaattgggagagtgaaagaggaatagcacatttgcttaacttctaagttaatgtca |
22631163 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 17 - 216
Target Start/End: Original strand, 51093793 - 51093991
Alignment:
| Q |
17 |
aataagcatatctaggaaattgggagagtgaaagaggaataacataagcttaacttcgaagttgatgtcaaggtgtag-catttttactttgagnnnnnn |
115 |
Q |
| |
|
|||||||||||| || |||| |||||||||||||||||| | |||| |||||||||| ||||| ||||||||||| || | || ||||||| |
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| T |
51093793 |
aataagcatatccagaaaatagggagagtgaaagaggaacatcatatgcttaacttctaagttaatgtcaaggtgcagtaaaattgactttga--aaaaa |
51093890 |
T |
|
| Q |
116 |
ngagaggggatgtcaaccattcatgaggaaagtaattgtagacattacgcaaaaccaaattttatcacattttacaaagtaaaataatagggattgttat |
215 |
Q |
| |
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|||||||||||||||||||||||||||||||| | |||| ||||| | | ||||||| |||||||||||| |||| | ||||||| || |||| ||| |
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| T |
51093891 |
agagaggggatgtcaaccattcatgaggaaagttacggtagtcattaggatacaccaaatattatcacatttttcaaaattaaataattggaattgatat |
51093990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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