View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6962_low_34 (Length: 296)
Name: NF6962_low_34
Description: NF6962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6962_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 14 - 257
Target Start/End: Complemental strand, 39696757 - 39696514
Alignment:
| Q |
14 |
gacatcatacgagaagatggaagaggcggagtctctcttctcgatacatttcccttctcacgcttcgatgctatcttcgacaaaatatctttatcatcct |
113 |
Q |
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| T |
39696757 |
gacatcatacgagaagatggaagaggcggagtctctcttctcgatacatttcccttctcacgcttcgatgctatcttcgacaaaatatctttatcatcct |
39696658 |
T |
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| Q |
114 |
tcttagcagccctatcagacaaaatcatctctctttgaagttcagtcatctcagaaagtttctttctgtcatcctcatccttataaagatcatcaccaac |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39696657 |
tcttagcagccctatcagacaaaatcatctctctttgaagttcagtcatctcagaaagtttctttctgtcatcctcatccttataaagatcatcaccaac |
39696558 |
T |
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| Q |
214 |
atcagattcatcactcctgtccacctcacgatcagaactaccac |
257 |
Q |
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| T |
39696557 |
atcagattcatcactcctgtccacctcacgatcagaactaccac |
39696514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 62 - 228
Target Start/End: Complemental strand, 35691669 - 35691503
Alignment:
| Q |
62 |
tttcccttctcacgcttcgatgctatcttcgacaaaatatctttatcatccttcttagcagccctatcagacaaaatcatctctctttgaagttcagtca |
161 |
Q |
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||||| ||||||||||| ||||| ||||| ||| | | |||||| ||||| || | ||||||||| ||||||||||||||||||||||||||| ||| |
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| T |
35691669 |
tttcctttctcacgctttgatgcaatctttcccaacaaacttttatcgtccttttttgaagccctatccgacaaaatcatctctctttgaagttcactca |
35691570 |
T |
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| Q |
162 |
tctcagaaagtttctttctgtcatcctcatccttataaagatcatcaccaacatcagattcatcact |
228 |
Q |
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| T |
35691569 |
tctcagaaagcttccgcctgtcatcttcatctttgtagagatcatcgccgatatttgattcatcact |
35691503 |
T |
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