View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6962_low_35 (Length: 291)
Name: NF6962_low_35
Description: NF6962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6962_low_35 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 277
Target Start/End: Complemental strand, 40598238 - 40597979
Alignment:
| Q |
18 |
atcagaactatgcaagaagaaattgctgacttgttagacatgacattcgatagaaacagtgaagctggaagagcaagaagaatattctcaagaatagaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
40598238 |
atcagaactatgcaagaagaaattgctgacttgttagacatgacattcgataaaaaaagtgaaactgtaagagcaagaagaatattctcaagaatagaaa |
40598139 |
T |
|
| Q |
118 |
gtatgagtcgtccaattctagtgattttcgatgatgttcgggtaaaatttgatccagaagatgtaggcattccttgtaatagtaatcgatgcaagatcct |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40598138 |
gtatgagtcgtccaattctagtgattttcgatgatgttcgggtaaaatttgatccagaagatgtaggcattccttgtaatagtaatcgatgcaagatcct |
40598039 |
T |
|
| Q |
218 |
tttgaccgcacttgcccaacaagattgtgaattgattcactccaaaaggaatattcaact |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
40598038 |
tttgaccgcacttgcccaacaagattgtgaattgatgcactccaaaaggaatattcaact |
40597979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 27 - 228
Target Start/End: Original strand, 40333471 - 40333672
Alignment:
| Q |
27 |
atgcaagaagaaattgctgacttgttagacatgacattcgatagaaacagtgaagctggaagagcaagaagaatattctcaagaatagaaagtatgagtc |
126 |
Q |
| |
|
|||||||| |||||||||||||| || | || | ||| ||||||||||||||| ||||||||||||||| |||||| || | ||||||| |||| || |
|
|
| T |
40333471 |
atgcaagatgaaattgctgacttcttgaatataagattagatagaaacagtgaaactggaagagcaagaaaaatattatccacaatagaagatatggatc |
40333570 |
T |
|
| Q |
127 |
gtccaattctagtgattttcgatgatgttcgggtaaaatttgatccagaagatgtaggcattccttgtaatagtaatcgatgcaagatccttttgaccgc |
226 |
Q |
| |
|
||||||| || ||||| || ||||||||||||| ||||||||| | | |||||||| ||||||||||||||||||| ||||||| | ||||||||||| |
|
|
| T |
40333571 |
gtccaatacttgtgatctttgatgatgttcgggcaaaatttgacctacgggatgtaggaattccttgtaatagtaatctatgcaaggttcttttgaccgc |
40333670 |
T |
|
| Q |
227 |
ac |
228 |
Q |
| |
|
|| |
|
|
| T |
40333671 |
ac |
40333672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 27 - 228
Target Start/End: Original strand, 40386749 - 40386950
Alignment:
| Q |
27 |
atgcaagaagaaattgctgacttgttagacatgacattcgatagaaacagtgaagctggaagagcaagaagaatattctcaagaatagaaagtatgagtc |
126 |
Q |
| |
|
|||||||| ||||||||||||| || | || | ||| |||||||||||||||||||||||||||||||||||||| || | ||||||| |||| || |
|
|
| T |
40386749 |
atgcaagatgaaattgctgactccttgaatataagatttgatagaaacagtgaagctggaagagcaagaagaatattatccacaatagaagatatggatc |
40386848 |
T |
|
| Q |
127 |
gtccaattctagtgattttcgatgatgttcgggtaaaatttgatccagaagatgtaggcattccttgtaatagtaatcgatgcaagatccttttgaccgc |
226 |
Q |
| |
|
||||||| || || || || ||||||||||||| ||||||||| | | |||||||| ||||||| ||||||||||||||||||| | ||||||||||| |
|
|
| T |
40386849 |
gtccaatacttgttatctttgatgatgttcgggcaaaatttgacctacgggatgtaggaattccttctaatagtaatcgatgcaaggtacttttgaccgc |
40386948 |
T |
|
| Q |
227 |
ac |
228 |
Q |
| |
|
|| |
|
|
| T |
40386949 |
ac |
40386950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 27 - 228
Target Start/End: Original strand, 40376504 - 40376705
Alignment:
| Q |
27 |
atgcaagaagaaattgctgacttgttagacatgacattcgatagaaacagtgaagctggaagagcaagaagaatattctcaagaatagaaagtatgagtc |
126 |
Q |
| |
|
|||||||| ||||||||||||| || | || | ||| ||||||||||||||||||| ||||||||||| |||||| || | |||||||| |||| || |
|
|
| T |
40376504 |
atgcaagatgaaattgctgactccttgaatataagatttgatagaaacagtgaagctgaaagagcaagaaaaatattatccacaatagaaaatatggatc |
40376603 |
T |
|
| Q |
127 |
gtccaattctagtgattttcgatgatgttcgggtaaaatttgatccagaagatgtaggcattccttgtaatagtaatcgatgcaagatccttttgaccgc |
226 |
Q |
| |
|
||| || || ||||| || ||||||||||||| || |||||| | | |||||||| |||||||||| |||||||| ||||||| | ||||||||||| |
|
|
| T |
40376604 |
atcctatacttgtgatctttgatgatgttcgggcaagatttgacctacgggatgtaggaattccttgtactagtaatctatgcaaggttcttttgaccgc |
40376703 |
T |
|
| Q |
227 |
ac |
228 |
Q |
| |
|
|| |
|
|
| T |
40376704 |
ac |
40376705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 77 - 247
Target Start/End: Original strand, 40325959 - 40326129
Alignment:
| Q |
77 |
tgaagctggaagagcaagaagaatattctcaagaatagaaagtatgagtcgtccaattctagtgattttcgatgatgttcgggtaaaatttgatccagaa |
176 |
Q |
| |
|
||||||||||||| |||||| ||||| || | | ||| || |||| ||| | |||||| ||||| || ||||||||| || ||| ||||||||||| |
|
|
| T |
40325959 |
tgaagctggaagaacaagaaaaatatacttgacattagcaaatatggatcgccaaattcttgtgatcttggatgatgtttcggaaaatcttgatccagaa |
40326058 |
T |
|
| Q |
177 |
gatgtaggcattccttgtaatagtaatcgatgcaagatccttttgaccgcacttgcccaacaagattgtga |
247 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| ||||||||||| || | ||||||||||||||| |
|
|
| T |
40326059 |
aaggtaggcattccttgtaatagtaatcgatgcaaggtccttttgaccacatgtcgccaacaagattgtga |
40326129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 111 - 253
Target Start/End: Original strand, 40277434 - 40277576
Alignment:
| Q |
111 |
atagaaagtatgagtcgtccaattctagtgattttcgatgatgttcgggtaaaatttgatccagaagatgtaggcattccttgtaatagtaatcgatgca |
210 |
Q |
| |
|
||||||| |||| ||||||||| || ||||| || ||||||||||||| |||||| | ||||| |||||||||||||| || ||||||||||||| |
|
|
| T |
40277434 |
atagaaaatatggatcgtccaatacttgtgatctttgatgatgttcgggaaaaattcaacccagaggatgtaggcattccactgaaaagtaatcgatgca |
40277533 |
T |
|
| Q |
211 |
agatccttttgaccgcacttgcccaacaagattgtgaattgat |
253 |
Q |
| |
|
|| ||||||||| | || || ||||||||| ||||| ||||| |
|
|
| T |
40277534 |
aggtccttttgatcacatttttccaacaagactgtgacttgat |
40277576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 125 - 223
Target Start/End: Original strand, 40310727 - 40310825
Alignment:
| Q |
125 |
tcgtccaattctagtgattttcgatgatgttcgggtaaaatttgatccagaagatgtaggcattccttgtaatagtaatcgatgcaagatccttttgac |
223 |
Q |
| |
|
|||||||||||| ||||| || ||||||||| ||| ||| |||||| || || |||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
40310727 |
tcgtccaattcttgtgatcttggatgatgtttgggaaaatcttgatcttgaggaattaggcattccttgtaatagtaatcgatgcaaggttcttttgac |
40310825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University