View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6962_low_39 (Length: 272)
Name: NF6962_low_39
Description: NF6962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6962_low_39 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 16145129 - 16145395
Alignment:
| Q |
1 |
ttagtattgattaatttatgagaagaaacaacgatccatatgaagattatatacaaatcattttattacttatgcaatttatacacttattgaatagcct |
100 |
Q |
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| T |
16145129 |
ttagtattgattaatttatgagaagaaacaacgatccatatgaagattatatacatatcattttattacttatgcaatttatacacttattcaatagctt |
16145228 |
T |
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| Q |
101 |
aataggattgaggataatgtcatgtttaagcacaaggtacattttcgggatgtcaatggataccttttgagcagagtattatagtgctcatccccatgca |
200 |
Q |
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| T |
16145229 |
aataggattgaggataatgtgatgtttaagcatgaggtacattttagggatgttaatgggtaccctttcagcagagtattatagtgctcatccccatgca |
16145328 |
T |
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| Q |
201 |
catatttnnnnnnnnnnnntactcatacacgagcccatattctctagacaacaagtttgatgtccatctc |
270 |
Q |
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| T |
16145329 |
catattt---aaaaaataatactcacacacgagcctatattctctagacaacaagtttggtgtccgtctc |
16145395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 3 - 191
Target Start/End: Original strand, 16174649 - 16174836
Alignment:
| Q |
3 |
agtattgattaatttatgagaagaaacaacgatccatatgaagattatatacaaatcattttattacttatgcaatttatacacttattgaatagcctaa |
102 |
Q |
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| T |
16174649 |
agtattgattaatt-atgagtagaaacaacgattcatatgtagattatatacttatcattttattacttatggaatttgtacacttgttgaatagcctaa |
16174747 |
T |
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| Q |
103 |
taggattgaggataatgtcatgtttaagcacaaggtacattttcgggatgtcaatggataccttttgagcagagtattatagtgctcat |
191 |
Q |
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| T |
16174748 |
taagattgaggataatgtcatgtttaagcacggagtacagtttagggatgtcaattggtatcctttgagcagagtattatagtgctcat |
16174836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 44 - 207
Target Start/End: Original strand, 16153773 - 16153937
Alignment:
| Q |
44 |
agattatatacaaatcattttattacttatgcaatttatacacttattgaatagcctaataggattgaggataatgtcatgtttaagcacaaggtacatt |
143 |
Q |
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| T |
16153773 |
agattatatacttatcattttattacttatgcaatttatacacttgttgaatagcctaataagattga-gataatttcatgtttaagcaccggatacatt |
16153871 |
T |
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| Q |
144 |
ttcgggatgtcaatggataccttttgagcagagta--ttatagtgctcatccccatgcacatattt |
207 |
Q |
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| T |
16153872 |
ttagggatgtcaatgggcgccctttgagtagagtactatataatgctcatccccattcacatattt |
16153937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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