View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6962_low_40 (Length: 271)
Name: NF6962_low_40
Description: NF6962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6962_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 6886601 - 6886857
Alignment:
| Q |
1 |
actatttaagctttagatcataaagaagtacccgaatgctcgccttgtgttctgcaacaatttatgcattgaacttgacaacctatatggttaaatatta |
100 |
Q |
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| T |
6886601 |
actatttaagctttagatcataaagaagtaccagaatgctcgccttgtgttctgcaacaatttatgcattgaacttgacaacctatatggttaaatatta |
6886700 |
T |
|
| Q |
101 |
gagttcataggggagttggagtgctcacttttcattgtttcaacattctttataattcatcacttgtcatcatgtgagtaatatagggttttaaaaacta |
200 |
Q |
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| T |
6886701 |
gagttcataggggagttggagtgctcacttttcattgtttcaacattctttataattcatcacttgtcatcatgtgagtaatatagggtttttaaaacta |
6886800 |
T |
|
| Q |
201 |
ggtctaattctataagagacaattctattcaataagtatatccaaccaccgatgatt |
257 |
Q |
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| T |
6886801 |
ggtctaattctataagagacaattctattcaataagtatatccaaccaccgatgatt |
6886857 |
T |
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