View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6962_low_44 (Length: 248)

Name: NF6962_low_44
Description: NF6962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6962_low_44
NF6962_low_44
[»] chr4 (9 HSPs)
chr4 (23-220)||(40760945-40761142)
chr4 (25-220)||(52918043-52918238)
chr4 (23-220)||(38989252-38989449)
chr4 (23-220)||(45658070-45658268)
chr4 (24-220)||(13721882-13722078)
chr4 (23-220)||(40691530-40691727)
chr4 (23-220)||(55610243-55610433)
chr4 (83-220)||(11649068-11649205)
chr4 (120-220)||(53270769-53270868)
[»] chr7 (11 HSPs)
chr7 (23-220)||(35583613-35583810)
chr7 (23-220)||(33851452-33851649)
chr7 (23-220)||(110074-110271)
chr7 (23-220)||(15031155-15031352)
chr7 (23-220)||(29330827-29331024)
chr7 (23-220)||(38000011-38000208)
chr7 (23-155)||(41792594-41792726)
chr7 (23-126)||(7253821-7253924)
chr7 (115-220)||(43747858-43747963)
chr7 (168-220)||(7254089-7254141)
chr7 (165-208)||(22203367-22203410)
[»] chr6 (6 HSPs)
chr6 (23-220)||(13038296-13038493)
chr6 (23-220)||(29436299-29436496)
chr6 (23-220)||(34950260-34950457)
chr6 (24-141)||(12303907-12304023)
chr6 (82-161)||(20386692-20386771)
chr6 (115-176)||(33554183-33554244)
[»] chr1 (13 HSPs)
chr1 (23-220)||(39599596-39599793)
chr1 (23-220)||(4852745-4852942)
chr1 (23-220)||(10221794-10221991)
chr1 (23-220)||(10311248-10311445)
chr1 (23-220)||(5748405-5748602)
chr1 (25-217)||(18277904-18278096)
chr1 (23-220)||(7198585-7198782)
chr1 (62-220)||(7563151-7563309)
chr1 (23-220)||(50890393-50890590)
chr1 (23-220)||(17384454-17384651)
chr1 (23-220)||(30516889-30517086)
chr1 (100-184)||(15499935-15500019)
chr1 (163-220)||(22334148-22334205)
[»] chr3 (13 HSPs)
chr3 (25-220)||(3940001-3940196)
chr3 (23-220)||(44206261-44206458)
chr3 (25-220)||(21449215-21449409)
chr3 (30-220)||(41973187-41973377)
chr3 (23-216)||(49325866-49326059)
chr3 (23-212)||(47373320-47373508)
chr3 (23-220)||(8484978-8485174)
chr3 (34-220)||(48063603-48063790)
chr3 (23-214)||(21978439-21978631)
chr3 (23-214)||(22000870-22001062)
chr3 (23-208)||(9331922-9332107)
chr3 (23-213)||(18877422-18877600)
chr3 (23-73)||(22163054-22163104)
[»] chr2 (9 HSPs)
chr2 (24-220)||(5462934-5463130)
chr2 (23-217)||(15111900-15112094)
chr2 (24-220)||(5936891-5937087)
chr2 (25-213)||(18964721-18964909)
chr2 (23-220)||(34949880-34950077)
chr2 (82-183)||(33946243-33946344)
chr2 (82-147)||(2734623-2734688)
chr2 (115-196)||(41255518-41255599)
chr2 (112-160)||(42014750-42014798)
[»] chr5 (9 HSPs)
chr5 (23-201)||(24854467-24854645)
chr5 (23-200)||(6431185-6431362)
chr5 (23-217)||(41614912-41615106)
chr5 (23-209)||(31470723-31470909)
chr5 (23-159)||(5342631-5342767)
chr5 (24-201)||(27949900-27950077)
chr5 (82-197)||(10133541-10133656)
chr5 (82-160)||(8241664-8241742)
chr5 (82-183)||(28443674-28443775)
[»] chr8 (6 HSPs)
chr8 (23-206)||(24832144-24832327)
chr8 (30-216)||(10292-10478)
chr8 (83-220)||(41836057-41836194)
chr8 (82-183)||(16796064-16796165)
chr8 (82-161)||(12191382-12191461)
chr8 (82-161)||(12435810-12435889)
[»] scaffold0168 (1 HSPs)
scaffold0168 (23-220)||(16878-17075)


Alignment Details
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 23 - 220
Target Start/End: Original strand, 40760945 - 40761142
Alignment:
Q  23 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 122  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  40760945 gctagcggcagtctactacaacggtggaacaccaccccatctgtttaggattcgagacaatgtcaccctctccgggctgaaggatgatttggatcaaatc 40761044  T
Q  123 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 220  Q
    ||||||||||| ||||||||||||| ||||||||| ||| ||||| ||||| |||||||||||||||||| ||||| |||||||||||||||||||||    
T  40761045 aaccgtcaactcaaccacaaagacacgaggagggttgacggagttcaatatcgatgtccattatccgacttagccgaatctcttcgcttcagccggat 40761142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 25 - 220
Target Start/End: Original strand, 52918043 - 52918238
Alignment:
Q  25 tagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaa 124  Q
    ||||| |||||||||||||||||||||||||||||  ||||||||||||||||||  |||||||||||||||| ||||||||||| ||||||||||||||    
T  52918043 tagcgacagtctactacaacggtggaacaccaccccatctgtttaggattcgagaggatgtcaccctctccgggctgaaggatgagctggatcaaatcaa 52918142  T
Q  125 ccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 220  Q
    ||||||||| ||||||||||||| ||||||||||| | ||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||    
T  52918143 ccgtcaactcaaccacaaagacacgaggagggtggtcggagttgaatatcgatgtccattgtccgactcagccggatctctttgcttcagccggat 52918238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 23 - 220
Target Start/End: Original strand, 38989252 - 38989449
Alignment:
Q  23 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 122  Q
    |||||||||||||||||||||||||||||||||||||  ||| | |||||||   ||| |||| ||||||||||| ||||||||||| ||||||||||||    
T  38989252 gctagcggcagtctactacaacggtggaacaccaccccatctatctaggattaacgacgatgtaaccctctccgggctgaaggatgagctggatcaaatc 38989351  T
Q  123 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 220  Q
    ||||||||||| ||||||||||||| ||||||||||| | ||||||||||| |||||||||| || |||||| |||||||||||||||||||||||||    
T  38989352 aaccgtcaactcaaccacaaagacacgaggagggtggtcggagttgaatatcgatgtccattgtctgactcatccggatctcttcgcttcagccggat 38989449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 23 - 220
Target Start/End: Original strand, 45658070 - 45658268
Alignment:
Q  23 gctagcggcagtctactacaacggtggaacaccaccctg-tctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaat 121  Q
    |||||||||||||||||||||||||||||||||||||   ||||||||||||||||||| |||||||||||||| | ||||||||||| |||||||||||    
T  45658070 gctagcggcagtctactacaacggtggaacaccacccccatctgtttaggattcgagacgatgtcaccctctcctggctgaaggatgagctggatcaaat 45658169  T
Q  122 caaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 220  Q
    |||||||||||| ||||||| |||||    |||||||| | ||||||||||| |||||||||| || ||||||||||||||||||||||| ||||||||    
T  45658170 caaccgtcaactcaaccacagagacacatagagggtggtcggagttgaatatcgatgtccattgtctgactcagccggatctcttcgctttagccggat 45658268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 24 - 220
Target Start/End: Complemental strand, 13722078 - 13721882
Alignment:
Q  24 ctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatca 123  Q
    ||||| ||| ||||||||||||||||||||||||||  ||||||||||||||||||  |||||||||||||||  ||||||||| | |||||||||||||    
T  13722078 ctagcagcaatctactacaacggtggaacaccaccccatctgtttaggattcgagatgatgtcaccctctccgagctgaaggataagctggatcaaatca 13721979  T
Q  124 accgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 220  Q
    |||||||||| ||||||||||||| ||||||||||| | ||||||||||| ||||||| || ||||||||| |||||| |||||||||||| |||||    
T  13721978 accgtcaactcaaccacaaagacacgaggagggtggtcggagttgaatatcgatgtccgttgtccgactcaaccggatatcttcgcttcagtcggat 13721882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 23 - 220
Target Start/End: Original strand, 40691530 - 40691727
Alignment:
Q  23 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 122  Q
    ||||||| || ||||||||||||||| |||| |||||  ||||||||||||||||||| ||||||||||||||   ||||||||||| ||| ||||||||    
T  40691530 gctagcgacaatctactacaacggtgtaacatcaccccatctgtttaggattcgagacgatgtcaccctctccaagctgaaggatgagctgaatcaaatc 40691629  T
Q  123 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 220  Q
    ||||||||||| ||||||||||||| ||||||||||| | ||||||||||| ||||||| || | ||||||| |||||||||||||||||||||||||    
T  40691630 aaccgtcaactcaaccacaaagacacgaggagggtggtcggagttgaatatcgatgtccgttgttcgactcaaccggatctcttcgcttcagccggat 40691727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 23 - 220
Target Start/End: Original strand, 55610243 - 55610433
Alignment:
Q  23 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 122  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||  | |||||||| ||| ||||||      
T  55610243 gctagcggcagtctactacaacggtggaacaccaccccatctgtttaggattcgagacgatgtcaccctctccgggttaaaggatgagctgaatcaaa-- 55610340  T
Q  123 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 220  Q
         |||||| ||||||||||||| ||||||||||| | ||||||||||| |||||||||| ||| |||||| ||||||||||||||||||||||||    
T  55610341 -----tcaactcaaccacaaagacacgaggagggtggtcggagttgaatatcgatgtccattgtccaactcagtcggatctcttcgcttcagccggat 55610433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 83 - 220
Target Start/End: Complemental strand, 11649205 - 11649068
Alignment:
Q  83 tgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtcca 182  Q
    ||||||||||| ||| ||||||||||| ||||||||||||||| ||||||| ||||||| ||||| ||||||||||| | | ||||||||| ||  ||||    
T  11649205 tgtcaccctcttcgggctgaaggatgagctggatcaaatcaactgtcaactcaaccacagagacatgaggagggtggtcggtgttgaatatcgaattcca 11649106  T
Q  183 ttatccgactcagccggatctcttcgcttcagccggat 220  Q
    || ||||| |||||| ||||||| ||||||||||||||    
T  11649105 ttgtccgaatcagccagatctctacgcttcagccggat 11649068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 120 - 220
Target Start/End: Complemental strand, 53270868 - 53270769
Alignment:
Q  120 atcaaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccgga 219  Q
    |||||||||||||| || |||| ||||| ||||| ||||| |  |||||||||| |||||||||| ||||||||| | ||| ||||||||||||||||||    
T  53270868 atcaaccgtcaactcaatcacagagacacgaggaaggtggtcgaagttgaatatcgatgtccattgtccgactcaactgga-ctcttcgcttcagccgga 53270770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 146; Significance: 5e-77; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 23 - 220
Target Start/End: Original strand, 35583613 - 35583810
Alignment:
Q  23 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 122  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||    
T  35583613 gctagcggcagtctactacaacggtggaacaccaccccatctgtttaggattcgagacgatgtcaccctctccggactgaaggatgagttggatcaaatc 35583712  T
Q  123 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 220  Q
    ||| ||||||| ||||||||||||||||||||||||| | ||||||||||| |||||||||| ||||||||||| |||||||||||||| ||||||||    
T  35583713 aactgtcaactcaaccacaaagacaagaggagggtggtcggagttgaatatcgatgtccattgtccgactcagctggatctcttcgctttagccggat 35583810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 23 - 220
Target Start/End: Complemental strand, 33851649 - 33851452
Alignment:
Q  23 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 122  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||  ||||||||||| ||||||||||||    
T  33851649 gctagcggcagtctactacaacggtggaacaccaccccatctgtttaggattcgagacgatgtcaccctctccgagctgaaggatgagctggatcaaatc 33851550  T
Q  123 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 220  Q
    ||||||||||| ||||||||||||| ||||||||||| | ||||||||||| ||| |||||| |||||||||||| ||||||||||||||| ||||||    
T  33851549 aaccgtcaactcaaccacaaagacacgaggagggtggtcggagttgaatatcgatatccattgtccgactcagccagatctcttcgcttcatccggat 33851452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 23 - 220
Target Start/End: Complemental strand, 110271 - 110074
Alignment:
Q  23 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 122  Q
    ||||||||| ||||| |||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||    
T  110271 gctagcggcggtctattacaacggtggaacaccaccccatctgtttaggattcgagacgatgtcaccctctccgggctgaaggatgagctggatcaaatc 110172  T
Q  123 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 220  Q
    ||||||||||| ||||||||||||| ||||||||||| | ||||||||||| |||||||||| ||||| ||||| | ||||||| |||||||||||||    
T  110171 aaccgtcaactcaaccacaaagacacgaggagggtggtcggagttgaatatcgatgtccattgtccgaatcagcagaatctctttgcttcagccggat 110074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 23 - 220
Target Start/End: Original strand, 15031155 - 15031352
Alignment:
Q  23 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 122  Q
    |||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||| |||||||||||||||   |||||||||| ||| ||||||||    
T  15031155 gctagcggcagtctactacaacggtggaacaccaacccatctgtttaggattcgagacgatgtcaccctctccgagatgaaggatgagctgaatcaaatc 15031254  T
Q  123 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 220  Q
    ||| ||||||| ||||||||||||| ||||||||||| ||||||||||||| ||||||| || ||||||||| |||||||||||||||||||||||||    
T  15031255 aactgtcaactcaaccacaaagacacgaggagggtggtcagagttgaatatcgatgtccgttgtccgactcaaccggatctcttcgcttcagccggat 15031352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 23 - 220
Target Start/End: Original strand, 29330827 - 29331024
Alignment:
Q  23 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 122  Q
    |||||| ||||||||||||| ||||||||||||||||  ||||||||||||||||||| ||| |||||||||||| ||||||||||| ||||||||||||    
T  29330827 gctagcagcagtctactacagcggtggaacaccaccccatctgtttaggattcgagacgatgccaccctctccgggctgaaggatgagctggatcaaatc 29330926  T
Q  123 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 220  Q
    |||| |||||| || |||||||||| ||||||||||| | ||||||||||| |||||||||  ||| ||||||||||||||| |||||||||| ||||    
T  29330927 aaccatcaactcaatcacaaagacacgaggagggtggtcggagttgaatatcgatgtccatcgtccaactcagccggatctcatcgcttcagctggat 29331024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 23 - 220
Target Start/End: Complemental strand, 38000208 - 38000011
Alignment:
Q  23 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 122  Q
    |||||||||| ||||||||||||||||||||||||||  | ||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||    
T  38000208 gctagcggcaatctactacaacggtggaacaccaccccatttgtttaggattcgagacgatgtcaccctctccgggctgaaggatgagctggatcaaatc 38000109  T
Q  123 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 220  Q
    |||||||||||  | |||||||||| ||| |||||||   ||||||||||| ||||| |||| ||||||||||||  |||||||||||||||||||||    
T  38000108 aaccgtcaactcgaacacaaagacacgagcagggtggttggagttgaatatcgatgttcattgtccgactcagccatatctcttcgcttcagccggat 38000011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 23 - 155
Target Start/End: Complemental strand, 41792726 - 41792594
Alignment:
Q  23 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 122  Q
    |||||||||| |||||||||||| |||||||||||||  | ||||||||||||||||| |||||||||||| ||| ||||||||||| || |||||||||    
T  41792726 gctagcggcaatctactacaacgatggaacaccaccccatatgtttaggattcgagacgatgtcaccctcttcgggctgaaggatgagctagatcaaatc 41792627  T
Q  123 aaccgtcaacttaaccacaaagacaagaggagg 155  Q
    ||||||||||| ||||||||||||| |||||||    
T  41792626 aaccgtcaactcaaccacaaagacacgaggagg 41792594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 23 - 126
Target Start/End: Original strand, 7253821 - 7253924
Alignment:
Q  23 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 122  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||| ||| |||||||||||  ||||||||||     
T  7253821 gctagcggcagtctactacaacggtggaacaccaccccatctgtttaggattcgagacgatgtcaccctcttcgggctgaaggatgagttggatcaaatt 7253920  T
Q  123 aacc 126  Q
    ||||    
T  7253921 aacc 7253924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 115 - 220
Target Start/End: Original strand, 43747858 - 43747963
Alignment:
Q  115 atcaaatcaaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcag 214  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||| | | ||||||||| |||||||||| |||||||||| |  |||||||||||||||    
T  43747858 atcaaatcaaccgtcaactcaaccacaaagacacgaggagggtggtcggggttgaatatcgatgtccattgtccgactcagtcaaatctcttcgcttcag 43747957  T
Q  215 ccggat 220  Q
    ||||||    
T  43747958 ccggat 43747963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 7254089 - 7254141
Alignment:
Q  168 gaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 220  Q
    |||||| |||||||||| |||||||||||||||||||||||||||| ||||||    
T  7254089 gaatatcgatgtccattgtccgactcagccggatctcttcgcttcaaccggat 7254141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 208
Target Start/End: Original strand, 22203367 - 22203410
Alignment:
Q  165 gttgaatattgatgtccattatccgactcagccggatctcttcg 208  Q
    ||||||||| | |||||||| |||||||||||||||||||||||    
T  22203367 gttgaatatcgttgtccattgtccgactcagccggatctcttcg 22203410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 146; Significance: 5e-77; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 23 - 220
Target Start/End: Complemental strand, 13038493 - 13038296
Alignment:
Q  23 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 122  Q
    |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||| ||    
T  13038493 gctagcggcagtatactacaacggtggaacatcaccctgtctgtttaggattcgagacgatgtcaccctctccgggctgaaggatgagctggatcaattc 13038394  T
Q  123 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 220  Q
    ||||||||||| ||||||||||||| ||||||||||| | ||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||    
T  13038393 aaccgtcaactcaaccacaaagacacgaggagggtggtcggagttgaatatcgatgtccattgtccgactcagccagatctcttcgcttcagccggat 13038296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 23 - 220
Target Start/End: Complemental strand, 29436496 - 29436299
Alignment:
Q  23 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 122  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||  |||||||||||  ||||||||| |    
T  29436496 gctagcggcagtctactacaacggtggaacaccaccccatctgtttaggattcgagacgatgtcaccctctccgagctgaaggatgagttggatcaaagc 29436397  T
Q  123 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 220  Q
    ||||||||||| ||||||||| ||| ||||||||||| | ||||||||||| ||||||  || |  |||||| |||||||||||||||||||||||||    
T  29436396 aaccgtcaactcaaccacaaacacacgaggagggtggtcggagttgaatatcgatgtctgttgtttgactcaaccggatctcttcgcttcagccggat 29436299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 23 - 220
Target Start/End: Complemental strand, 34950457 - 34950260
Alignment:
Q  23 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 122  Q
    |||||||| ||||||||||||||||||||||||||||  ||| ||||||||||||||| |||||||||||||||  || || ||||| ||||||||||||    
T  34950457 gctagcggaagtctactacaacggtggaacaccaccccatctatttaggattcgagacgatgtcaccctctccgagctaaatgatgagctggatcaaatc 34950358  T
Q  123 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 220  Q
    ||||||||||| ||||||||||||| ||||||||||| | ||||||||||| ||||| | || |||||| || |||||||||||||||||||||||||    
T  34950357 aaccgtcaactcaaccacaaagacacgaggagggtggtcggagttgaatatcgatgttcgttgtccgacacaaccggatctcttcgcttcagccggat 34950260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 141
Target Start/End: Original strand, 12303907 - 12304023
Alignment:
Q  24 ctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatca 123  Q
    ||||||||||||||| | ||| | |||| |||||||  |||||||||||||||  || | |||||  |||| || ||||||||||| |||||||||||||    
T  12303907 ctagcggcagtctacaataacaggggaaaaccaccccatctgtttaggattcgcaacgacgtcactttctcggg-ctgaaggatgagctggatcaaatca 12304005  T
Q  124 accgtcaacttaaccaca 141  Q
    |||||||||| |||||||    
T  12304006 accgtcaactcaaccaca 12304023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 161
Target Start/End: Original strand, 20386692 - 20386771
Alignment:
Q  82 atgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaacttaaccacaaagacaagaggagggtggac 161  Q
    ||||||| ||||||||  |||||||| | || |||||||||||||||||||| ||||| | |||||  ||||| ||||||    
T  20386692 atgtcacgctctccgggttgaaggatcagctagatcaaatcaaccgtcaactcaaccatagagacacaaggagagtggac 20386771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 176
Target Start/End: Original strand, 33554183 - 33554244
Alignment:
Q  115 atcaaatcaaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattga 176  Q
    ||||||||||||||||||| ||||| | |||||  ||||| |||||||| ||||| ||||||    
T  33554183 atcaaatcaaccgtcaactcaaccatagagacacaaggagagtggacagtgttgattattga 33554244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 23 - 220
Target Start/End: Complemental strand, 39599793 - 39599596
Alignment:
Q  23 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 122  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||  ||||||||||| ||||||||||||    
T  39599793 gctagcggcagtctactacaacggtggaacaccaccccgtttgtttaggatttgagacaatgtcaccctctccgagctgaaggatgagctggatcaaatc 39599694  T
Q  123 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 220  Q
    ||||||||||| ||||||| ||||| ||||||||||| | ||||||||||| ||||||| || ||||||||| |||||||||||||||||||||||||    
T  39599693 aaccgtcaactcaaccacagagacacgaggagggtggtcggagttgaatatcgatgtccgttgtccgactcaaccggatctcttcgcttcagccggat 39599596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 23 - 220
Target Start/End: Complemental strand, 4852942 - 4852745
Alignment:
Q  23 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 122  Q
    |||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||| |||||||||||||||  ||||||||||| ||||||||||||    
T  4852942 gctagcggcagtctactagaacggtggaacaccaccccatctgtttaggattcgagacgatgtcaccctctccgagctgaaggatgagctggatcaaatc 4852843  T
Q  123 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 220  Q
    ||| ||||||| ||||||| ||||| |||||||||||  |||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||    
T  4852842 aactgtcaactcaaccacagagacacgaggagggtggttagagttgaatatcgatgtccattgtccgactcaaccggatctcttcgcttcagccggat 4852745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 23 - 220
Target Start/End: Original strand, 10221794 - 10221991
Alignment:
Q  23 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 122  Q
    ||||||||| ||||| |||||  ||||||||||||||  ||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||    
T  10221794 gctagcggctgtctattacaattgtggaacaccaccccatctgtttaggattcgagacgatgtcaccctctccgggctgaaggatgagctggatcaaatc 10221893  T
Q  123 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 220  Q
    ||||||||||| ||||||||||||| ||||||||||| | | ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  10221894 aaccgtcaactcaaccacaaagacacgaggagggtggtcggggttgaatatcgatgtccattgtccgactcagccggatctcttcgcttcagccggat 10221991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 23 - 220
Target Start/End: Original strand, 10311248 - 10311445
Alignment:
Q  23 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 122  Q
    |||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||  |||||||||||||||  ||||||||||| ||||||||||||    
T  10311248 gctagcggcagtctactacaactgtggaacaccaccccatctgtttaggattcgagatgatgtcaccctctccgagctgaaggatgagctggatcaaatc 10311347  T
Q  123 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 220  Q
    ||||||||||| ||||||||||||| ||||||||||| | ||||||||||| ||||||| || || |||||| |||||||||||||||||||||||||    
T  10311348 aaccgtcaactcaaccacaaagacacgaggagggtggtcggagttgaatatcgatgtcctttgtctgactcatccggatctcttcgcttcagccggat 10311445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 23 - 220
Target Start/End: Original strand, 5748405 - 5748602
Alignment:
Q  23 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 122  Q
    ||||| ||||||||||||||||||||||||||||||   ||||||||||||||||||| |||||||||||| ||  |||||||| || ||||||||||||    
T  5748405 gctagtggcagtctactacaacggtggaacaccaccgcatctgtttaggattcgagacgatgtcaccctcttcgagctgaaggaggagctggatcaaatc 5748504  T
Q  123 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 220  Q
    ||||||||| | ||||||||||||| |||||||||||  ||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||    
T  5748505 aaccgtcaattcaaccacaaagacacgaggagggtggttagagttgaatattgatgtccattgttcgactcagccggatctattcgcttcagccggat 5748602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 25 - 217
Target Start/End: Complemental strand, 18278096 - 18277904
Alignment:
Q  25 tagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaa 124  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||   |||||||| || | |||||||||||    
T  18278096 tagcggcagtctactacaacggtggaacaccaccccatctgtttaggattcgagactatgtcaccctctccgtgttgaaggattattttgatcaaatcaa 18277997  T
Q  125 ccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccg 217  Q
    ||||||||| ||||||||||||| ||||||||||| | ||||||||||| |||||||||| ||||||||| |||||| |||||||||||||||    
T  18277996 ccgtcaactcaaccacaaagacacgaggagggtggtcggagttgaatatcgatgtccattgtccgactcatccggatatcttcgcttcagccg 18277904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 23 - 220
Target Start/End: Original strand, 7198585 - 7198782
Alignment:
Q  23 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 122  Q
    |||||||||||| ||||||||||||||||||| ||||  ||||||||||||| ||||| |||||||| ||||||  |||||||| ||   ||||||||||    
T  7198585 gctagcggcagtatactacaacggtggaacactaccccatctgtttaggattggagacgatgtcaccatctccgagctgaaggacgagagggatcaaatc 7198684  T
Q  123 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 220  Q
    ||||||||||| ||| ||||||||| ||||||||||| ||||||||||||| ||||||| || ||||||||| ||||||||||| |||||||||||||    
T  7198685 aaccgtcaactcaactacaaagacacgaggagggtggtcagagttgaatatcgatgtccgttgtccgactcaaccggatctctttgcttcagccggat 7198782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 62 - 220
Target Start/End: Original strand, 7563151 - 7563309
Alignment:
Q  62 tctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaacttaaccacaaagacaagaggagggtggac 161  Q
    ||||||||||||||   || |||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||| ||||| ||||||||||| |    
T  7563151 tctgtttaggattcacaacgatgtcaccctctccgggctgaaggatgagctggatcaaatcaaccgtcaactcaaccacagagacacgaggagggtggtc 7563250  T
Q  162 agagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 220  Q
     | ||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||    
T  7563251 ggtgttgaatatcgatgtccattgtccgactcagtcggatctcttcgcttcagccggat 7563309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 23 - 220
Target Start/End: Complemental strand, 50890590 - 50890393
Alignment:
Q  23 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 122  Q
    |||||| ||||| ||||| || || |||| |||||||  | |||||||||||||  || ||||||||||| | || ||||||||||||||||||||||||    
T  50890590 gctagcagcagtatactaaaatgggggaaaaccaccccatatgtttaggattcgcaacgatgtcaccctcactgggctgaaggatgatctggatcaaatc 50890491  T
Q  123 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 220  Q
    ||||||||||| ||||||| ||||| ||||||||||| | | ||||||||| |||||| ||| ||||||||||||||||||||||| |||||||||||    
T  50890490 aaccgtcaactcaaccacagagacacgaggagggtggtctgtgttgaatatcgatgtcaattgtccgactcagccggatctcttcggttcagccggat 50890393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 23 - 220
Target Start/End: Original strand, 17384454 - 17384651
Alignment:
Q  23 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 122  Q
    ||||| || ||||||||||||||||| ||||||||||  ||||||||||||| |  || ||||||||||||| || ||||||| ||| ||||||||||||    
T  17384454 gctagtgggagtctactacaacggtgaaacaccaccccatctgtttaggatttgcaacgatgtcaccctctcagggctgaagggtgagctggatcaaatc 17384553  T
Q  123 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 220  Q
    || |||||| | ||||||| ||||| ||||||||||| | | ||||||||| ||| ||||||  |||| ||| |||||||||||||||||||| ||||    
T  17384554 aatcgtcaaatcaaccacagagacacgaggagggtggtcggtgttgaatatcgatctccattgaccgaatcatccggatctcttcgcttcagcaggat 17384651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 23 - 220
Target Start/End: Original strand, 30516889 - 30517086
Alignment:
Q  23 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 122  Q
    ||||||||||||||||||||  || || | || ||||  ||||||||||||||   || |||||||||||||| | || |||||| | ||||||||||||    
T  30516889 gctagcggcagtctactacactggggggaaacaaccccatctgtttaggattcacaacgatgtcaccctctccaggctaaaggatcagctggatcaaatc 30516988  T
Q  123 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 220  Q
    ||| | ||||| ||||||| ||||| |||||||||||   | ||||||||| |||||   || ||| ||||||    ||||||||| |||||||||||    
T  30516989 aactgccaactcaaccacagagacacgaggagggtggtatgtgttgaatatcgatgtttgttgtccaactcagtttcatctcttcggttcagccggat 30517086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 184
Target Start/End: Complemental strand, 15500019 - 15499935
Alignment:
Q  100 tgaaggatgatctggatcaaatcaaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccatt 184  Q
    |||||||| | ||| ||||||||||||||||||| |||||||||||||  |||||||||||| | ||||| ||| || |||||||    
T  15500019 tgaaggattagctgcatcaaatcaaccgtcaactcaaccacaaagacactaggagggtggacggtgttgagtatcgacgtccatt 15499935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 22334148 - 22334205
Alignment:
Q  163 gagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 220  Q
    ||||||||||| ||||||| || |||||||||  |||||||||||||||||| |||||    
T  22334148 gagttgaatatcgatgtccgttgtccgactcaatcggatctcttcgcttcagtcggat 22334205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 136; Significance: 5e-71; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 25 - 220
Target Start/End: Original strand, 3940001 - 3940196
Alignment:
Q  25 tagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaa 124  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||    
T  3940001 tagcggcagtctactacaacggtggaacaccaccccatctgtttaggattcgagacgatatcaccctctccggactgaaggatgagctggatcaaatcaa 3940100  T
Q  125 ccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 220  Q
    ||||||||  ||||||||||||| ||||||||||| ||||||||||||| || ||||||| |||||||||| ||||||||||| |||| |||||||    
T  3940101 ccgtcaacacaaccacaaagacacgaggagggtggtcagagttgaatatcgacgtccattgtccgactcagtcggatctcttcacttcggccggat 3940196  T

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Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 23 - 220
Target Start/End: Original strand, 44206261 - 44206458
Alignment:
Q  23 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 122  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||  ||||||||||| ||||||||||||    
T  44206261 gctagcggcagtctactacaacggtggaacaccaccccatctgtttaggattcgagacgatgtcaccctctccgagctgaaggatgagctggatcaaatc 44206360  T
Q  123 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 220  Q
    |||  |||||| ||||||||||||| ||||||||||| | ||||||||||| ||||||| || || |||||| |||||||||||||||||||||||||    
T  44206361 aacaatcaactaaaccacaaagacacgaggagggtggtcggagttgaatatcgatgtccgttgtctgactcaaccggatctcttcgcttcagccggat 44206458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 25 - 220
Target Start/End: Original strand, 21449215 - 21449409
Alignment:
Q  25 tagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaa 124  Q
    |||||||||||||||||||||||||| ||||||||  ||||||||||||||||||| ||||||||||||| |  |||||||||||  |||||||||||||    
T  21449215 tagcggcagtctactacaacggtgga-caccaccccatctgtttaggattcgagacgatgtcaccctctctgagctgaaggatgagatggatcaaatcaa 21449313  T
Q  125 ccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 220  Q
    ||| ||||| ||||||||||||| ||||||||||| | ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  21449314 ccgacaactcaaccacaaagacacgaggagggtggtcggagttgaatatcgatgtccattgtccgactcagccggatctcttcgcttcagccggat 21449409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 30 - 220
Target Start/End: Original strand, 41973187 - 41973377
Alignment:
Q  30 gcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtc 129  Q
    ||||||||||||||||||||||||||| |   |||||||| |||||||||| ||||| ||||||||||  |||||||||| |||||||||||||||||||    
T  41973187 gcagtctactacaacggtggaacaccatctcatctgtttaagattcgagacgatgtcgccctctccgggttgaaggatgagctggatcaaatcaaccgtc 41973286  T
Q  130 aacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 220  Q
    |||| ||||||||||||| |||||||||||   ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  41973287 aactcaaccacaaagacatgaggagggtggttggagttgaatatcgatgtccattgtccgactcagccggatctcttcgcttcagccggat 41973377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 23 - 216
Target Start/End: Original strand, 49325866 - 49326059
Alignment:
Q  23 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 122  Q
    |||||||||||| ||||||||||||||||||||||||  |||||||||||||| |||| |||||||||||||||  || |||||||| ||||||||||||    
T  49325866 gctagcggcagtatactacaacggtggaacaccaccccatctgtttaggattcaagacgatgtcaccctctccgagcttaaggatgagctggatcaaatc 49325965  T
Q  123 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagcc 216  Q
    ||||||||||| ||||||||||||| ||||||||||| | ||||||||||| ||||| | || ||||||||| |||||||||||||||||||||    
T  49325966 aaccgtcaactcaaccacaaagacacgaggagggtggtcggagttgaatatcgatgttcgttgtccgactcaaccggatctcttcgcttcagcc 49326059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 23 - 212
Target Start/End: Original strand, 47373320 - 47373508
Alignment:
Q  23 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 122  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||  |||||||||| ||||||||||||    
T  47373320 gctagcggcagtctactacaacggtggaacaccaccca-tctgtttaggattcgagacgatgtcaccctctccgggttgaaggatgagctggatcaaatc 47373418  T
Q  123 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttc 212  Q
    ||||||||||| ||||||||||||| ||||||||||| | ||||||||||| ||| || ||| ||||||| ||  |||||||||||||||    
T  47373419 aaccgtcaactcaaccacaaagacacgaggagggtggtcggagttgaatatcgatttctattgtccgacttagttggatctcttcgcttc 47373508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 23 - 220
Target Start/End: Original strand, 8484978 - 8485174
Alignment:
Q  23 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 122  Q
    |||||||||||||||||||||||||||||||| |||   ||||||||||||||||||| |||| ||||||||  | ||||||||||| ||||||||| ||    
T  8484978 gctagcggcagtctactacaacggtggaacacaaccaa-tctgtttaggattcgagacgatgttaccctctctaggctgaaggatgagctggatcaagtc 8485076  T
Q  123 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 220  Q
    ||||||||||| ||||||||||||| ||||||||||| | || ||||||||  ||||||||| |||||||||||||||||||||||||| ||||||||    
T  8485077 aaccgtcaactcaaccacaaagacacgaggagggtggtcggacttgaatataaatgtccattgtccgactcagccggatctcttcgctttagccggat 8485174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 34 - 220
Target Start/End: Complemental strand, 48063790 - 48063603
Alignment:
Q  34 tctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaact 133  Q
    ||||||||||||||||||||||| ||  ||||||||||||||||||| |||||||||||||||  ||||||||||| |||||||||||||||||||||||    
T  48063790 tctactacaacggtggaacaccatcccatctgtttaggattcgagacgatgtcaccctctccgagctgaaggatgagctggatcaaatcaaccgtcaact 48063691  T
Q  134 taaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactc-agccggatctcttcgcttcagccggat 220  Q
     ||||||||||||| ||||||||||  | ||||||||||| |||| || || |||||||| | |||||||||||||||||||||||||    
T  48063690 caaccacaaagacacgaggagggtgatcggagttgaatatcgatgcccgttgtccgactcaaaccggatctcttcgcttcagccggat 48063603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 23 - 214
Target Start/End: Original strand, 21978439 - 21978631
Alignment:
Q  23 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggat-tcgagacaatgtcaccctctccggactgaaggatgatctggatcaaat 121  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||| || | |  || |||||||||||||| |||| |||||||| |||||||||||    
T  21978439 gctagcggcagtcttctacaacggtggaacaccaccctatctgtttagaatattgcaacgatgtcaccctctcccgactaaaggatgagctggatcaaat 21978538  T
Q  122 caaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcag 214  Q
    |||||||||||| |||| || ||||| ||||||||||| | | ||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  21978539 caaccgtcaactcaaccgcagagacacgaggagggtggtcggtgttgaatatcgatgtccattgtccgactcagccggatctcttcgcttcag 21978631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 23 - 214
Target Start/End: Original strand, 22000870 - 22001062
Alignment:
Q  23 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggat-tcgagacaatgtcaccctctccggactgaaggatgatctggatcaaat 121  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||| || | |  || |||||||||||||| |||| |||||||| |||||||||||    
T  22000870 gctagcggcagtcttctacaacggtggaacaccaccctatctgtttagaatattgcaacgatgtcaccctctcccgactaaaggatgagctggatcaaat 22000969  T
Q  122 caaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcag 214  Q
    |||||||||||| |||| || ||||| ||||||||||| | | ||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  22000970 caaccgtcaactcaaccgcagagacacgaggagggtggtcggtgttgaatatcgatgtccattgtccgactcagccggatctcttcgcttcag 22001062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 23 - 208
Target Start/End: Complemental strand, 9332107 - 9331922
Alignment:
Q  23 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 122  Q
    |||||||| |||||||||||||||||||  |||||||  | |||||||||||||  || |||||||||||||||| ||||||||  | ||||||||||||    
T  9332107 gctagcggaagtctactacaacggtggagaaccaccccatttgtttaggattcgcaacgatgtcaccctctccgggctgaaggaccagctggatcaaatc 9332008  T
Q  123 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcg 208  Q
    ||||||||||| ||| ||| ||||| ||||||||||| | | ||||||||| |||||||||| ||||||||||||||||| |||||    
T  9332007 aaccgtcaactcaactacagagacacgaggagggtggtcggtgttgaatatcgatgtccattgtccgactcagccggatcacttcg 9331922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 213
Target Start/End: Complemental strand, 18877600 - 18877422
Alignment:
Q  23 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 122  Q
    ||||||||||||||||||||||||||||||| |||||  ||||||||||||| |  || || ||| ||||||| | || |||||||| ||||||||||||    
T  18877600 gctagcggcagtctactacaacggtggaacatcaccccatctgtttaggatttgcaacgatatcatcctctcccggctaaaggatgagctggatcaaatc 18877501  T
Q  123 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttca 213  Q
    |||||            || ||||| ||||||||||| | | ||| ||||| |||||||||| ||||||||||||||||| ||| ||||||    
T  18877500 aaccg------------cagagacacgaggagggtggtcggtgttaaatatcgatgtccattttccgactcagccggatcgctttgcttca 18877422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 22163054 - 22163104
Alignment:
Q  23 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggat 73  Q
    ||||||||||||||||||||| |||||||||||||||  ||||||||||||    
T  22163054 gctagcggcagtctactacaatggtggaacaccaccccatctgtttaggat 22163104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 133; Significance: 3e-69; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 24 - 220
Target Start/End: Original strand, 5462934 - 5463130
Alignment:
Q  24 ctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatca 123  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||| |||| |||||||||||||||| ||||||||||| ||||||| ||| |    
T  5462934 ctagcggcagtctactacaacggtggaacaccaccccatctgtttaggattctagacgatgtcaccctctccgggctgaaggatgagctggatcgaatta 5463033  T
Q  124 accgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 220  Q
    |||||||||| ||||||||||||| ||||||||||| | |||| |||||| |||||||||| ||||||||||||||| |||||||||||||||||||    
T  5463034 accgtcaactcaaccacaaagacacgaggagggtggtcggagtggaatatcgatgtccattgtccgactcagccggacctcttcgcttcagccggat 5463130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 23 - 217
Target Start/End: Original strand, 15111900 - 15112094
Alignment:
Q  23 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 122  Q
    |||||||| ||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||| |||||||||||  | |||||||||    
T  15111900 gctagcggtagtctactacaacggtggaacaccaccccatctgtttaggattcgagacgatgtcaccctctccgggctgaaggatgagttagatcaaatc 15111999  T
Q  123 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccg 217  Q
    ||| ||||||| ||||||| ||||| ||||||||||| ||||||| ||||||||||| |||| ||||||| | ||||||||||||||||||||||    
T  15112000 aactgtcaactcaaccacagagacacgaggagggtggtcagagtttaatattgatgttcattgtccgacttaaccggatctcttcgcttcagccg 15112094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 24 - 220
Target Start/End: Original strand, 5936891 - 5937087
Alignment:
Q  24 ctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatca 123  Q
    ||||||| ||||||||||||||||||||||||||||  ||||||||||||||   || |||||||||||||||| ||||||||||| |||||||||||||    
T  5936891 ctagcggtagtctactacaacggtggaacaccaccccatctgtttaggattcacaacgatgtcaccctctccgggctgaaggatgagctggatcaaatca 5936990  T
Q  124 accgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 220  Q
    | |||||||| ||||||| |  || ||||||| ||| | | ||||||||| |||||||||| ||||||||||||| |||||||||||||| ||||||    
T  5936991 atcgtcaactcaaccacagaagcacgaggaggttggtcggtgttgaatatcgatgtccattgtccgactcagccgaatctcttcgcttcaaccggat 5937087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 25 - 213
Target Start/End: Complemental strand, 18964909 - 18964721
Alignment:
Q  25 tagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaa 124  Q
    |||| ||||||||||||||||| |||| |||||||  ||||||||||||| | ||| ||||||||||||||||  ||||||||||  |||||||||||||    
T  18964909 tagctgcagtctactacaacgggggaaaaccacccaatctgtttaggatttgcgacgatgtcaccctctccgggatgaaggatgagttggatcaaatcaa 18964810  T
Q  125 ccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttca 213  Q
    ||||||||| ||||||||||||| |||||||||||     |||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  18964809 ccgtcaactcaaccacaaagacaggaggagggtggttgatgttgaatattgatgtccattgtccgactcagccggatctcttcgattca 18964721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 23 - 220
Target Start/End: Complemental strand, 34950077 - 34949880
Alignment:
Q  23 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 122  Q
    ||||||| ||||||||||||||||||||||| |||||  ||||||||||||| |  || || ||||| ||||||| ||||||||||| ||||||||||||    
T  34950077 gctagcgacagtctactacaacggtggaacatcaccccatctgtttaggatttgcaacgatctcaccttctccgggctgaaggatgagctggatcaaatc 34949978  T
Q  123 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 220  Q
    || |||||||| ||||||| ||||| ||| |||||||     ||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||    
T  34949977 aatcgtcaactcaaccacatagacacgagtagggtggttgttgttgaatatcgatgtccattgtccgactcaaccggatctcttcgcttcagccggat 34949880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 183
Target Start/End: Complemental strand, 33946344 - 33946243
Alignment:
Q  82 atgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtcc 181  Q
    |||||||||||||| || |||||| | | ||||||||||||||||| ||| | ||| |||||||||   |||||||||| || ||||| ||| |||||||    
T  33946344 atgtcaccctctccagattgaagggtcagctggatcaaatcaaccgccaattcaactacaaagacacacggagggtggatagtgttgagtatcgatgtcc 33946245  T
Q  182 at 183  Q
    ||    
T  33946244 at 33946243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 147
Target Start/End: Complemental strand, 2734688 - 2734623
Alignment:
Q  82 atgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaacttaaccacaaagaca 147  Q
    |||||||||||||| |  |||||| | | ||||||||||||||||||||||| ||| ||| |||||    
T  2734688 atgtcaccctctccaggttgaagggtcagctggatcaaatcaaccgtcaactcaactacagagaca 2734623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 196
Target Start/End: Complemental strand, 41255599 - 41255518
Alignment:
Q  115 atcaaatcaaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagc 196  Q
    ||||||||||||||||| | ||||||  |||||  ||||||||||| || ||||| ||| || |||||||  ||||||||||    
T  41255599 atcaaatcaaccgtcaaatgaaccacgtagacacaaggagggtggatagtgttgagtatcgacgtccattgaccgactcagc 41255518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 160
Target Start/End: Original strand, 42014750 - 42014798
Alignment:
Q  112 tggatcaaatcaaccgtcaacttaaccacaaagacaagaggagggtgga 160  Q
    |||||||||||||||||||||| | ||||| |||||  |||||||||||    
T  42014750 tggatcaaatcaaccgtcaactcacccacagagacacaaggagggtgga 42014798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 131; Significance: 4e-68; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 23 - 201
Target Start/End: Original strand, 24854467 - 24854645
Alignment:
Q  23 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 122  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||  ||||||||||| ||||||||||||    
T  24854467 gctagcggcagtctactacaacggtggaacaccaccccatctgtttaggattcgagacgatgtcaccctctccgagctgaaggatgagctggatcaaatc 24854566  T
Q  123 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggat 201  Q
    ||||||||||| ||||||||||||| ||||||||||| | ||||||||||| |||||||||| ||||||||||||||||    
T  24854567 aaccgtcaactcaaccacaaagacacgaggagggtggtcggagttgaatatcgatgtccattgtccgactcagccggat 24854645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 23 - 200
Target Start/End: Original strand, 6431185 - 6431362
Alignment:
Q  23 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 122  Q
    |||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||    
T  6431185 gctagcggcagtctactacaacggtggaacaccaccccatctatttaggattcgagacgatgtcaccctctccgggctgaaggatgagctggatcaaatc 6431284  T
Q  123 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccgga 200  Q
    ||||||||||| ||||||||||||| ||||||||||| |  |||||||||| |||||||||| |||||||||| ||||    
T  6431285 aaccgtcaactcaaccacaaagacacgaggagggtggtcgaagttgaatatcgatgtccattgtccgactcagtcgga 6431362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 23 - 217
Target Start/End: Original strand, 41614912 - 41615106
Alignment:
Q  23 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 122  Q
    |||||||||| ||||||||||||||||||||||||||  ||||||||||||||   || ||||||||||||||||  |||||||||| ||||||||||||    
T  41614912 gctagcggcaatctactacaacggtggaacaccaccccatctgtttaggattcacaacgatgtcaccctctccgggatgaaggatgagctggatcaaatc 41615011  T
Q  123 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccg 217  Q
    ||||||||||| |||||||||||||  |||||||||| | | ||||||||| ||||||||||  |||||||| ||||||||||||||||||||||    
T  41615012 aaccgtcaactcaaccacaaagacacaaggagggtggtcggtgttgaatatcgatgtccatttcccgactcaaccggatctcttcgcttcagccg 41615106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 23 - 209
Target Start/End: Original strand, 31470723 - 31470909
Alignment:
Q  23 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 122  Q
    |||| ||||||||| ||||||||||||||||||||||   ||||||||||||||  || |||||||||||||||  |||||||||||| |||||||||||    
T  31470723 gctatcggcagtcttctacaacggtggaacaccaccccaactgtttaggattcgcaacgatgtcaccctctccgagctgaaggatgatgtggatcaaatc 31470822  T
Q  123 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgc 209  Q
    ||||||||||| |||| |||||||| ||||||||||| | | | ||||||  |||||||||| ||||||||||||||||||||||||    
T  31470823 aaccgtcaactcaaccgcaaagacacgaggagggtggtcggtgatgaataccgatgtccattgtccgactcagccggatctcttcgc 31470909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 23 - 159
Target Start/End: Original strand, 5342631 - 5342767
Alignment:
Q  23 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 122  Q
    |||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||  |||||||||| ||||||||||||    
T  5342631 gctagcggcaatctactacaacggtggaacaccaccccctctgtttaggattcgagacgatgtcaccctctccgggttgaaggatgaactggatcaaatc 5342730  T
Q  123 aaccgtcaacttaaccacaaagacaagaggagggtgg 159  Q
    ||| ||||||| ||||||||||||| |||||||||||    
T  5342731 aactgtcaactcaaccacaaagacacgaggagggtgg 5342767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 24 - 201
Target Start/End: Complemental strand, 27950077 - 27949900
Alignment:
Q  24 ctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatca 123  Q
    |||||| || ||||||||||||  |||| |||||||  |||||||||||||||  || |||||||||| ||||  ||||||||| | |||||||||||||    
T  27950077 ctagcgacaatctactacaacgagggaaaaccaccccatctgtttaggattcgcaacgatgtcaccctttccgtgctgaaggatcagctggatcaaatca 27949978  T
Q  124 accgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggat 201  Q
    |||||||||| ||| ||| ||||| ||||| || || | | ||||||||| |||||||||| |||||||||| |||||    
T  27949977 accgtcaactcaactacagagacacgaggatggcggtcggtgttgaatatcgatgtccattgtccgactcagtcggat 27949900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 82 - 197
Target Start/End: Original strand, 10133541 - 10133656
Alignment:
Q  82 atgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtcc 181  Q
    |||||||| ||||| |  |||||||| | ||||||||||||||||| ||||| ||||||||||||| | |||||||||||   ||||| ||| ||  |||    
T  10133541 atgtcaccatctccaggttgaaggatcagctggatcaaatcaaccgccaactcaaccacaaagacacgcggagggtggacgatgttgagtatcgacatcc 10133640  T
Q  182 attatccgactcagcc 197  Q
    || | |||||||||||    
T  10133641 atcaaccgactcagcc 10133656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 82 - 160
Target Start/End: Original strand, 8241664 - 8241742
Alignment:
Q  82 atgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaacttaaccacaaagacaagaggagggtgga 160  Q
    |||||||||||| | |  |||||||| ||||||||||||||||||||||||| || |||| ||||| ||||| ||||||    
T  8241664 atgtcaccctctacaggttgaaggatcatctggatcaaatcaaccgtcaactcaatcacagagacacgaggatggtgga 8241742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 183
Target Start/End: Complemental strand, 28443775 - 28443674
Alignment:
Q  82 atgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtcc 181  Q
    |||||||| |||| ||  |||||||| | ||||||||||||||||  ||||| ||||||| ||||| | |||||||||||   ||||| ||| |||||||    
T  28443775 atgtcaccttctctgggttgaaggatcagctggatcaaatcaaccaccaactcaaccacagagacacgcggagggtggacgatgttgagtatcgatgtcc 28443676  T
Q  182 at 183  Q
    ||    
T  28443675 at 28443674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 128; Significance: 3e-66; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 23 - 206
Target Start/End: Complemental strand, 24832327 - 24832144
Alignment:
Q  23 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 122  Q
    ||||| || ||||||||||||| |||||||| |||||  |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  24832327 gctagaggtagtctactacaacagtggaacagcaccccatctgtttaggattcgagacaatgtcaccctctccgggctgaaggatgagctggatcaaatc 24832228  T
Q  123 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctctt 206  Q
    ||||||||||| ||||||||||||| ||||||||||| | ||||||||||| |||||||||| |||||||||||||||||||||    
T  24832227 aaccgtcaactcaaccacaaagacatgaggagggtggtcggagttgaatatcgatgtccattgtccgactcagccggatctctt 24832144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 30 - 216
Target Start/End: Original strand, 10292 - 10478
Alignment:
Q  30 gcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtc 129  Q
    ||||||||||||||||||||||||||||||  ||| ||| ||||||||||| |||||||||||||||  ||||||||||| |||||||||||||||| ||    
T  10292 gcagtctactacaacggtggaacaccaccccatctattttggattcgagacgatgtcaccctctccgagctgaaggatgagctggatcaaatcaaccatc 10391  T
Q  130 aacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagcc 216  Q
    |||| ||||||||||||| ||||||||||| | ||||||||||| ||||||  || |||||||||  || |||||||||||||||||    
T  10392 aactcaaccacaaagacacgaggagggtggtcggagttgaatatcgatgtctgttgtccgactcaatcgtatctcttcgcttcagcc 10478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 83 - 220
Target Start/End: Complemental strand, 41836194 - 41836057
Alignment:
Q  83 tgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtcca 182  Q
    ||||||||||| ||| ||||||||||| ||||||||||||||| ||||||| ||||||| ||||| ||||||||||| | | ||||||||| ||  ||||    
T  41836194 tgtcaccctcttcgggctgaaggatgagctggatcaaatcaactgtcaactcaaccacagagacatgaggagggtggtcggtgttgaatatcgaattcca 41836095  T
Q  183 ttatccgactcagccggatctcttcgcttcagccggat 220  Q
    || ||||| |||||| ||||||| ||||||||||||||    
T  41836094 ttgtccgaatcagccagatctctacgcttcagccggat 41836057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 82 - 183
Target Start/End: Original strand, 16796064 - 16796165
Alignment:
Q  82 atgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtcc 181  Q
    |||||||||||||||   |||||||| | ||||||||||||||| ||||||| ||||||| ||||| ||||||||||||| | ||||| |||||| ||||    
T  16796064 atgtcaccctctccgagttgaaggattagctggatcaaatcaactgtcaactcaaccacagagacatgaggagggtggacggtgttgagtattgacgtcc 16796163  T
Q  182 at 183  Q
    ||    
T  16796164 at 16796165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 161
Target Start/End: Complemental strand, 12191461 - 12191382
Alignment:
Q  82 atgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaacttaaccacaaagacaagaggagggtggac 161  Q
    |||||||| |||||||  | || ||| | ||||||||||||||||||||| | |||||||||||||  ||||||||||||    
T  12191461 atgtcaccttctccgggttaaatgatcagctggatcaaatcaaccgtcaattcaaccacaaagacacaaggagggtggac 12191382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 161
Target Start/End: Complemental strand, 12435889 - 12435810
Alignment:
Q  82 atgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaacttaaccacaaagacaagaggagggtggac 161  Q
    |||||||| |||||||  | || ||| | ||||||||||||||||||||| | |||||||||||||  ||||||||||||    
T  12435889 atgtcaccttctccgggttaaatgatcagctggatcaaatcaaccgtcaattcaaccacaaagacacaaggagggtggac 12435810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 23 - 220
Target Start/End: Complemental strand, 17075 - 16878
Alignment:
Q  23 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 122  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||| || |||||||| ||||||||||||    
T  17075 gctagcggcagtctactacaacggtggaacaccaccccatctgtttaggattcgagacgatgtcaccctctccgggctaaaggatgagctggatcaaatc 16976  T
Q  123 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 220  Q
    |||| |||||| ||||||||||||| ||||||||||| | ||||||||||| |||||||||| | | ||||| ||| ||||||| |||||||| ||||    
T  16975 aaccttcaactcaaccacaaagacacgaggagggtggtcggagttgaatatcgatgtccattgtgcaactcaaccgaatctctttgcttcagctggat 16878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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