View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6962_low_47 (Length: 233)
Name: NF6962_low_47
Description: NF6962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6962_low_47 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 128 - 218
Target Start/End: Original strand, 1770546 - 1770636
Alignment:
| Q |
128 |
ctatgtcattcctcaaaagatgccagaaagaccgaatgaatgaaagaaaaatctaaatgttttagtatgtttcctatatttaggtttaaaa |
218 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1770546 |
ctatgtcattcctcaaaagatgtcaaaaagaccgaatgaatgaaagaaaaatctaaatgttttagtatgtttcctatatttaagtttaaaa |
1770636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 1770405 - 1770449
Alignment:
| Q |
14 |
aatataaatggccccgtatgaaaaagaaggaatcatttgaataatt |
59 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
1770405 |
aatataaatggccccgtatgaaaaagaa-gaatcatttgaataatt |
1770449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University