View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6962_low_48 (Length: 227)
Name: NF6962_low_48
Description: NF6962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6962_low_48 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 46293970 - 46293759
Alignment:
| Q |
1 |
ctgcatggtgcccaaaacacacaaacaaattaaccgaacaacataacttcctgagaataattgggagagtcataccaatattgttagtaaaatccttagg |
100 |
Q |
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| T |
46293970 |
ctgcatggtgcccagaacacacaaacaaattaactgaacaccgtaacttcctgagaataattggaagagtcataccaatattgttagtaaaatccttagg |
46293871 |
T |
|
| Q |
101 |
ttaagaagagacagagtcgacatacgggaaagggcaacaacaaaatgcaaacaccaacaccacacttggacaacacgcatacgagaaaaagaccatgcat |
200 |
Q |
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| T |
46293870 |
ttaagaagagacagagtcgacgtacggaaaagggcaacaacaaaatgcaaacaccaacaccacacttggacaacacgcatacgagaaaaagaccatgcat |
46293771 |
T |
|
| Q |
201 |
ccaacctttgat |
212 |
Q |
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|||||||||||| |
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| T |
46293770 |
ccaacctttgat |
46293759 |
T |
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