View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6962_low_5 (Length: 572)

Name: NF6962_low_5
Description: NF6962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6962_low_5
NF6962_low_5
[»] chr8 (22 HSPs)
chr8 (381-559)||(22846787-22846963)
chr8 (18-161)||(22846300-22846428)
chr8 (205-368)||(22651944-22652107)
chr8 (205-351)||(15816057-15816203)
chr8 (207-344)||(29447040-29447177)
chr8 (205-300)||(21465448-21465543)
chr8 (206-369)||(29510233-29510396)
chr8 (209-312)||(24727684-24727787)
chr8 (206-372)||(22197671-22197837)
chr8 (251-372)||(2572030-2572151)
chr8 (207-308)||(12402616-12402722)
chr8 (265-369)||(13436952-13437056)
chr8 (210-312)||(25172631-25172733)
chr8 (207-288)||(24205749-24205830)
chr8 (225-306)||(29655926-29656007)
chr8 (206-310)||(29447470-29447574)
chr8 (205-308)||(4122177-4122280)
chr8 (206-299)||(27067231-27067322)
chr8 (206-299)||(11944702-11944795)
chr8 (245-282)||(34451000-34451037)
chr8 (278-310)||(4298887-4298919)
chr8 (206-310)||(26902104-26902208)
[»] scaffold0003 (1 HSPs)
scaffold0003 (206-382)||(241548-241724)
[»] chr6 (28 HSPs)
chr6 (205-372)||(16766661-16766828)
chr6 (206-371)||(8365448-8365613)
chr6 (277-380)||(34595090-34595193)
chr6 (205-363)||(17435172-17435330)
chr6 (273-380)||(10770670-10770776)
chr6 (206-372)||(9107299-9107465)
chr6 (206-277)||(33001229-33001300)
chr6 (277-372)||(7977830-7977925)
chr6 (277-372)||(8776973-8777068)
chr6 (206-312)||(25038000-25038106)
chr6 (278-372)||(7938080-7938174)
chr6 (244-363)||(12696297-12696410)
chr6 (206-288)||(3209436-3209518)
chr6 (208-310)||(4118264-4118366)
chr6 (259-365)||(6349719-6349825)
chr6 (262-310)||(785440-785488)
chr6 (320-368)||(19044432-19044480)
chr6 (257-301)||(22745992-22746036)
chr6 (206-277)||(28152146-28152217)
chr6 (256-310)||(5970087-5970141)
chr6 (256-310)||(8714006-8714060)
chr6 (244-310)||(9522917-9522983)
chr6 (249-299)||(16488562-16488612)
chr6 (267-309)||(20576623-20576665)
chr6 (273-311)||(21395304-21395342)
chr6 (251-308)||(11424685-11424742)
chr6 (332-372)||(5732565-5732605)
chr6 (206-270)||(17327590-17327654)
[»] chr7 (25 HSPs)
chr7 (206-371)||(24339607-24339772)
chr7 (273-371)||(27945006-27945104)
chr7 (206-368)||(5409771-5409927)
chr7 (206-310)||(6028651-6028755)
chr7 (230-371)||(7438671-7438812)
chr7 (211-370)||(13770657-13770810)
chr7 (223-310)||(21560529-21560616)
chr7 (206-308)||(11831460-11831562)
chr7 (277-372)||(25481866-25481961)
chr7 (245-310)||(2334276-2334340)
chr7 (244-352)||(11665407-11665515)
chr7 (206-277)||(21880200-21880271)
chr7 (208-310)||(9408265-9408367)
chr7 (278-372)||(11061077-11061171)
chr7 (246-299)||(25822692-25822745)
chr7 (205-277)||(598256-598328)
chr7 (260-312)||(8160440-8160492)
chr7 (332-379)||(43249950-43249997)
chr7 (256-310)||(43243103-43243157)
chr7 (332-373)||(1433417-1433458)
chr7 (206-255)||(4017729-4017777)
chr7 (270-299)||(7058463-7058492)
chr7 (207-311)||(4794914-4795018)
chr7 (260-308)||(11272569-11272617)
chr7 (332-376)||(11722153-11722197)
[»] chr3 (18 HSPs)
chr3 (206-380)||(41961579-41961753)
chr3 (205-372)||(15796222-15796389)
chr3 (206-344)||(14209105-14209243)
chr3 (277-371)||(55401040-55401134)
chr3 (208-345)||(4987222-4987359)
chr3 (251-372)||(750592-750714)
chr3 (206-299)||(34185052-34185145)
chr3 (277-372)||(10335286-10335381)
chr3 (230-310)||(14832125-14832205)
chr3 (244-368)||(25064877-25064999)
chr3 (207-358)||(14216870-14217021)
chr3 (207-358)||(14222999-14223150)
chr3 (277-372)||(16000016-16000111)
chr3 (320-369)||(35994780-35994829)
chr3 (273-310)||(39756262-39756299)
chr3 (332-372)||(8383221-8383261)
chr3 (230-306)||(11665974-11666050)
chr3 (332-372)||(24205096-24205136)
[»] chr1 (24 HSPs)
chr1 (205-350)||(32461392-32461536)
chr1 (229-372)||(6612123-6612266)
chr1 (206-356)||(18556385-18556535)
chr1 (206-372)||(47989462-47989627)
chr1 (206-310)||(5944309-5944413)
chr1 (206-380)||(40917707-40917879)
chr1 (206-310)||(6427490-6427594)
chr1 (206-310)||(31694639-31694743)
chr1 (208-299)||(17778583-17778670)
chr1 (206-299)||(25934653-25934746)
chr1 (208-277)||(29163323-29163392)
chr1 (244-308)||(9629867-9629931)
chr1 (266-310)||(48547974-48548018)
chr1 (260-364)||(5376483-5376587)
chr1 (320-371)||(10572632-10572683)
chr1 (249-308)||(28273060-28273119)
chr1 (206-312)||(12993218-12993324)
chr1 (206-264)||(17408763-17408821)
chr1 (273-310)||(2218265-2218302)
chr1 (206-344)||(9828036-9828174)
chr1 (277-371)||(39130767-39130861)
chr1 (206-310)||(16164244-16164348)
chr1 (270-310)||(26526749-26526789)
chr1 (331-371)||(48040516-48040556)
[»] chr5 (22 HSPs)
chr5 (244-372)||(21541994-21542122)
chr5 (205-372)||(21522714-21522881)
chr5 (205-372)||(21533280-21533447)
chr5 (206-306)||(32766872-32766972)
chr5 (208-368)||(19579669-19579829)
chr5 (205-277)||(21576684-21576756)
chr5 (206-310)||(39698567-39698671)
chr5 (246-312)||(18592097-18592163)
chr5 (292-371)||(22013379-22013458)
chr5 (205-310)||(41091185-41091290)
chr5 (207-299)||(6401535-6401627)
chr5 (320-372)||(15382441-15382493)
chr5 (340-384)||(36640139-36640183)
chr5 (333-380)||(21137645-21137692)
chr5 (321-372)||(41995435-41995486)
chr5 (249-299)||(21814298-21814348)
chr5 (259-308)||(8044262-8044311)
chr5 (207-284)||(18316856-18316933)
chr5 (320-369)||(22299523-22299572)
chr5 (320-380)||(4105213-4105273)
chr5 (206-270)||(27932290-27932354)
chr5 (206-310)||(30098352-30098456)
[»] chr4 (23 HSPs)
chr4 (206-368)||(19482636-19482798)
chr4 (206-344)||(24613630-24613768)
chr4 (226-372)||(27706126-27706272)
chr4 (254-312)||(51701282-51701340)
chr4 (206-310)||(22234819-22234923)
chr4 (207-299)||(30982808-30982900)
chr4 (277-381)||(21945458-21945562)
chr4 (206-269)||(35161092-35161155)
chr4 (277-372)||(23292986-23293081)
chr4 (277-371)||(12895274-12895368)
chr4 (278-372)||(35157986-35158080)
chr4 (277-358)||(2361975-2362056)
chr4 (320-384)||(49430978-49431041)
chr4 (208-299)||(19312372-19312463)
chr4 (206-277)||(23292926-23292997)
chr4 (206-277)||(34306744-34306815)
chr4 (229-283)||(15724506-15724560)
chr4 (206-271)||(5654503-5654568)
chr4 (208-308)||(28000672-28000773)
chr4 (243-308)||(30838238-30838303)
chr4 (341-373)||(5111608-5111640)
chr4 (254-310)||(13134476-13134532)
chr4 (278-310)||(44362692-44362724)
[»] chr2 (19 HSPs)
chr2 (206-310)||(11223793-11223896)
chr2 (205-308)||(35056896-35056999)
chr2 (205-310)||(30717458-30717563)
chr2 (251-372)||(15657828-15657949)
chr2 (278-380)||(18841014-18841115)
chr2 (206-299)||(26769548-26769641)
chr2 (206-299)||(37419780-37419873)
chr2 (320-371)||(19536441-19536492)
chr2 (277-368)||(15972841-15972932)
chr2 (277-368)||(18421931-18422022)
chr2 (245-372)||(34784950-34785077)
chr2 (245-283)||(36096343-36096381)
chr2 (250-299)||(18054776-18054825)
chr2 (285-360)||(6940231-6940306)
chr2 (206-255)||(10535685-10535734)
chr2 (253-310)||(24067279-24067336)
chr2 (332-369)||(31018557-31018594)
chr2 (331-372)||(34337230-34337271)
chr2 (205-269)||(30404789-30404853)
[»] scaffold0223 (1 HSPs)
scaffold0223 (272-371)||(20137-20236)
[»] scaffold0086 (1 HSPs)
scaffold0086 (204-310)||(2954-3060)
[»] scaffold0623 (1 HSPs)
scaffold0623 (245-299)||(5964-6018)
[»] scaffold0053 (1 HSPs)
scaffold0053 (277-372)||(8762-8857)
[»] scaffold0050 (1 HSPs)
scaffold0050 (209-277)||(70326-70394)
[»] scaffold0018 (1 HSPs)
scaffold0018 (320-368)||(178862-178910)
[»] scaffold0306 (1 HSPs)
scaffold0306 (320-371)||(13365-13416)
[»] scaffold0152 (1 HSPs)
scaffold0152 (320-371)||(21911-21962)
[»] scaffold0039 (1 HSPs)
scaffold0039 (229-283)||(84925-84979)
[»] scaffold0116 (1 HSPs)
scaffold0116 (331-372)||(9862-9903)
[»] scaffold0019 (1 HSPs)
scaffold0019 (206-299)||(71762-71855)
[»] scaffold0007 (1 HSPs)
scaffold0007 (331-372)||(225322-225363)
[»] scaffold0136 (1 HSPs)
scaffold0136 (246-310)||(3818-3882)
[»] scaffold0122 (1 HSPs)
scaffold0122 (332-372)||(8630-8670)


Alignment Details
Target: chr8 (Bit Score: 140; Significance: 5e-73; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 381 - 559
Target Start/End: Original strand, 22846787 - 22846963
Alignment:
Q  381 atgtaacgtaatttttaatacgcaaagatgttatggctaaccaccttaattcttcatttcatgcatgctaaaataggctgcaggagcatgttggtactta 480  Q
    ||||||| ||||||||||| |||||| ||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  22846787 atgtaacataatttttaattcgcaaaaatgtta--gctaaccaccttaattcttcatttcatgcatactaaaataggctgcaggggcatgttggtactta 22846884  T
Q  481 ttggggatccaaagagcatccaaatgtctcaaagagcaatgttataaaacaaatggttgtggcattaatctcctttctt 559  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  22846885 ttggggatccaaagagcatccaaatgtctgaaagagcaatgttataaaacaaatggttgtggcatgaatctcctttctt 22846963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 22846300 - 22846428
Alignment:
Q  18 aggagtaggacaagagtattacgaactaagttaaacacaatggtgaaaactaacacaattttcaataataacaaattgaaaaatcaatctaactagagaa 117  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||               ||||||||||||||||||||||||||||||    
T  22846300 aggagtaggacaacagtattacgaactaagttcaacacaatggtgaaaactaaca---------------acaaattgaaaaatcaatctaactagagaa 22846384  T
Q  118 acaccatccaattctatgaactatagaaacaaaactagttctac 161  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  22846385 acaccatccaattctatgaactatagaaacaaaattagttctac 22846428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 205 - 368
Target Start/End: Complemental strand, 22652107 - 22651944
Alignment:
Q  205 gctatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaa 304  Q
    ||||||||||||| |||||  || |||||| ||| | | |||||| ||||| |||||||| ||||| |||||||||||| ||||||||||||| ||| ||    
T  22652107 gctatgaagcacggacactcctcggattagacgtgtcccggtgtcggacacatgtcgtgtccgacaccgacacgacaccgacacttgtaattatattgaa 22652008  T
Q  305 ttatgtaannnnnnnaaattagtagttgtgtcggcgtgtcaatgtccatgtcgtatccggtgtc 368  Q
    |||||| |       |||||| ||| ||||||||||||||| ||||| |||||| |||||||||    
T  22652007 ttatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtc 22651944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 205 - 351
Target Start/End: Original strand, 15816057 - 15816203
Alignment:
Q  205 gctatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaa 304  Q
    ||||||||||||| |||||| || |||||||||| | | |||||| ||  |||||||||| ||||| | |||||||||| |||||| |||||||| ||||    
T  15816057 gctatgaagcacggacacttctcggattaggcgtgtcccggtgtcggattcgtgtcgtgtccgacaccaacacgacaccgacacttataattacactaaa 15816156  T
Q  305 ttatgtaannnnnnnaaattagtagttgtgtcggcgtgtcaatgtcc 351  Q
    |||||| |       |||||| ||||||||||||||||||| |||||    
T  15816157 ttatgtgattttttcaaattattagttgtgtcggcgtgtcagtgtcc 15816203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 207 - 344
Target Start/End: Original strand, 29447040 - 29447177
Alignment:
Q  207 tatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaatt 306  Q
    ||||||||||| |||||  |  |||||||||| | |||||||||||||| |||||||| ||||| ||||| |||||| ||||||||| ||||||| ||||    
T  29447040 tatgaagcacggacactcctaggattaggcgtgtcctggtgtcagacacatgtcgtgtccgacaccgacatgacaccgacacttgtagttacattgaatt 29447139  T
Q  307 atgtaannnnnnnaaattagtagttgtgtcggcgtgtc 344  Q
    |||| |       |||||| ||||||||||| ||||||    
T  29447140 atgtgattttctcaaattattagttgtgtcgacgtgtc 29447177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 205 - 300
Target Start/End: Complemental strand, 21465543 - 21465448
Alignment:
Q  205 gctatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacat 300  Q
    ||||||||||||| |||||  ||| ||||||||||| |  ||||  |||||||||||||| |||||  ||||||||||||||||||||||||||||    
T  21465543 gctatgaagcacggacactcctcaaattaggcgtatccctgtgttggacacgtgtcgtgtccgacactgacacgacaccaacacttgtaattacat 21465448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 206 - 369
Target Start/End: Original strand, 29510233 - 29510396
Alignment:
Q  206 ctatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaat 305  Q
    |||||||||||| |||||  || ||||||| || | | |||||| |||||| ||||||| ||||| |||||| ||||| ||||||||||||| | | |||    
T  29510233 ctatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacacgcgtcgtgtccgacaccgacactacaccgacacttgtaattatactgaat 29510332  T
Q  306 tatgtaannnnnnnaaattagtagttgtgtcggcgtgtcaatgtccatgtcgtatccggtgtcc 369  Q
    | ||| |       |||||| ||| ||||||||||||||| ||||| |||||| ||||||||||    
T  29510333 tttgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtcc 29510396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 209 - 312
Target Start/End: Original strand, 24727684 - 24727787
Alignment:
Q  209 tgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaattat 308  Q
    |||||||||||||||| || |||||||||| ||||||| |  |||||||||| ||||||| | ||||| ||||| |||||||| ||||||| |  |||||    
T  24727684 tgaagcacgaacacttctcggattaggcgtgttctggtattggacacgtgtcatgttcgataccgacatgacactaacacttgaaattacactgcattat 24727783  T
Q  309 gtaa 312  Q
    ||||    
T  24727784 gtaa 24727787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 206 - 372
Target Start/End: Original strand, 22197671 - 22197837
Alignment:
Q  206 ctatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacac-gacaccaacacttgtaattacattaaa 304  Q
    |||| ||||||| |||||  |||||||||||||  || |||||| |||||||||| ||| ||||| |||||| |||||  ||||||||||||||| ||||    
T  22197671 ctataaagcacggacactcctcagattaggcgtgatccggtgtcggacacgtgtcatgtccgaca-cgacactgacactgacacttgtaattacactaaa 22197769  T
Q  305 ttatgtaannnnnnnaaattagtagttgtgtcggcgtgtcaatgtccatgtcgtatccggtgtccgtg 372  Q
    |||||| |       |||||| ||| ||||| ||||||| | ||||  |||||| |||||||||||||    
T  22197770 ttatgtgaatttttcaaattattagctgtgttggcgtgttagtgtctgtgtcgtgtccggtgtccgtg 22197837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 251 - 372
Target Start/End: Original strand, 2572030 - 2572151
Alignment:
Q  251 gacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaattatgtaannnnnnnaaattagtagttgtgtcggcgtgtcaatgtc 350  Q
    |||||||||||||| |||||  ||||||||||| ||||||||||||||| |||||||||| |       |||||| ||| ||||||| ||||||  | ||    
T  2572030 gacacgtgtcgtgtccgacacagacacgacaccgacacttgtaattacactaaattatgtgattttttcaaattattaggtgtgtcgacgtgtcggtatc 2572129  T
Q  351 catgtcgtatccggtgtccgtg 372  Q
    | |||||| ||| |||||||||    
T  2572130 cgtgtcgtgtccagtgtccgtg 2572151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 207 - 308
Target Start/End: Original strand, 12402616 - 12402722
Alignment:
Q  207 tatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacat-----cgacacgacaccaacacttgtaattacatt 301  Q
    ||||||||||||||||| |||| ||||  ||| ||| |||||| | || |||| |||||||||||     ||||||||||||||||| | ||||||||||    
T  12402616 tatgaagcacgaacactcttcaaattatacgtgttccggtgtcgggcatgtgttgtgttcgacatcgacacgacacgacaccaacacatataattacatt 12402715  T
Q  302 aaattat 308  Q
    |||||||    
T  12402716 aaattat 12402722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 265 - 369
Target Start/End: Original strand, 13436952 - 13437056
Alignment:
Q  265 tcgacatcgacacgacaccaacacttgtaattacattaaattatgtaannnnnnnaaattagtagttgtgtcggcgtgtcaatgtccatgtcgtatccgg 364  Q
    |||||| |||||||||||| |||||||| |||||  | |||||||| |       |||||| ||| ||||||||||||||| |||||||||| | |||||    
T  13436952 tcgacaccgacacgacaccgacacttgttattaccatgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccatgtcatgtccgg 13437051  T
Q  365 tgtcc 369  Q
    |||||    
T  13437052 tgtcc 13437056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 312
Target Start/End: Original strand, 25172631 - 25172733
Alignment:
Q  210 gaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaattatg 309  Q
    |||||||  ||||| ||| |||||| ||| |||| ||||  || |||| |||||| |||||| ||||||||||| |||| | ||||||||||||| ||||    
T  25172631 gaagcactgacactcttcggattagacgtgttctagtgtttgatacgtatcgtgtccgacattgacacgacaccgacacatataattacattaaaatatg 25172730  T
Q  310 taa 312  Q
    |||    
T  25172731 taa 25172733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 207 - 288
Target Start/End: Original strand, 24205749 - 24205830
Alignment:
Q  207 tatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacac 288  Q
    |||||| |||| |||||  || |||||||||| ||| ||||||||||| | || |||||||||| |||||| ||||||||||    
T  24205749 tatgaaacacggacactcctcggattaggcgtgttccggtgtcagacatgcgttgtgttcgacaccgacacaacaccaacac 24205830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 225 - 306
Target Start/End: Original strand, 29655926 - 29656007
Alignment:
Q  225 ttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaatt 306  Q
    |||||||||||||| ||  ||||||||| | |||| |||| |||||  |||||||| || ||||||||||||| ||||||||    
T  29655926 ttcagattaggcgtgtttcggtgtcagatatgtgttgtgtccgacactgacacgacgcctacacttgtaattatattaaatt 29656007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 206 - 310
Target Start/End: Complemental strand, 29447574 - 29447470
Alignment:
Q  206 ctatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaat 305  Q
    |||||||||||| |||||  || |||||| | | | | |||||| ||||| ||||||||  |||| ||||||||||||||||| | |||||||| | |||    
T  29447574 ctatgaagcacggacactcctccgattagacctgtcccggtgtcggacacatgtcgtgtctgacaccgacacgacaccaacacatataattacacttaat 29447475  T
Q  306 tatgt 310  Q
    |||||    
T  29447474 tatgt 29447470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 308
Target Start/End: Original strand, 4122177 - 4122280
Alignment:
Q  205 gctatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaa 304  Q
    |||| |||||||| ||||| ||  |||||| ||| ||| ||||||  |||||||||||||| ||||| ||||| ||||| |||| | |||||||| | ||    
T  4122177 gctacgaagcacggacactctttggattagacgtgttccggtgtccaacacgtgtcgtgtttgacattgacacaacaccgacacatataattacaatgaa 4122276  T
Q  305 ttat 308  Q
    ||||    
T  4122277 ttat 4122280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 299
Target Start/End: Original strand, 27067231 - 27067322
Alignment:
Q  206 ctatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattaca 299  Q
    |||||||||||| |||||  || |||||| |||  || |||||  ||||| |||||||| ||||| |||||||||||  |||||||||||||||    
T  27067231 ctatgaagcacggacactcctcggattagacgt--tccggtgttcgacacatgtcgtgtccgacaccgacacgacactgacacttgtaattaca 27067322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 299
Target Start/End: Complemental strand, 11944795 - 11944702
Alignment:
Q  206 ctatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattaca 299  Q
    ||||||||||||||||||  || |||||||||| |   |||||| || || ||||||||  |||||| |||||||||| |||| | ||||||||    
T  11944795 ctatgaagcacgaacactcatcggattaggcgtgtctcggtgtcggatacatgtcgtgtatgacatcaacacgacaccgacacatataattaca 11944702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 282
Target Start/End: Original strand, 34451000 - 34451037
Alignment:
Q  245 gtgtcagacacgtgtcgtgttcgacatcgacacgacac 282  Q
    |||||||||||||||||||| ||||| |||||||||||    
T  34451000 gtgtcagacacgtgtcgtgtccgacaccgacacgacac 34451037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 278 - 310
Target Start/End: Original strand, 4298887 - 4298919
Alignment:
Q  278 gacaccaacacttgtaattacattaaattatgt 310  Q
    |||||| ||||||||||||||||||||||||||    
T  4298887 gacaccgacacttgtaattacattaaattatgt 4298919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 206 - 310
Target Start/End: Original strand, 26902104 - 26902208
Alignment:
Q  206 ctatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaat 305  Q
    |||||||||||| |||||  |||||| |||||| | |  ||| |||||||||||||||| |||||   | |||||||| |||| | |||||||| | |||    
T  26902104 ctatgaagcacggacactcctcagataaggcgtgtccccgtgccagacacgtgtcgtgtccgacactcatacgacaccgacacatataattacactgaat 26902203  T
Q  306 tatgt 310  Q
    |||||    
T  26902204 tatgt 26902208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 76; Significance: 7e-35; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 206 - 382
Target Start/End: Complemental strand, 241724 - 241548
Alignment:
Q  206 ctatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaat 305  Q
    |||||||||||| |||||| || |||||||||| | | |||||| |||||||||||||| ||||| | |||||||||| |||||  |||||||| |||||    
T  241724 ctatgaagcacggacacttctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacaccaacacgacaccgacactcataattacactaaat 241625  T
Q  306 tatgtaannnnnnnaaattagtagttgtgtcggcgtgtcaatgtccatgtcgtatccggtgtccgtgcttcatagat 382  Q
    ||||| |       |||||| ||| ||||||||||||||| ||||| |||||| |||||||||||||||||||||||    
T  241624 tatgtgatttttccaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgcttcatagat 241548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 7e-32; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 205 - 372
Target Start/End: Complemental strand, 16766828 - 16766661
Alignment:
Q  205 gctatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaa 304  Q
    ||||||||||||| ||| | ||| |||||||||| | | |||||| ||||||||| |||| ||||| |||||||||||| ||||||||||||||| | ||    
T  16766828 gctatgaagcacggacattcttcggattaggcgtgtcccggtgtcggacacgtgttgtgtccgacaccgacacgacaccgacacttgtaattacactgaa 16766729  T
Q  305 ttatgtaannnnnnnaaattagtagttgtgtcggcgtgtcaatgtccatgtcgtatccggtgtccgtg 372  Q
    |||||| |       |||||| ||| ||||||||||||||| |||||||||||| |||||||||||||    
T  16766728 ttatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccatgtcgtgtccggtgtccgtg 16766661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 206 - 371
Target Start/End: Original strand, 8365448 - 8365613
Alignment:
Q  206 ctatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaat 305  Q
    |||||||||||| | |||  || |||||||||| | |  ||||| |||||||||||||| ||| | |||||||||||| |||||||||||||||   |||    
T  8365448 ctatgaagcacggagactcctcggattaggcgtgtcccagtgtcggacacgtgtcgtgtccgataccgacacgacaccgacacttgtaattacaccgaat 8365547  T
Q  306 tatgtaannnnnnnaaattagtagttgtgtcggcgtgtcaatgtccatgtcgtatccggtgtccgt 371  Q
    ||||| |       |||||| ||||||||||||||||||| ||||| |||||| || |||||||||    
T  8365548 tatgtgatattttcaaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtctggtgtccgt 8365613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 277 - 380
Target Start/End: Complemental strand, 34595193 - 34595090
Alignment:
Q  277 cgacaccaacacttgtaattacattaaattatgtaannnnnnnaaattagtagttgtgtcggcgtgtcaatgtccatgtcgtatccggtgtccgtgcttc 376  Q
    ||||||| ||||||||||||||| | |||||||| |       |||||| ||||||||||||||||||| ||||| |||||| |||||||||||||||||    
T  34595193 cgacaccgacacttgtaattacactgaattatgtgattttttcaaattattagttgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgtgcttc 34595094  T
Q  377 atag 380  Q
    ||||    
T  34595093 atag 34595090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 205 - 363
Target Start/End: Complemental strand, 17435330 - 17435172
Alignment:
Q  205 gctatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaa 304  Q
    ||||||||| ||| |||||||||||||||| ||| | |  |||||  ||||||||||||| |||||||||||  |||| |||||||||||||||| | ||    
T  17435330 gctatgaagtacggacacttttcagattagacgtgtcccagtgtcgaacacgtgtcgtgtccgacatcgacaaaacactaacacttgtaattacactgaa 17435231  T
Q  305 ttatgtaannnnnnnaaattagtagttgtgtcggcgtgtcaatgtccatgtcgtatccg 363  Q
    ||||||||       |||||| ||| | ||||| ||| ||| ||||| |||||||||||    
T  17435230 ttatgtaattttttaaaattattagctatgtcgacgtatcagtgtccgtgtcgtatccg 17435172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 273 - 380
Target Start/End: Original strand, 10770670 - 10770776
Alignment:
Q  273 gacacgacaccaacacttgtaattacattaaattatgtaannnnnnnaaattagtagttgtgtcggcgtgtcaatgtccatgtcgtatccggtgtccgtg 372  Q
    ||||||||||| ||||||||||||||| | |||||||| |       |||||| ||||||||| ||||||||| |||||||||||| ||| || ||||||    
T  10770670 gacacgacaccgacacttgtaattacactgaattatgtgattttttcaaattattagttgtgttggcgtgtcagtgtccatgtcgtgtcc-gtatccgtg 10770768  T
Q  373 cttcatag 380  Q
    ||||||||    
T  10770769 cttcatag 10770776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 206 - 372
Target Start/End: Original strand, 9107299 - 9107465
Alignment:
Q  206 ctatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaat 305  Q
    ||||||||||||  ||||  || ||||||| || | | |||||| |||||  || |||| ||||| |||||||||||| ||||||||||||||| | |||    
T  9107299 ctatgaagcacgggcactcctcggattaggtgtgtcccggtgtcggacacacgttgtgtccgacaccgacacgacaccgacacttgtaattacactgaat 9107398  T
Q  306 tatgtaannnnnnnaaattagtagttgtgtcggcgtgtcaatgtccatgtcgtatccggtgtccgtg 372  Q
    | ||| |       |||||| ||| ||||||||||||| | ||||| |||||| |||||||||||||    
T  9107399 tttgtgattttttcaaattattagctgtgtcggcgtgttagtgtccgtgtcgtgtccggtgtccgtg 9107465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 206 - 277
Target Start/End: Original strand, 33001229 - 33001300
Alignment:
Q  206 ctatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacac 277  Q
    ||||||||||| |||||| ||  |||||||||||||  ||||||||||||||||||||| ||||| ||||||    
T  33001229 ctatgaagcacaaacactctttggattaggcgtatttcggtgtcagacacgtgtcgtgtccgacaccgacac 33001300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 277 - 372
Target Start/End: Original strand, 7977830 - 7977925
Alignment:
Q  277 cgacaccaacacttgtaattacattaaattatgtaannnnnnnaaattagtagttgtgtcggcgtgtcaatgtccatgtcgtatccggtgtccgtg 372  Q
    ||||||| ||||||||||||||| | ||||||||||       |||||| ||| ||||||||||||||| | |||||||||| ||| |||||||||    
T  7977830 cgacaccgacacttgtaattacactgaattatgtaattttttcaaattattagctgtgtcggcgtgtcagtatccatgtcgtgtccagtgtccgtg 7977925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 277 - 372
Target Start/End: Original strand, 8776973 - 8777068
Alignment:
Q  277 cgacaccaacacttgtaattacattaaattatgtaannnnnnnaaattagtagttgtgtcggcgtgtcaatgtccatgtcgtatccggtgtccgtg 372  Q
    ||||||||||||||||||||||| | |||| ||| |       |||||| ||||||||||||||||||| ||||| |||||| |||| ||||||||    
T  8776973 cgacaccaacacttgtaattacactgaattttgtgattttttcaaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtccgttgtccgtg 8777068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 206 - 312
Target Start/End: Original strand, 25038000 - 25038106
Alignment:
Q  206 ctatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaat 305  Q
    |||||||||||  |||||| |||| | | |||| |||||||||| ||||||||||||||  |||| | |||| | ||| ||| ||||||||||| |||||    
T  25038000 ctatgaagcacatacacttctcaggtcatgcgtgttctggtgtcggacacgtgtcgtgtcggacaccaacacaataccgacatttgtaattacactaaat 25038099  T
Q  306 tatgtaa 312  Q
    |||||||    
T  25038100 tatgtaa 25038106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 278 - 372
Target Start/End: Complemental strand, 7938174 - 7938080
Alignment:
Q  278 gacaccaacacttgtaattacattaaattatgtaannnnnnnaaattagtagttgtgtcggcgtgtcaatgtccatgtcgtatccggtgtccgtg 372  Q
    |||||| |||||| |||||||| |||||||| | |       |||||| ||| ||||||||||||||| |||||||||||| |||||||||||||    
T  7938174 gacaccgacacttataattacactaaattatatgattttttcaaattattagctgtgtcggcgtgtcagtgtccatgtcgtgtccggtgtccgtg 7938080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 244 - 363
Target Start/End: Complemental strand, 12696410 - 12696297
Alignment:
Q  244 ggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaattatgtaannnnnnnaaattagtagttgtgtcggcgtgt 343  Q
    ||||||||||||||||||||| |||||      ||||||  ||||||||||||||| | ||||||||||       |||||| ||| |||||||||||||    
T  12696410 ggtgtcagacacgtgtcgtgtccgaca------cgacactgacacttgtaattacactgaattatgtaattttttcaaattattagctgtgtcggcgtgt 12696317  T
Q  344 caatgtccatgtcgtatccg 363  Q
    || ||||| |||||| ||||    
T  12696316 cagtgtccgtgtcgtgtccg 12696297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 288
Target Start/End: Complemental strand, 3209518 - 3209436
Alignment:
Q  206 ctatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacac 288  Q
    ||||||||||| ||||||  || |||||||||| | | |||||| ||| ||||||||||||||||  ||||||||||| ||||    
T  3209518 ctatgaagcacaaacactcctcggattaggcgtgtccgggtgtcggacgcgtgtcgtgttcgacactgacacgacaccgacac 3209436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 310
Target Start/End: Original strand, 4118264 - 4118366
Alignment:
Q  208 atgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaatta 307  Q
    ||||| |||| ||| || ||||||||||||| || |  ||||| |||||| | |||| |||||  ||||| | ||||||||||||||||||||| |||||    
T  4118264 atgaatcacggacatttctcagattaggcgtgttttattgtcaaacacgtattgtgtccgacactgacacaaaaccaacacttgtaattacatttaatta 4118363  T
Q  308 tgt 310  Q
    |||    
T  4118364 tgt 4118366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 259 - 365
Target Start/End: Original strand, 6349719 - 6349825
Alignment:
Q  259 tcgtgttcgacatcgacacgacaccaacacttgtaattacattaaattatgtaannnnnnnaaattagtagttgtgtcggcgtgtcaatgtccatgtcgt 358  Q
    |||||||||||||| ||||| || |||||| |||||||||| | ||||||||||       |||||| || || ||||||| | |||||||||||||  |    
T  6349719 tcgtgttcgacatcaacacggcatcaacacatgtaattacaatgaattatgtaattttttcaaattattaattatgtcggcatatcaatgtccatgtaat 6349818  T
Q  359 atccggt 365  Q
    |||||||    
T  6349819 atccggt 6349825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 262 - 310
Target Start/End: Original strand, 785440 - 785488
Alignment:
Q  262 tgttcgacatcgacacgacaccaacacttgtaattacattaaattatgt 310  Q
    ||||||||| |||||||||||| |||||||| |||||||| ||||||||    
T  785440 tgttcgacaccgacacgacaccgacacttgtgattacattgaattatgt 785488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 320 - 368
Target Start/End: Complemental strand, 19044480 - 19044432
Alignment:
Q  320 aaattagtagttgtgtcggcgtgtcaatgtccatgtcgtatccggtgtc 368  Q
    |||||| |||| |||||||||||||| |||||||||||||| |||||||    
T  19044480 aaattattagtcgtgtcggcgtgtcagtgtccatgtcgtattcggtgtc 19044432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 301
Target Start/End: Complemental strand, 22746036 - 22745992
Alignment:
Q  257 tgtcgtgttcgacatcgacacgacaccaacacttgtaattacatt 301  Q
    |||||||||||||| |||||||||||| |||||||| ||||||||    
T  22746036 tgtcgtgttcgacagcgacacgacaccgacacttgtgattacatt 22745992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 277
Target Start/End: Complemental strand, 28152217 - 28152146
Alignment:
Q  206 ctatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacac 277  Q
    ||||||||||||||||||  || |||||||| | | | |||||| |||||||||||||| ||||| ||||||    
T  28152217 ctatgaagcacgaacactcctcggattaggcctgtcccggtgtcggacacgtgtcgtgtccgacaccgacac 28152146  T

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Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 256 - 310
Target Start/End: Original strand, 5970087 - 5970141
Alignment:
Q  256 gtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaattatgt 310  Q
    ||||||||| ||||| |||||||||||| ||| ||||||||||| | ||||||||    
T  5970087 gtgtcgtgtccgacaccgacacgacacccacatttgtaattacactgaattatgt 5970141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 256 - 310
Target Start/End: Complemental strand, 8714060 - 8714006
Alignment:
Q  256 gtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaattatgt 310  Q
    ||||||||| ||||| |||||||||||| ||| ||||||||||| | ||||||||    
T  8714060 gtgtcgtgtccgacaccgacacgacacccacatttgtaattacactgaattatgt 8714006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 244 - 310
Target Start/End: Complemental strand, 9522983 - 9522917
Alignment:
Q  244 ggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaattatgt 310  Q
    |||||| |||||||||||  | ||||| |||||| ||||| ||||||||||||||| | ||||||||    
T  9522983 ggtgtcggacacgtgtcggatccgacaccgacacaacaccgacacttgtaattacactgaattatgt 9522917  T

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Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 249 - 299
Target Start/End: Original strand, 16488562 - 16488612
Alignment:
Q  249 cagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattaca 299  Q
    |||||||||||||||| ||||| |||||||||||| |||| | ||||||||    
T  16488562 cagacacgtgtcgtgtccgacaccgacacgacaccgacacatataattaca 16488612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 267 - 309
Target Start/End: Original strand, 20576623 - 20576665
Alignment:
Q  267 gacatcgacacgacaccaacacttgtaattacattaaattatg 309  Q
    |||||||||||||||||||||||| |||||||| | |||||||    
T  20576623 gacatcgacacgacaccaacacttataattacactgaattatg 20576665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 273 - 311
Target Start/End: Original strand, 21395304 - 21395342
Alignment:
Q  273 gacacgacaccaacacttgtaattacattaaattatgta 311  Q
    ||||||||||| ||||||||||||||| |||||||||||    
T  21395304 gacacgacaccgacacttgtaattacactaaattatgta 21395342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 308
Target Start/End: Original strand, 11424685 - 11424742
Alignment:
Q  251 gacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaattat 308  Q
    ||||| |||||||||||||| |||||| |||||||||| | |||||| ||| ||||||    
T  11424685 gacacatgtcgtgttcgacaccgacacaacaccaacacatataattatattgaattat 11424742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 332 - 372
Target Start/End: Original strand, 5732565 - 5732605
Alignment:
Q  332 gtgtcggcgtgtcaatgtccatgtcgtatccggtgtccgtg 372  Q
    |||||||||||||| |||||||||||| ||| |||||||||    
T  5732565 gtgtcggcgtgtcagtgtccatgtcgtgtccagtgtccgtg 5732605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 206 - 270
Target Start/End: Original strand, 17327590 - 17327654
Alignment:
Q  206 ctatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgaca 270  Q
    |||||||||||| |||||  || |||||||||| | |  |||||||||||||||||||| |||||    
T  17327590 ctatgaagcacggacactcctcggattaggcgtgtccctgtgtcagacacgtgtcgtgtccgaca 17327654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 1e-30; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 206 - 371
Target Start/End: Complemental strand, 24339772 - 24339607
Alignment:
Q  206 ctatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaat 305  Q
    ||||||||||||  ||||  || |||||||||| | | |||||| || ||||||||||| ||||| |||||||||||| ||||||||||||||| | |||    
T  24339772 ctatgaagcacgggcactcctcggattaggcgtgtcccggtgtcggatacgtgtcgtgtccgacaccgacacgacaccgacacttgtaattacactgaat 24339673  T
Q  306 tatgtaannnnnnnaaattagtagttgtgtcggcgtgtcaatgtccatgtcgtatccggtgtccgt 371  Q
    ||||| |       |||||| ||| |||||||||||||||||||||||||||| ||||||||||||    
T  24339672 tatgtgattttttcaaattattagctgtgtcggcgtgtcaatgtccatgtcgtgtccggtgtccgt 24339607  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 273 - 371
Target Start/End: Complemental strand, 27945104 - 27945006
Alignment:
Q  273 gacacgacaccaacacttgtaattacattaaattatgtaannnnnnnaaattagtagttgtgtcggcgtgtcaatgtccatgtcgtatccggtgtccgt 371  Q
    ||||||||||| ||||||||||||||| | ||||||||||       |||||| |||| |||||||||||||| ||||| |||||| ||||||||||||    
T  27945104 gacacgacaccgacacttgtaattacactgaattatgtaattttctcaaattattagtggtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgt 27945006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 206 - 368
Target Start/End: Original strand, 5409771 - 5409927
Alignment:
Q  206 ctatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaat 305  Q
    |||||||||||| |||||  || |||||||||| | | |||||| ||||||||||||||       |||||||||||| |||||||||||| || | |||    
T  5409771 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgt------ccgacacgacaccgacacttgtaattgcactgaat 5409864  T
Q  306 tatgtaannnnnnnaaattagtagttgtgtcggcgtgtcaatgtccatgtcgtatccggtgtc 368  Q
    ||||| |       |||||| ||| ||| || |||||||| ||||||||||||||||||||||    
T  5409865 tatgtgattttttcaaattattagctgtatcagcgtgtcagtgtccatgtcgtatccggtgtc 5409927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 206 - 310
Target Start/End: Complemental strand, 6028755 - 6028651
Alignment:
Q  206 ctatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaat 305  Q
    |||||||  ||||| ||| |||||||||||||| |    |||||  || ||||||||||||||||  ||||||||||| ||| |||||||||||||||||    
T  6028755 ctatgaattacgaatactcttcagattaggcgtgtctcagtgtcgaactcgtgtcgtgttcgacactgacacgacaccgacatttgtaattacattaaat 6028656  T
Q  306 tatgt 310  Q
    |||||    
T  6028655 tatgt 6028651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 230 - 371
Target Start/End: Complemental strand, 7438812 - 7438671
Alignment:
Q  230 attaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaattatgtaannnnnnnaaattagtag 329  Q
    ||||||||| | || |||||  ||| |||||||||| |||| ||||| |||||| ||||||||||||||||| |||||||| |       |||||| ||     
T  7438812 attaggcgtgtcctagtgtcgcacatgtgtcgtgtttgacaccgacatgacaccgacacttgtaattacattgaattatgtgattttttcaaattattaa 7438713  T
Q  330 ttgtgtcggcgtgtcaatgtccatgtcgtatccggtgtccgt 371  Q
     ||||||||| ||||| |||  |||||||||||| |||||||    
T  7438712 ctgtgtcggcatgtcagtgtttatgtcgtatccgatgtccgt 7438671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 211 - 370
Target Start/End: Complemental strand, 13770810 - 13770657
Alignment:
Q  211 aagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaattatgt 310  Q
    ||||||| ||||| ||| |||||||||| ||| |||||| ||||||||| |||| |||||      ||||| | ||||||||||||||| | ||||||||    
T  13770810 aagcacggacactcttcggattaggcgtgttccggtgtcggacacgtgttgtgtccgaca------cgacaacgacacttgtaattacactgaattatgt 13770717  T
Q  311 aannnnnnnaaattagtagttgtgtcggcgtgtcaatgtccatgtcgtatccggtgtccg 370  Q
    ||       |||||| ||| ||||||||||| ||| ||||| |||||| |||| ||||||    
T  13770716 aatttttttaaattattagctgtgtcggcgtatcagtgtccgtgtcgtgtccgatgtccg 13770657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 223 - 310
Target Start/End: Complemental strand, 21560616 - 21560529
Alignment:
Q  223 ttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaattatgt 310  Q
    |||||||||||||||| ||  ||||| ||||| || ||||||| |||| ||| |||||||| ||||||||||||||| | ||||||||    
T  21560616 ttttcagattaggcgtgtttcggtgttagacatgtatcgtgtttgacaccgatacgacaccgacacttgtaattacactgaattatgt 21560529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 206 - 308
Target Start/End: Complemental strand, 11831562 - 11831460
Alignment:
Q  206 ctatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaat 305  Q
    |||||||||| ||||| || |  ||||||||||  || ||||||| |||| |||||||| ||||| ||| ||||||| || ||||||||||||| |||||    
T  11831562 ctatgaagcatgaacagttcttggattaggcgtgctccggtgtcaaacacatgtcgtgtccgacaccgatacgacacgaatacttgtaattacactaaat 11831463  T
Q  306 tat 308  Q
    |||    
T  11831462 tat 11831460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 277 - 372
Target Start/End: Complemental strand, 25481961 - 25481866
Alignment:
Q  277 cgacaccaacacttgtaattacattaaattatgtaannnnnnnaaattagtagttgtgtcggcgtgtcaatgtccatgtcgtatccggtgtccgtg 372  Q
    ||||||||||||||||||||||| | |||||||| |       |||||| ||| ||||||||||||||| ||||||||| || |||| ||||||||    
T  25481961 cgacaccaacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtcggcgtgtcattgtccatgttgtgtccgatgtccgtg 25481866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 245 - 310
Target Start/End: Complemental strand, 2334340 - 2334276
Alignment:
Q  245 gtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaattatgt 310  Q
    ||||| |||| ||||||||| ||||| |||||||||||| ||||||||||||||| ||||||||||    
T  2334340 gtgtcggacatgtgtcgtgtccgaca-cgacacgacaccgacacttgtaattacactaaattatgt 2334276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 244 - 352
Target Start/End: Original strand, 11665407 - 11665515
Alignment:
Q  244 ggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaattatgtaannnnnnnaaattagtagttgtgtcggcgtgt 343  Q
    |||||| |||||||||||||||||||| ||||| |||| | |||||| |||||| | | |||||||| |       |||||| |||||||||| ||||||    
T  11665407 ggtgtcggacacgtgtcgtgttcgacaccgacatgacatcgacacttataattagactgaattatgtgattttttcaaattattagttgtgtcagcgtgt 11665506  T
Q  344 caatgtcca 352  Q
    |||| ||||    
T  11665507 caatatcca 11665515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 206 - 277
Target Start/End: Complemental strand, 21880271 - 21880200
Alignment:
Q  206 ctatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacac 277  Q
    |||||||||||| |||||| || |||||||||| | |||||||| |||| ||||||||| ||||| ||||||    
T  21880271 ctatgaagcacggacacttctcggattaggcgtgtcctggtgtcggacatgtgtcgtgtccgacaccgacac 21880200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 310
Target Start/End: Original strand, 9408265 - 9408367
Alignment:
Q  208 atgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaatta 307  Q
    |||||||||| ||| | ||| |||||||||| || ||||||| || |  | ||||||  |||| ||| |||||||| ||||||||||||||| |||||||    
T  9408265 atgaagcacggacattcttcggattaggcgtgttttggtgtcggatatatatcgtgtctgacaccgatacgacaccgacacttgtaattacactaaatta 9408364  T
Q  308 tgt 310  Q
    |||    
T  9408365 tgt 9408367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 278 - 372
Target Start/End: Original strand, 11061077 - 11061171
Alignment:
Q  278 gacaccaacacttgtaattacattaaattatgtaannnnnnnaaattagtagttgtgtcggcgtgtcaatgtccatgtcgtatccggtgtccgtg 372  Q
    |||||| ||||||||||||| | |||||||||| |       |||||| ||| |||||||| |||||| ||||| ||||||||||| ||||||||    
T  11061077 gacaccgacacttgtaattatactaaattatgtgattttttcaaattattagctgtgtcggtgtgtcagtgtccgtgtcgtatccgatgtccgtg 11061171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 246 - 299
Target Start/End: Complemental strand, 25822745 - 25822692
Alignment:
Q  246 tgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattaca 299  Q
    ||||||||||||||||||| ||| | ||| |||||||| |||||||||||||||    
T  25822745 tgtcagacacgtgtcgtgtccgataccgatacgacaccgacacttgtaattaca 25822692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 205 - 277
Target Start/End: Complemental strand, 598328 - 598256
Alignment:
Q  205 gctatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacac 277  Q
    ||||||||||||| |||||| || |||||||||| | | |||||| ||||||||||||||  |||| ||||||    
T  598328 gctatgaagcacggacacttctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtctgacaccgacac 598256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 260 - 312
Target Start/End: Complemental strand, 8160492 - 8160440
Alignment:
Q  260 cgtgttcgacatcgacacgacaccaacacttgtaattacattaaattatgtaa 312  Q
    ||||||||||| |||||||| |||||||| | |||||||| ||||||||||||    
T  8160492 cgtgttcgacaccgacacgataccaacacatataattacactaaattatgtaa 8160440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 332 - 379
Target Start/End: Complemental strand, 43249997 - 43249950
Alignment:
Q  332 gtgtcggcgtgtcaatgtccatgtcgtatccggtgtccgtgcttcata 379  Q
    |||||||||||||| ||||| |||| | ||||||||||||||||||||    
T  43249997 gtgtcggcgtgtcagtgtccgtgtcttgtccggtgtccgtgcttcata 43249950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 256 - 310
Target Start/End: Complemental strand, 43243157 - 43243103
Alignment:
Q  256 gtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaattatgt 310  Q
    |||| ||||||||||   |||||||| | ||||||||||||||||||||||||||    
T  43243157 gtgttgtgttcgacacaaacacgacatcgacacttgtaattacattaaattatgt 43243103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 373
Target Start/End: Complemental strand, 1433458 - 1433417
Alignment:
Q  332 gtgtcggcgtgtcaatgtccatgtcgtatccggtgtccgtgc 373  Q
    |||||||||||||||||||| |||||| | ||||||||||||    
T  1433458 gtgtcggcgtgtcaatgtccgtgtcgtgttcggtgtccgtgc 1433417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 4017729 - 4017777
Alignment:
Q  206 ctatgaagcacgaacacttttcagattaggcgtattctggtgtcagacac 255  Q
    ||||||||||||||||||||| ||||||||||| |||  |||||||||||    
T  4017729 ctatgaagcacgaacactttttagattaggcgtgttc-cgtgtcagacac 4017777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 299
Target Start/End: Complemental strand, 7058492 - 7058463
Alignment:
Q  270 atcgacacgacaccaacacttgtaattaca 299  Q
    ||||||||||||||||||||||||||||||    
T  7058492 atcgacacgacaccaacacttgtaattaca 7058463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 207 - 311
Target Start/End: Complemental strand, 4795018 - 4794914
Alignment:
Q  207 tatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaatt 306  Q
    ||||||||||  |||||| |  |||||| ||| ||  ||||||||| ||||||||||| ||||| ||| |||  ||| |||||| |||||||| | ||||    
T  4795018 tatgaagcacagacacttcttggattagacgtgtttaggtgtcagatacgtgtcgtgtccgacaccgatacggtaccgacacttataattacactgaatt 4794919  T
Q  307 atgta 311  Q
    |||||    
T  4794918 atgta 4794914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 260 - 308
Target Start/End: Original strand, 11272569 - 11272617
Alignment:
Q  260 cgtgttcgacatcgacacgacaccaacacttgtaattacattaaattat 308  Q
    ||||| ||||| |||||||||||| ||||||||||||||| | ||||||    
T  11272569 cgtgtccgacaccgacacgacaccgacacttgtaattacactgaattat 11272617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 332 - 376
Target Start/End: Original strand, 11722153 - 11722197
Alignment:
Q  332 gtgtcggcgtgtcaatgtccatgtcgtatccggtgtccgtgcttc 376  Q
    |||||||||||||| ||||| |||||| |||||| ||||||||||    
T  11722153 gtgtcggcgtgtcagtgtccgtgtcgtgtccggtatccgtgcttc 11722197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 2e-26; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 206 - 380
Target Start/End: Original strand, 41961579 - 41961753
Alignment:
Q  206 ctatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaat 305  Q
    |||||||||||| |||||| || |||||||||| | |  ||||| |||||||||||||| ||| | |||||||||||| |||||||||||||||   |||    
T  41961579 ctatgaagcacggacacttctcggattaggcgtgtcccagtgtcggacacgtgtcgtgtccgataccgacacgacaccgacacttgtaattacaccgaat 41961678  T
Q  306 tatgtaannnnnnnaaattagtagttgtgtcggcgtgtcaatgtccatgtcgtatccggtgtccgtgcttcatag 380  Q
     |||| |       |||||| |||||||| |||||||||| ||||  |||||| |||||||||||||||||||||    
T  41961679 aatgtgatattttcaaattattagttgtgacggcgtgtcagtgtctgtgtcgtgtccggtgtccgtgcttcatag 41961753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 205 - 372
Target Start/End: Original strand, 15796222 - 15796389
Alignment:
Q  205 gctatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaa 304  Q
    ||||||||||||||||||| ||  |||||||||| ||| |||||  ||||||||| |||| ||||| | |||||||||| ||| ||||||||||| | ||    
T  15796222 gctatgaagcacgaacactctttggattaggcgtgttccggtgttggacacgtgttgtgtccgacacctacacgacaccgacaattgtaattacactgaa 15796321  T
Q  305 ttatgtaannnnnnnaaattagtagttgtgtcggcgtgtcaatgtccatgtcgtatccggtgtccgtg 372  Q
    |||| | |       |||||| ||  ||||||||||||||| ||||| |||||| |||||||||||||    
T  15796322 ttatatgattttttcaaattattaactgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgtg 15796389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 206 - 344
Target Start/End: Complemental strand, 14209243 - 14209105
Alignment:
Q  206 ctatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaat 305  Q
    |||||||||||| |||||| |  ||||||| |||| | | ||||  ||||||||||||| ||||| |||||||||||  ||||||||||||||| | |||    
T  14209243 ctatgaagcacggacacttcttggattaggtgtatcccgatgtcgtacacgtgtcgtgtccgacaccgacacgacactgacacttgtaattacactgaat 14209144  T
Q  306 tatgtaannnnnnnaaattagtagttgtgtcggcgtgtc 344  Q
    ||||| |       |||||| ||||||||||||||||||    
T  14209143 tatgtgattttttaaaattattagttgtgtcggcgtgtc 14209105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 277 - 371
Target Start/End: Complemental strand, 55401134 - 55401040
Alignment:
Q  277 cgacaccaacacttgtaattacattaaattatgtaannnnnnnaaattagtagttgtgtcggcgtgtcaatgtccatgtcgtatccggtgtccgt 371  Q
    ||||||| ||||||||||||||| |||||||||| |       |||||| ||||||||||||||| ||| ||||| |||||||||||||||||||    
T  55401134 cgacaccgacacttgtaattacactaaattatgtgattttttcaaattattagttgtgtcggcgtatcagtgtccgtgtcgtatccggtgtccgt 55401040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 208 - 345
Target Start/End: Original strand, 4987222 - 4987359
Alignment:
Q  208 atgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaatta 307  Q
    |||||| ||| |||||  || |||||||||| | | |||||| |||||||||||||| | ||| ||||||| |||||||||||||||||||| | |||||    
T  4987222 atgaagtacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccaacaccgacacgtcaccaacacttgtaattacactgaatta 4987321  T
Q  308 tgtaannnnnnnaaattagtagttgtgtcggcgtgtca 345  Q
    ||| |       |||||| ||| |||||||||||||||    
T  4987322 tgtgattttttcaaattattagctgtgtcggcgtgtca 4987359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 251 - 372
Target Start/End: Original strand, 750592 - 750714
Alignment:
Q  251 gacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaattatgtaannnnnnnaaattagtagttgtgtcggcgtgtcaa-tgt 349  Q
    |||||||||||||| ||| | |||||||||||| |||||||||||| ||   |||||||| |       |||||| ||||||||||| |||||||| |||    
T  750592 gacacgtgtcgtgtccgataccgacacgacaccgacacttgtaattgcagcgaattatgtgatattttcaaattattagttgtgtcgccgtgtcaagtgt 750691  T
Q  350 ccatgtcgtatccggtgtccgtg 372  Q
    || |||||| |||||||||||||    
T  750692 ccgtgtcgtgtccggtgtccgtg 750714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 206 - 299
Target Start/End: Original strand, 34185052 - 34185145
Alignment:
Q  206 ctatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattaca 299  Q
    |||||||||||| |||||  || |||||||||| | | |||||| ||||| |||| ||| |||||| ||||||||||| |||||||||||||||    
T  34185052 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacatgtcttgtccgacatggacacgacaccgacacttgtaattaca 34185145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 277 - 372
Target Start/End: Original strand, 10335286 - 10335381
Alignment:
Q  277 cgacaccaacacttgtaattacattaaattatgtaannnnnnnaaattagtagttgtgtcggcgtgtcaatgtccatgtcgtatccggtgtccgtg 372  Q
    ||||||| ||||||||| ||||| |||| ||||| |       |||||| ||||||||||||||||||| ||||| |||||| |||||||||||||    
T  10335286 cgacaccgacacttgtatttacactaaaatatgtgactttttcaaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtg 10335381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 230 - 310
Target Start/End: Complemental strand, 14832205 - 14832125
Alignment:
Q  230 attaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaattatgt 310  Q
    ||||||||| | | |||||| |||||||||||||| ||| | |||||||||||  ||||||||||||||||| | ||||||    
T  14832205 attaggcgtgtcccggtgtcggacacgtgtcgtgtccgataccgacacgacactgacacttgtaattacattgagttatgt 14832125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 244 - 368
Target Start/End: Complemental strand, 25064999 - 25064877
Alignment:
Q  244 ggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaattatgtaannnnnnnaaattagtagttgtgtcggcgtgt 343  Q
    ||||||||||||||||||||| ||||| | |||||| ||||||||   |||||||| |||||||||| |       |||| | |||  ||||||||||||    
T  25064999 ggtgtcagacacgtgtcgtgtccgacaccaacacgataccaacac--ataattacactaaattatgtgattttttcaaatcattagcggtgtcggcgtgt 25064902  T
Q  344 caatgtccatgtcgtatccggtgtc 368  Q
    |||||||  |||||| |||||||||    
T  25064901 caatgtctgtgtcgtgtccggtgtc 25064877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 207 - 358
Target Start/End: Complemental strand, 14217021 - 14216870
Alignment:
Q  207 tatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaatt 306  Q
    ||||||||||| |||||| || ||||||| || | |  |||||  ||||||||||||| |||||   |||||||||  ||||||||||||||| | ||||    
T  14217021 tatgaagcacggacacttctcggattaggtgtgtcccagtgtcgtacacgtgtcgtgtccgacactaacacgacacggacacttgtaattacactgaatt 14216922  T
Q  307 atgtaannnnnnnaaattagtagttgtgtcggcgtgtcaatgtccatgtcgt 358  Q
    || | |       |||||| ||||||||||| ||||||| ||||| ||||||    
T  14216921 atatgatattttaaaattattagttgtgtcgacgtgtcagtgtccgtgtcgt 14216870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 207 - 358
Target Start/End: Complemental strand, 14223150 - 14222999
Alignment:
Q  207 tatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaatt 306  Q
    ||||||||||| |||||| || ||||||| || | |  |||||  ||||||||||||| |||||   |||||||||  ||||||||||||||| | ||||    
T  14223150 tatgaagcacggacacttctcggattaggtgtgtcccagtgtcgtacacgtgtcgtgtccgacactaacacgacacggacacttgtaattacactgaatt 14223051  T
Q  307 atgtaannnnnnnaaattagtagttgtgtcggcgtgtcaatgtccatgtcgt 358  Q
    || | |       |||||| ||||||||||| ||||||| ||||| ||||||    
T  14223050 atatgatattttaaaattattagttgtgtcgacgtgtcagtgtccgtgtcgt 14222999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 277 - 372
Target Start/End: Original strand, 16000016 - 16000111
Alignment:
Q  277 cgacaccaacacttgtaattacattaaattatgtaannnnnnnaaattagtagttgtgtcggcgtgtcaatgtccatgtcgtatccggtgtccgtg 372  Q
    ||||||| ||||||||| ||||| | |||||||| |       |||||| ||||||||||||||||||| ||||  |||||| | |||||||||||    
T  16000016 cgacaccgacacttgtagttacactgaattatgttatttttttaaattattagttgtgtcggcgtgtcagtgtctgtgtcgtgttcggtgtccgtg 16000111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 369
Target Start/End: Original strand, 35994780 - 35994829
Alignment:
Q  320 aaattagtagttgtgtcggcgtgtcaatgtccatgtcgtatccggtgtcc 369  Q
    |||||| ||| ||||||||| ||||| |||||||||||| ||||||||||    
T  35994780 aaattattagctgtgtcggcttgtcattgtccatgtcgtgtccggtgtcc 35994829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 310
Target Start/End: Complemental strand, 39756299 - 39756262
Alignment:
Q  273 gacacgacaccaacacttgtaattacattaaattatgt 310  Q
    ||||||||||| ||||||||||||| ||||||||||||    
T  39756299 gacacgacaccgacacttgtaattatattaaattatgt 39756262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 332 - 372
Target Start/End: Complemental strand, 8383261 - 8383221
Alignment:
Q  332 gtgtcggcgtgtcaatgtccatgtcgtatccggtgtccgtg 372  Q
    |||||||||||||||||||| |||||| ||| |||||||||    
T  8383261 gtgtcggcgtgtcaatgtccgtgtcgtgtccagtgtccgtg 8383221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 230 - 306
Target Start/End: Complemental strand, 11666050 - 11665974
Alignment:
Q  230 attaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaatt 306  Q
    ||||||||| ||| | | |||||||||||||||||   ||||| |||||||||| |||| | |||||||| ||||||    
T  11666050 attaggcgtgttccgatatcagacacgtgtcgtgtctaacatcaacacgacaccgacacatataattacactaaatt 11665974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 332 - 372
Target Start/End: Original strand, 24205096 - 24205136
Alignment:
Q  332 gtgtcggcgtgtcaatgtccatgtcgtatccggtgtccgtg 372  Q
    |||||||||||||| ||||| |||||| |||||||||||||    
T  24205096 gtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtg 24205136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 6e-26; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 205 - 350
Target Start/End: Original strand, 32461392 - 32461536
Alignment:
Q  205 gctatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaa 304  Q
    ||||||||||||| |||||| |  |||||||||| | |  |||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||    
T  32461392 gctatgaagcacggacacttcttggattaggcgtgtcccagtgtcagacacgtgtcgtgtccgacaccgacac-acaccaacacttgtaattacattaaa 32461490  T
Q  305 ttatgtaannnnnnnaaattagtagttgtgtcggcgtgtcaatgtc 350  Q
    |||||| |       |||||| |||||||| |||||||||| ||||    
T  32461491 ttatgtgattttttcaaattattagttgtgccggcgtgtcactgtc 32461536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 229 - 372
Target Start/End: Original strand, 6612123 - 6612266
Alignment:
Q  229 gattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaattatgtaannnnnnnaaattagta 328  Q
    |||||||||| | |||||||| ||||| | |||||| |||||||||||||||||| ||||||||||||||| | ||||||||||       |||||| ||    
T  6612123 gattaggcgtgtcctggtgtcggacacatatcgtgtccgacatcgacacgacaccgacacttgtaattacactgaattatgtaattttttcaaattatta 6612222  T
Q  329 gttgtgtcggcgtgtcaatgtccatgtcgtatccggtgtccgtg 372  Q
      ||| ||||||||||| ||||| |||||| |||||||| ||||    
T  6612223 actgtatcggcgtgtcattgtccgtgtcgtgtccggtgttcgtg 6612266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 206 - 356
Target Start/End: Original strand, 18556385 - 18556535
Alignment:
Q  206 ctatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaat 305  Q
    |||||||||||| |||||| || |||||||||| | |  ||||| || |||||||| ||  |||| || ||||||||||| |||||||||||||||||||    
T  18556385 ctatgaagcacggacacttctcggattaggcgtgtcccagtgtcggatacgtgtcgggtctgacaccgtcacgacaccaatacttgtaattacattaaat 18556484  T
Q  306 tatgtaannnnnnnaaattagtagttgtgtcggcgtgtcaatgtccatgtc 356  Q
    ||||| |       |||||| ||| ||||||||||||||| ||||| ||||    
T  18556485 tatgtgatattttcaaattattagctgtgtcggcgtgtcagtgtccgtgtc 18556535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 206 - 372
Target Start/End: Complemental strand, 47989627 - 47989462
Alignment:
Q  206 ctatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaat 305  Q
    |||||||||||| |||||  || |||||||||| | | | ||||||||| ||||||||| ||||| |||||||||||| ||||||||||||||| | |||    
T  47989627 ctatgaagcacggacactcctcggattaggcgtgtcccgatgtcagacatgtgtcgtgtccgacaccgacacgacaccgacacttgtaattacactgaat 47989528  T
Q  306 tatgtaannnnnnnaaattagtagttgtgtcggcgtgtcaatgtccatgtcgtatccggtgtccgtg 372  Q
    ||||| |       |||||| || |||||||||||||||| ||||  |||||| || ||| ||||||    
T  47989527 tatgtgatttttttaaattatta-ttgtgtcggcgtgtcagtgtctgtgtcgtgtctggtatccgtg 47989462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 206 - 310
Target Start/End: Complemental strand, 5944413 - 5944309
Alignment:
Q  206 ctatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaat 305  Q
    ||||||||||||||||||  || |||||||||||| | |||||| |||| |||| |||| || ||||||||||||||| |||||| |||||||| | |||    
T  5944413 ctatgaagcacgaacactcctcggattaggcgtatcccggtgtcggacatgtgttgtgtccgtcatcgacacgacaccgacacttataattacactgaat 5944314  T
Q  306 tatgt 310  Q
    |||||    
T  5944313 tatgt 5944309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 206 - 380
Target Start/End: Complemental strand, 40917879 - 40917707
Alignment:
Q  206 ctatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaat 305  Q
    |||||||||||| ||| |  || |||||||||| | | |||||| |||||||||||||| | ||| |||||||||||| | ||||||||||||| | |||    
T  40917879 ctatgaagcacggacagtcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccaacaccgacacgacaccgagacttgtaattacacttaat 40917780  T
Q  306 tatgtaannnnnnnaaattagtagttgtgtcggcgtgtcaatgtccatgtcgtatccggtgtccgtgcttcatag 380  Q
      ||| |       |||||| ||| ||||||||||||||| | ||| |||||| ||||||||||||| |||||||    
T  40917779 --tgtgattttttcaaattattagctgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtgtttcatag 40917707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 206 - 310
Target Start/End: Complemental strand, 6427594 - 6427490
Alignment:
Q  206 ctatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaat 305  Q
    |||||||||||| |||||  ||||||||||||| | | |||||| |||||||||||||| ||||  | |||||||||  ||||||||| ||||||| |||    
T  6427594 ctatgaagcacggacactcatcagattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacgcctacacgacactgacacttgtagttacattgaat 6427495  T
Q  306 tatgt 310  Q
    |||||    
T  6427494 tatgt 6427490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 206 - 310
Target Start/End: Original strand, 31694639 - 31694743
Alignment:
Q  206 ctatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaat 305  Q
    |||||||||||| |||||  ||||||||||||| ||| ||||||  | | |||| |||| ||||| |||||||||||| ||||||||||||| | | |||    
T  31694639 ctatgaagcacggacactcctcagattaggcgtgttccggtgtcgaatatgtgttgtgtccgacaccgacacgacaccgacacttgtaattatactgaat 31694738  T
Q  306 tatgt 310  Q
    |||||    
T  31694739 tatgt 31694743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 208 - 299
Target Start/End: Complemental strand, 17778670 - 17778583
Alignment:
Q  208 atgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattaca 299  Q
    ||||||||||||||||| || |||||||| | | | |||||| |||||||||||    ||||| |||||||||||| |||||||||||||||    
T  17778670 atgaagcacgaacacttctcggattaggcatgtcccggtgtcggacacgtgtcg----cgacaccgacacgacaccgacacttgtaattaca 17778583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 206 - 299
Target Start/End: Complemental strand, 25934746 - 25934653
Alignment:
Q  206 ctatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattaca 299  Q
    |||||||||||| |||||  |  ||| |||||||| |  |||||||||||||||||||| ||||| |||||||| ||| |||| | ||||||||    
T  25934746 ctatgaagcacggacactccttggataaggcgtatccccgtgtcagacacgtgtcgtgtccgacaccgacacgataccgacacatataattaca 25934653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 208 - 277
Target Start/End: Original strand, 29163323 - 29163392
Alignment:
Q  208 atgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacac 277  Q
    ||||||||||||||||| || |||||| ||| | | |||||||| |||||||||||| ||||| ||||||    
T  29163323 atgaagcacgaacacttctctgattagccgtgtcccggtgtcaggcacgtgtcgtgtccgacaccgacac 29163392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 244 - 308
Target Start/End: Original strand, 9629867 - 9629931
Alignment:
Q  244 ggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaattat 308  Q
    |||||| |||| ||||||||| |||||||||||||||||| |||||| |||| ||| | ||||||    
T  9629867 ggtgtcggacatgtgtcgtgtccgacatcgacacgacaccgacacttataatcacactgaattat 9629931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 266 - 310
Target Start/End: Original strand, 48547974 - 48548018
Alignment:
Q  266 cgacatcgacacgacaccaacacttgtaattacattaaattatgt 310  Q
    ||||| |||||||||||||| ||||||||||||||| ||||||||    
T  48547974 cgacaccgacacgacaccaatacttgtaattacattgaattatgt 48548018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 364
Target Start/End: Original strand, 5376483 - 5376587
Alignment:
Q  260 cgtgttcgacatcgacacgacaccaacacttgtaattacattaaattatgtaannnnnnnaaattagtagttgtgtcggcgtgtcaatgtccatgtcgta 359  Q
    ||||| |||||||||||||||||| |||||| |||||||| | |||||||| |       |||||| |||  |||||||||||| | ||||| ||||||     
T  5376483 cgtgtccgacatcgacacgacaccgacacttttaattacactgaattatgttattttcttaaattattagcggtgtcggcgtgttagtgtccgtgtcgtg 5376582  T
Q  360 tccgg 364  Q
    |||||    
T  5376583 tccgg 5376587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 371
Target Start/End: Original strand, 10572632 - 10572683
Alignment:
Q  320 aaattagtagttgtgtcggcgtgtcaatgtccatgtcgtatccggtgtccgt 371  Q
    |||||| |||| |||||||||||||| ||| |||||||| ||||||||||||    
T  10572632 aaattattagtggtgtcggcgtgtcagtgttcatgtcgtgtccggtgtccgt 10572683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 308
Target Start/End: Original strand, 28273060 - 28273119
Alignment:
Q  249 cagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaattat 308  Q
    |||| ||||||||||| ||||||||| | |||||| ||||||||||||||| | ||||||    
T  28273060 cagatacgtgtcgtgtccgacatcgataggacaccgacacttgtaattacactgaattat 28273119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 312
Target Start/End: Complemental strand, 12993324 - 12993218
Alignment:
Q  206 ctatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaat 305  Q
    ||||||||||| ||||||||| |||||| |||||||  |||||| ||||  |||| ||| | |||| ||||| ||||| |||  | |||||||||| |||    
T  12993324 ctatgaagcaccaacactttttagattatgcgtatttcggtgtcggacatatgtcatgtccaacattgacacaacaccgacatatataattacattgaat 12993225  T
Q  306 tatgtaa 312  Q
    || ||||    
T  12993224 tacgtaa 12993218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 264
Target Start/End: Complemental strand, 17408821 - 17408763
Alignment:
Q  206 ctatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgt 264  Q
    |||||||||||  ||||| ||||||||||| ||||  ||||||| ||||||||||||||    
T  17408821 ctatgaagcacagacactcttcagattaggtgtatcttggtgtcggacacgtgtcgtgt 17408763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 310
Target Start/End: Complemental strand, 2218302 - 2218265
Alignment:
Q  273 gacacgacaccaacacttgtaattacattaaattatgt 310  Q
    ||||||||||| ||||||||||||||| ||||||||||    
T  2218302 gacacgacaccgacacttgtaattacactaaattatgt 2218265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 344
Target Start/End: Complemental strand, 9828174 - 9828036
Alignment:
Q  206 ctatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaat 305  Q
    |||||||||||| |||||  || |||||| ||| | | |||||| ||||||||||||||  ||||  ||||||||||| |||| |  ||||||| | |||    
T  9828174 ctatgaagcacggacactcctcggattagacgtgtcccggtgtcggacacgtgtcgtgtctgacacggacacgacaccgacacataaaattacactgaat 9828075  T
Q  306 tatgtaannnnnnnaaattagtagttgtgtcggcgtgtc 344  Q
    ||||| |       |||||| |||| |||||||||||||    
T  9828074 tatgtgattttatcaaattattagtggtgtcggcgtgtc 9828036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 371
Target Start/End: Original strand, 39130767 - 39130861
Alignment:
Q  277 cgacaccaacacttgtaattacattaaattatgtaannnnnnnaaattagtagttgtgtcggcgtgtcaatgtccatgtcgtatccggtgtccgt 371  Q
    ||||||| |||| | |||||||| |||||||| |||       |||||| || | ||||| |||||||||| |||||||||| ||||||||||||    
T  39130767 cgacaccgacacatataattacactaaattatataattttctaaaattattaatagtgtcagcgtgtcaatatccatgtcgtgtccggtgtccgt 39130861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 206 - 310
Target Start/End: Original strand, 16164244 - 16164348
Alignment:
Q  206 ctatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaat 305  Q
    ||||||| |||  ||||| ||| |||||||||| | |||||||| ||||||||| | || | ||| | ||||||||   |||| | ||||||||||||||    
T  16164244 ctatgaaacacatacactcttcggattaggcgtgtcctggtgtcggacacgtgttgcgtccaacaccaacacgacaatgacacatataattacattaaat 16164343  T
Q  306 tatgt 310  Q
    |||||    
T  16164344 tatgt 16164348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 270 - 310
Target Start/End: Original strand, 26526749 - 26526789
Alignment:
Q  270 atcgacacgacaccaacacttgtaattacattaaattatgt 310  Q
    |||||||| ||||| ||||||||||||| ||||||||||||    
T  26526749 atcgacacaacaccgacacttgtaattatattaaattatgt 26526789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 331 - 371
Target Start/End: Original strand, 48040516 - 48040556
Alignment:
Q  331 tgtgtcggcgtgtcaatgtccatgtcgtatccggtgtccgt 371  Q
    ||||||||||||||| ||||| |||||| ||||||||||||    
T  48040516 tgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgt 48040556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 6e-23; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 244 - 372
Target Start/End: Complemental strand, 21542122 - 21541994
Alignment:
Q  244 ggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaattatgtaannnnnnnaaattagtagttgtgtcggcgtgt 343  Q
    |||||| |||||||||||||| ||||| |||||||||||| ||||||||||||||| | |||||||| |       |||||| ||||||||||||| |||    
T  21542122 ggtgtcggacacgtgtcgtgtccgacaccgacacgacaccgacacttgtaattacactgaattatgttatctttttaaattattagttgtgtcggcatgt 21542023  T
Q  344 caatgtccatgtcgtatccggtgtccgtg 372  Q
    |||||||  |||||| || ||||||||||    
T  21542022 caatgtctgtgtcgtgtctggtgtccgtg 21541994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 205 - 372
Target Start/End: Complemental strand, 21522881 - 21522714
Alignment:
Q  205 gctatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaa 304  Q
    ||||||| ||||| ||||| ||  |||||||||| | | |||| | |||||||||||||| ||||| |||||||||||| ||| ||||||||||| | ||    
T  21522881 gctatgatgcacggacactctttggattaggcgtgtcccggtgccggacacgtgtcgtgtccgacaccgacacgacaccgacaattgtaattacactgaa 21522782  T
Q  305 ttatgtaannnnnnnaaattagtagttgtgtcggcgtgtcaatgtccatgtcgtatccggtgtccgtg 372  Q
    |||||| |       |||||| ||| ||||||||||||||| ||||| |||||| ||||||| |||||    
T  21522781 ttatgttattttttaaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgaccgtg 21522714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 205 - 372
Target Start/End: Complemental strand, 21533447 - 21533280
Alignment:
Q  205 gctatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaa 304  Q
    ||||||| ||||| ||||| ||  |||||||||| | | |||| | |||||||||||||| ||||| |||||||||||| ||| ||||||||||| | ||    
T  21533447 gctatgatgcacggacactctttggattaggcgtgtcccggtgccggacacgtgtcgtgtccgacaccgacacgacaccgacaattgtaattacactgaa 21533348  T
Q  305 ttatgtaannnnnnnaaattagtagttgtgtcggcgtgtcaatgtccatgtcgtatccggtgtccgtg 372  Q
    |||||| |       |||||| ||| ||||||||||||||| ||||| |||||| ||||||| |||||    
T  21533347 ttatgttattttttaaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgaccgtg 21533280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 206 - 306
Target Start/End: Original strand, 32766872 - 32766972
Alignment:
Q  206 ctatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaat 305  Q
    |||||||||||| |||||  ||||||||| ||||| |||||||| |||||||||||| ||||||| ||||||||||| ||||| | |||||||||| |||    
T  32766872 ctatgaagcacggacactcctcagattagacgtatcctggtgtcggacacgtgtcgttttcgacaccgacacgacacaaacacatataattacattgaat 32766971  T
Q  306 t 306  Q
    |    
T  32766972 t 32766972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 208 - 368
Target Start/End: Complemental strand, 19579829 - 19579669
Alignment:
Q  208 atgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaatta 307  Q
    ||||| |||| |||||  || |||||||||| | | ||||| |||||  |||||||| |||||  ||||||||||| |||||||||||| || |||||||    
T  19579829 atgaaacacgtacactcctcggattaggcgtgtcccggtgttagacatatgtcgtgtccgacactgacacgacaccgacacttgtaattgcactaaatta 19579730  T
Q  308 tgtaannnnnnnaaattagtagttgtgtcggcgtgtcaatgtccatgtcgtatccggtgtc 368  Q
    ||| |       |||||| ||| ||||||||||| ||| ||||| ||| ||||||||||||    
T  19579729 tgtgattttctcaaattattagctgtgtcggcgtatcagtgtccgtgttgtatccggtgtc 19579669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 205 - 277
Target Start/End: Original strand, 21576684 - 21576756
Alignment:
Q  205 gctatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacac 277  Q
    ||||||||||||| |||||  || |||||||||| | |  |||||||||||||||||||| ||||||||||||    
T  21576684 gctatgaagcacggacactcctcggattaggcgtgtcccagtgtcagacacgtgtcgtgtccgacatcgacac 21576756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 206 - 310
Target Start/End: Complemental strand, 39698671 - 39698567
Alignment:
Q  206 ctatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaat 305  Q
    |||||||||||| |||||  || |||||||||| |   |||||| || || |||||||| ||||| |||||||||||  ||||||||||||||| | |||    
T  39698671 ctatgaagcacggacactcctcggattaggcgtgtctcggtgtcggatacatgtcgtgtccgacaccgacacgacactgacacttgtaattacactgaat 39698572  T
Q  306 tatgt 310  Q
    |||||    
T  39698571 tatgt 39698567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 312
Target Start/End: Complemental strand, 18592163 - 18592097
Alignment:
Q  246 tgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaattatgtaa 312  Q
    |||||||||||||| |||| ||||| ||||||||||||  ||| | |||||||||| ||||||||||    
T  18592163 tgtcagacacgtgttgtgtccgacaccgacacgacaccggcacatataattacattgaattatgtaa 18592097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 292 - 371
Target Start/End: Complemental strand, 22013458 - 22013379
Alignment:
Q  292 taattacattaaattatgtaannnnnnnaaattagtagttgtgtcggcgtgtcaatgtccatgtcgtatccggtgtccgt 371  Q
    |||||||| ||||||||||||       |||||| ||| ||||||||||||||| ||||| |||||| ||||||||||||    
T  22013458 taattacactaaattatgtaatttttccaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgt 22013379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 205 - 310
Target Start/End: Original strand, 41091185 - 41091290
Alignment:
Q  205 gctatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaa 304  Q
    |||||||||||||||||||  ||||||||| |||    |||||| |||||| ||||| || |||||| ||||||||| | |||| | |||||||| | ||    
T  41091185 gctatgaagcacgaacactcctcagattagacgtgccttggtgttagacacatgtcgcgtccgacattgacacgacatcgacacatataattacactgaa 41091284  T
Q  305 ttatgt 310  Q
    ||||||    
T  41091285 ttatgt 41091290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 207 - 299
Target Start/End: Complemental strand, 6401627 - 6401535
Alignment:
Q  207 tatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattaca 299  Q
    ||||||||||| |||||  |  ||| |||||||| |  |||||||||||||||||||| |||||  ||||||||||| |||| | ||||||||    
T  6401627 tatgaagcacggacactccttggataaggcgtatccccgtgtcagacacgtgtcgtgtccgacactgacacgacaccgacacatataattaca 6401535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 320 - 372
Target Start/End: Complemental strand, 15382493 - 15382441
Alignment:
Q  320 aaattagtagttgtgtcggcgtgtcaatgtccatgtcgtatccggtgtccgtg 372  Q
    |||||| ||| ||||||||||||||| ||||| |||||| |||||||||||||    
T  15382493 aaattattagctgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgtg 15382441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 340 - 384
Target Start/End: Complemental strand, 36640183 - 36640139
Alignment:
Q  340 gtgtcaatgtccatgtcgtatccggtgtccgtgcttcatagatgt 384  Q
    ||||| |||||||||||||||| |||||| |||||||||||||||    
T  36640183 gtgtccatgtccatgtcgtatcaggtgtctgtgcttcatagatgt 36640139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 333 - 380
Target Start/End: Complemental strand, 21137692 - 21137645
Alignment:
Q  333 tgtcggcgtgtcaatgtccatgtcgtatccggtgtccgtgcttcatag 380  Q
    ||||||||||||| ||||| ||| || |||||||||||||||||||||    
T  21137692 tgtcggcgtgtcagtgtccgtgttgtgtccggtgtccgtgcttcatag 21137645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 372
Target Start/End: Complemental strand, 41995486 - 41995435
Alignment:
Q  321 aattagtagttgtgtcggcgtgtcaatgtccatgtcgtatccggtgtccgtg 372  Q
    ||||| ||||||||||||||||||| ||||  |||||||||| |||||||||    
T  41995486 aattattagttgtgtcggcgtgtcagtgtctgtgtcgtatccagtgtccgtg 41995435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 249 - 299
Target Start/End: Complemental strand, 21814348 - 21814298
Alignment:
Q  249 cagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattaca 299  Q
    |||||||||||||||| ||||| |||||||||||| |||| | ||||||||    
T  21814348 cagacacgtgtcgtgtccgacaccgacacgacaccgacacatataattaca 21814298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 308
Target Start/End: Original strand, 8044262 - 8044311
Alignment:
Q  259 tcgtgttcgacatcgacacgacaccaacacttgtaattacattaaattat 308  Q
    |||||| ||||| ||||||||||  ||||||||||||| |||||||||||    
T  8044262 tcgtgtccgacaccgacacgacataaacacttgtaattccattaaattat 8044311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 284
Target Start/End: Original strand, 18316856 - 18316933
Alignment:
Q  207 tatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacacca 284  Q
    ||||||||||| ||||| ||  |||||| ||| |||||||||| || |  |||||| ||||||||| |||||||||||    
T  18316856 tatgaagcacggacactatttggattagacgtgttctggtgtcggaaatatgtcgttttcgacatcaacacgacacca 18316933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 369
Target Start/End: Original strand, 22299523 - 22299572
Alignment:
Q  320 aaattagtagttgtgtcggcgtgtcaatgtccatgtcgtatccggtgtcc 369  Q
    |||||| ||| |||||||| |||||||| ||| |||||||||||||||||    
T  22299523 aaattattagctgtgtcggtgtgtcaatatccgtgtcgtatccggtgtcc 22299572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 320 - 380
Target Start/End: Complemental strand, 4105273 - 4105213
Alignment:
Q  320 aaattagtagttgtgtcggcgtgtcaatgtccatgtcgtatccggtgtccgtgcttcatag 380  Q
    |||||| ||||| ||||||||||||| | ||| |||| | |||||| ||||||||||||||    
T  4105273 aaattattagttatgtcggcgtgtcagtatccgtgtcatgtccggtatccgtgcttcatag 4105213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 206 - 270
Target Start/End: Complemental strand, 27932354 - 27932290
Alignment:
Q  206 ctatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgaca 270  Q
    ||||||||||| ||||||  ||  ||||||||| | |||||||| |||||||||||||| |||||    
T  27932354 ctatgaagcacaaacactcctcgaattaggcgtgtcctggtgtccgacacgtgtcgtgtccgaca 27932290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 206 - 310
Target Start/End: Complemental strand, 30098456 - 30098352
Alignment:
Q  206 ctatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaat 305  Q
    |||||||||||| ||| |  || ||||||| || | |||||||| |||||||||||||| |||||  ||| ||| ||| |||  | |||||||||| |||    
T  30098456 ctatgaagcacggacattcctcggattaggtgtgtcctggtgtctgacacgtgtcgtgtccgacactgactcgataccgacatctataattacattgaat 30098357  T
Q  306 tatgt 310  Q
    |||||    
T  30098356 tatgt 30098352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 206 - 368
Target Start/End: Complemental strand, 19482798 - 19482636
Alignment:
Q  206 ctatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaat 305  Q
    ||||||||||||||||||  || ||||||| || | |  ||||| |||||||||||||| | | | ||||||||||||||||||||||||||||   |||    
T  19482798 ctatgaagcacgaacactcctcggattaggtgtgtcccagtgtcggacacgtgtcgtgtccaataccgacacgacaccaacacttgtaattacaccgaat 19482699  T
Q  306 tatgtaannnnnnnaaattagtagttgtgtcggcgtgtcaatgtccatgtcgtatccggtgtc 368  Q
    ||||| |       |||||| ||||||||||||||||||| ||||  |||||| || ||||||    
T  19482698 tatgtgatattttcaaattattagttgtgtcggcgtgtcagtgtctgtgtcgtgtctggtgtc 19482636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 206 - 344
Target Start/End: Original strand, 24613630 - 24613768
Alignment:
Q  206 ctatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaat 305  Q
    |||||||||||| |||||  |  |||||| ||| | |||||||||||||||||||||||  |||| ||||| |||||| ||||||||| ||||||| |||    
T  24613630 ctatgaagcacggacactcctaggattagacgtgtcctggtgtcagacacgtgtcgtgtctgacaccgacatgacaccgacacttgtacttacattgaat 24613729  T
Q  306 tatgtaannnnnnnaaattagtagttgtgtcggcgtgtc 344  Q
    ||||| |       |||||| ||||||||||| ||||||    
T  24613730 tatgtgattttctcaaattattagttgtgtcgacgtgtc 24613768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 226 - 372
Target Start/End: Original strand, 27706126 - 27706272
Alignment:
Q  226 tcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaattatgtaannnnnnnaaatta 325  Q
    ||||||||||||| | | ||| || || ||||||||||| ||||||  |||||||||  ||||||||||||||| |||||||||| |       ||||||    
T  27706126 tcagattaggcgtgtcccggtatcggatacgtgtcgtgtccgacattaacacgacactcacacttgtaattacactaaattatgtgatttttttaaatta 27706225  T
Q  326 gtagttgtgtcggcgtgtcaatgtccatgtcgtatccggtgtccgtg 372  Q
     || |||||||| ||||||| ||||| |||||| || ||||||||||    
T  27706226 ttaattgtgtcgacgtgtcagtgtccctgtcgtgtctggtgtccgtg 27706272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 254 - 312
Target Start/End: Complemental strand, 51701340 - 51701282
Alignment:
Q  254 acgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaattatgtaa 312  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||| | ||||||||||    
T  51701340 acgtgtcgtgttcgacaccgacacgacactaacacttgtaattacactcaattatgtaa 51701282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 206 - 310
Target Start/End: Original strand, 22234819 - 22234923
Alignment:
Q  206 ctatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaat 305  Q
    ||||||||||||||||||| || ||||||  || | |||||||| ||||||||||||||  |||| |||||||||||| |||| |  ||||||| | |||    
T  22234819 ctatgaagcacgaacacttctcggattagctgtgtcctggtgtcggacacgtgtcgtgtcagacaccgacacgacaccgacacatagaattacactgaat 22234918  T
Q  306 tatgt 310  Q
    |||||    
T  22234919 tatgt 22234923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 207 - 299
Target Start/End: Original strand, 30982808 - 30982900
Alignment:
Q  207 tatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattaca 299  Q
    ||||||||||| ||||| ||  |||||||||| | | |||||| ||||||||||||||  |||| |||||||||||| |||||| ||||||||    
T  30982808 tatgaagcacggacactctttggattaggcgtgtcccggtgtcggacacgtgtcgtgtctgacaccgacacgacaccgacacttataattaca 30982900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 277 - 381
Target Start/End: Complemental strand, 21945562 - 21945458
Alignment:
Q  277 cgacaccaacacttgtaattacattaaattatgtaannnnnnnaaattagtagttgtgtcggcgtgtcaatgtccatgtcgtatccggtgtccgtgcttc 376  Q
    ||||||| ||||||||||||||| | |||||||| |       |||||| ||| ||||||||| ||||| ||||  |||| | |||||||||||||||||    
T  21945562 cgacaccgacacttgtaattacactgaattatgtcattttttcaaattattagctgtgtcggcatgtcagtgtctgtgtcatgtccggtgtccgtgcttc 21945463  T
Q  377 ataga 381  Q
    |||||    
T  21945462 ataga 21945458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 206 - 269
Target Start/End: Complemental strand, 35161155 - 35161092
Alignment:
Q  206 ctatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgac 269  Q
    |||||||||||| ||||||||| ||||||| || ||| |||||| |||||||||||||| ||||    
T  35161155 ctatgaagcacggacacttttcggattaggtgtgttccggtgtcggacacgtgtcgtgtccgac 35161092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 277 - 372
Target Start/End: Original strand, 23292986 - 23293081
Alignment:
Q  277 cgacaccaacacttgtaattacattaaattatgtaannnnnnnaaattagtagttgtgtcggcgtgtcaatgtccatgtcgtatccggtgtccgtg 372  Q
    ||||||| ||||||||||||| | | |||||||| |       |||||| ||| ||||||||||||||| ||||| |||||| |||||||||||||    
T  23292986 cgacaccgacacttgtaattatactgaattatgtgattttttcaaattattagctgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgtg 23293081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 277 - 371
Target Start/End: Original strand, 12895274 - 12895368
Alignment:
Q  277 cgacaccaacacttgtaattacattaaattatgtaannnnnnnaaattagtagttgtgtcggcgtgtcaatgtccatgtcgtatccggtgtccgt 371  Q
    ||||||| |||||| ||||||||  ||||||||| |       |||||| || |||||||||||||||| ||| | |||||||||||||||||||    
T  12895274 cgacaccgacacttataattacacaaaattatgtgattttttcaaattattatttgtgtcggcgtgtcattgttcgtgtcgtatccggtgtccgt 12895368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 278 - 372
Target Start/End: Original strand, 35157986 - 35158080
Alignment:
Q  278 gacaccaacacttgtaattacattaaattatgtaannnnnnnaaattagtagttgtgtcggcgtgtcaatgtccatgtcgtatccggtgtccgtg 372  Q
    |||||| |||||| |||||||| |||||||||| |       |||||| |||||| |||||||||||| ||||| ||| || |||||||||||||    
T  35157986 gacaccgacacttataattacactaaattatgtgatttttccaaattattagttgcgtcggcgtgtcagtgtccgtgttgtgtccggtgtccgtg 35158080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 277 - 358
Target Start/End: Original strand, 2361975 - 2362056
Alignment:
Q  277 cgacaccaacacttgtaattacattaaattatgtaannnnnnnaaattagtagttgtgtcggcgtgtcaatgtccatgtcgt 358  Q
    ||||||| |||||| |||||||| ||||||||||||       |||||| ||| |||||||| ||||||||||| |||||||    
T  2361975 cgacaccgacacttttaattacactaaattatgtaattttttcaaattattagctgtgtcggtgtgtcaatgtcaatgtcgt 2362056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 320 - 384
Target Start/End: Complemental strand, 49431041 - 49430978
Alignment:
Q  320 aaattagtagttgtgtcggcgtgtcaatgtccatgtcgtatccggtgtccgtgcttcatagatgt 384  Q
    |||||| ||| ||||||||||||||| |||||  ||||| |||| ||||||||||||||||||||    
T  49431041 aaattattagctgtgtcggcgtgtcactgtccgagtcgtgtccg-tgtccgtgcttcatagatgt 49430978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 299
Target Start/End: Complemental strand, 19312463 - 19312372
Alignment:
Q  208 atgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattaca 299  Q
    ||||| |||| |||||| ||||||||| ||| |   |||||| |||||||||||| | ||||| |||||||||||| | |||| ||||||||    
T  19312463 atgaaacacggacacttctcagattagacgtgtctcggtgtcggacacgtgtcgtatccgacaacgacacgacaccgatacttataattaca 19312372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 277
Target Start/End: Original strand, 23292926 - 23292997
Alignment:
Q  206 ctatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacac 277  Q
    |||||||||||| |||||  || |||||||||| | | |||||| |||||||||||||| ||||| ||||||    
T  23292926 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacaccgacac 23292997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 277
Target Start/End: Original strand, 34306744 - 34306815
Alignment:
Q  206 ctatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacac 277  Q
    |||||||||||||||| |  ||||||||||||| |   |||||| |||||||||||||| ||||| ||||||    
T  34306744 ctatgaagcacgaacattcctcagattaggcgtgtctcggtgtcggacacgtgtcgtgtccgacaccgacac 34306815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 229 - 283
Target Start/End: Original strand, 15724506 - 15724560
Alignment:
Q  229 gattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacacc 283  Q
    |||||||||| || ||||||| ||||||||| |||| ||||| ||||||||||||    
T  15724506 gattaggcgtgttttggtgtctgacacgtgttgtgtccgacaccgacacgacacc 15724560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 271
Target Start/End: Original strand, 5654503 - 5654568
Alignment:
Q  206 ctatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacat 271  Q
    ||||||||||| || ||| ||| |||||||||||||| |||||| || |||| |||||| ||||||    
T  5654503 ctatgaagcacaaatactcttcggattaggcgtattccggtgtcggatacgtatcgtgtccgacat 5654568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 308
Target Start/End: Original strand, 28000672 - 28000773
Alignment:
Q  208 atgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgaca-tcgacacgacaccaacacttgtaattacattaaatt 306  Q
    |||||||||| |||||  |||||||||| || |   ||||||||||||||||||||  | ||| | |||| |||||| ||||||||||||||| | ||||    
T  28000672 atgaagcacggacactcatcagattaggtgtgtctcggtgtcagacacgtgtcgtgaacaacacttgacatgacaccgacacttgtaattacactgaatt 28000771  T
Q  307 at 308  Q
    ||    
T  28000772 at 28000773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 308
Target Start/End: Complemental strand, 30838303 - 30838238
Alignment:
Q  243 tggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaattat 308  Q
    ||||||| ||||||||||| || |||||  ||||||||||| | |||| |||||||| ||||||||    
T  30838303 tggtgtcggacacgtgtcgcgtccgacactgacacgacaccgatacttataattacactaaattat 30838238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 341 - 373
Target Start/End: Complemental strand, 5111640 - 5111608
Alignment:
Q  341 tgtcaatgtccatgtcgtatccggtgtccgtgc 373  Q
    ||||| |||||||||||||||||||||||||||    
T  5111640 tgtcagtgtccatgtcgtatccggtgtccgtgc 5111608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 310
Target Start/End: Complemental strand, 13134532 - 13134476
Alignment:
Q  254 acgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaattatgt 310  Q
    |||||| ||||||||| ||||||||||| | |||| | |||||||| ||||||||||    
T  13134532 acgtgttgtgttcgacgtcgacacgacatcgacacatataattacactaaattatgt 13134476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 278 - 310
Target Start/End: Complemental strand, 44362724 - 44362692
Alignment:
Q  278 gacaccaacacttgtaattacattaaattatgt 310  Q
    ||||||||||||||| |||||||||||||||||    
T  44362724 gacaccaacacttgtgattacattaaattatgt 44362692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 206 - 310
Target Start/End: Original strand, 11223793 - 11223896
Alignment:
Q  206 ctatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaat 305  Q
    |||||||||||| |||||  ||||||||||||| | | ||||||||||| ||||||||| ||||| | ||| |||||| ||||||||||||||| | |||    
T  11223793 ctatgaagcacggacactcctcagattaggcgtgtcccggtgtcagaca-gtgtcgtgtccgacacctacatgacaccgacacttgtaattacactgaat 11223891  T
Q  306 tatgt 310  Q
    |||||    
T  11223892 tatgt 11223896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 205 - 308
Target Start/End: Complemental strand, 35056999 - 35056896
Alignment:
Q  205 gctatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaa 304  Q
    ||||||||||||| |||||  ||||||||||||| ||   ||||| |||||||||||||| ||||| |||||||||||| |||| | |||||||| | ||    
T  35056999 gctatgaagcacggacactcctcagattaggcgtgtttccgtgtcggacacgtgtcgtgtccgacaccgacacgacaccgacacatataattacactgaa 35056900  T
Q  305 ttat 308  Q
    ||||    
T  35056899 ttat 35056896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 205 - 310
Target Start/End: Original strand, 30717458 - 30717563
Alignment:
Q  205 gctatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaa 304  Q
    ||||||||||||| |||||  |  |||||||||||| |  |||||  ||||||||||||| ||||| |||||||||| | ||||||||||||||| | ||    
T  30717458 gctatgaagcacggacactccttggattaggcgtatcccagtgtcgaacacgtgtcgtgtccgacaacgacacgacatcgacacttgtaattacactgaa 30717557  T
Q  305 ttatgt 310  Q
    ||||||    
T  30717558 ttatgt 30717563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 251 - 372
Target Start/End: Complemental strand, 15657949 - 15657828
Alignment:
Q  251 gacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaattatgtaannnnnnnaaattagtagttgtgtcggcgtgtcaatgtc 350  Q
    ||||||||||| || ||||||| |||||||||| ||| ||||||||||| | |||||||| |       |||||| |||||| |||||||||| | ||||    
T  15657949 gacacgtgtcgcgtccgacatcaacacgacaccgacatttgtaattacactgaattatgtgatttttacaaattattagttgagtcggcgtgttagtgtc 15657850  T
Q  351 catgtcgtatccggtgtccgtg 372  Q
    | |||||| ||||||| |||||    
T  15657849 cgtgtcgtgtccggtgaccgtg 15657828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 278 - 380
Target Start/End: Original strand, 18841014 - 18841115
Alignment:
Q  278 gacaccaacacttgtaattacattaaattatgtaannnnnnnaaattagtagttgtgtcggcgtgtcaatgtccatgtcgtatccggtgtccgtgcttca 377  Q
    |||||| ||||||||||||||| | ||||||||||       |||||| |||||||||| |||||||| |||||||||||| ||| || | |||||||||    
T  18841014 gacaccgacacttgtaattacacttaattatgtaattttttcaaattattagttgtgtcagcgtgtcagtgtccatgtcgtgtcc-gtatacgtgcttca 18841112  T
Q  378 tag 380  Q
    |||    
T  18841113 tag 18841115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 206 - 299
Target Start/End: Complemental strand, 26769641 - 26769548
Alignment:
Q  206 ctatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattaca 299  Q
    |||||||||||| |||||  || |||||||||| | |  ||||| |||||||||||||| ||| | ||||| |||||| |||||||||||||||    
T  26769641 ctatgaagcacggacactcctcggattaggcgtgtcccagtgtcggacacgtgtcgtgtccgataccgacatgacaccgacacttgtaattaca 26769548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 206 - 299
Target Start/End: Complemental strand, 37419873 - 37419780
Alignment:
Q  206 ctatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattaca 299  Q
    |||||||||||| |||||  || |||||||||| | | |||||| ||||||  |||||| ||||| ||||||||||||  ||||||||||||||    
T  37419873 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgcatcgtgtccgacaccgacacgacaccggcacttgtaattaca 37419780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 320 - 371
Target Start/End: Original strand, 19536441 - 19536492
Alignment:
Q  320 aaattagtagttgtgtcggcgtgtcaatgtccatgtcgtatccggtgtccgt 371  Q
    |||||| ||||||||||||||||||| ||||| |||||| ||||||||||||    
T  19536441 aaattattagttgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgt 19536492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 277 - 368
Target Start/End: Complemental strand, 15972932 - 15972841
Alignment:
Q  277 cgacaccaacacttgtaattacattaaattatgtaannnnnnnaaattagtagttgtgtcggcgtgtcaatgtccatgtcgtatccggtgtc 368  Q
    ||||||| ||||||||||||||| | |||| |||||       |||||| || |||||||||||||||| ||||| ||||||||| ||||||    
T  15972932 cgacaccgacacttgtaattacactgaattgtgtaattttttcaaattattaattgtgtcggcgtgtcagtgtccgtgtcgtatctggtgtc 15972841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 277 - 368
Target Start/End: Complemental strand, 18422022 - 18421931
Alignment:
Q  277 cgacaccaacacttgtaattacattaaattatgtaannnnnnnaaattagtagttgtgtcggcgtgtcaatgtccatgtcgtatccggtgtc 368  Q
    ||||||| ||||||||||||||| | |||||||| |       |||||| || |||||||||||||||| ||||| ||||||||||| ||||    
T  18422022 cgacaccgacacttgtaattacactgaattatgtgatatttttaaattattaattgtgtcggcgtgtcagtgtccgtgtcgtatccgatgtc 18421931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 372
Target Start/End: Original strand, 34784950 - 34785077
Alignment:
Q  245 gtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaattatgtaannnnnnnaaattagtagttgtgtcggcgtgtc 344  Q
    |||||||||| ||||||||| ||| | |||||||||||| |||| | |||||||| |||||||||| |       |||  | |||||||||||| |||||    
T  34784950 gtgtcagacaggtgtcgtgtccgataccgacacgacaccgacacatataattacactaaattatgtgattttctaaaaaaattagttgtgtcggtgtgtc 34785049  T
Q  345 aatgtccatgtcgtatccggtgtccgtg 372  Q
    | ||||| |||||| || || |||||||    
T  34785050 agtgtccgtgtcgtgtctggggtccgtg 34785077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 283
Target Start/End: Original strand, 36096343 - 36096381
Alignment:
Q  245 gtgtcagacacgtgtcgtgttcgacatcgacacgacacc 283  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  36096343 gtgtcagacacgtgtcgtgtccgacatcgacacgacacc 36096381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 250 - 299
Target Start/End: Original strand, 18054776 - 18054825
Alignment:
Q  250 agacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattaca 299  Q
    ||||||| ||||||||||||| ||||||||||||||||| | ||||||||    
T  18054776 agacacgcgtcgtgttcgacaccgacacgacaccaacacatataattaca 18054825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 285 - 360
Target Start/End: Complemental strand, 6940306 - 6940231
Alignment:
Q  285 acacttgtaattacattaaattatgtaannnnnnnaaattagtagttgtgtcggcgtgtcaatgtccatgtcgtat 360  Q
    ||||||||||||||| | ||||||||||       |||||| ||| ||||||||||||||| ||||| ||||||||    
T  6940306 acacttgtaattacacttaattatgtaactttttaaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtat 6940231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 10535685 - 10535734
Alignment:
Q  206 ctatgaagcacgaacacttttcagattaggcgtattctggtgtcagacac 255  Q
    ||||||||||||||||||  || |||||||||| | ||||||||||||||    
T  10535685 ctatgaagcacgaacactcctcggattaggcgtgtcctggtgtcagacac 10535734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 310
Target Start/End: Complemental strand, 24067336 - 24067279
Alignment:
Q  253 cacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaattatgt 310  Q
    ||||||| |||| ||||| ||||| || |||||||||||| |||||||| ||||||||    
T  24067336 cacgtgttgtgtccgacaccgacatgaaaccaacacttgtgattacattgaattatgt 24067279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 369
Target Start/End: Complemental strand, 31018594 - 31018557
Alignment:
Q  332 gtgtcggcgtgtcaatgtccatgtcgtatccggtgtcc 369  Q
    |||| ||||||||| |||||||||||||||||||||||    
T  31018594 gtgttggcgtgtcagtgtccatgtcgtatccggtgtcc 31018557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 372
Target Start/End: Original strand, 34337230 - 34337271
Alignment:
Q  331 tgtgtcggcgtgtcaatgtccatgtcgtatccggtgtccgtg 372  Q
    ||||||||||||||||||||| |||||||| |||| ||||||    
T  34337230 tgtgtcggcgtgtcaatgtccgtgtcgtatacggtatccgtg 34337271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 205 - 269
Target Start/End: Original strand, 30404789 - 30404853
Alignment:
Q  205 gctatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgac 269  Q
    |||||||||||| ||| ||| ||||||||||| | | |||||||| |||| ||||||||| ||||    
T  30404789 gctatgaagcacaaacgcttctcagattaggcatgtcctggtgtcggacatgtgtcgtgtccgac 30404853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 272 - 371
Target Start/End: Complemental strand, 20236 - 20137
Alignment:
Q  272 cgacacgacaccaacacttgtaattacattaaattatgtaannnnnnnaaattagtagttgtgtcggcgtgtcaatgtccatgtcgtatccggtgtccgt 371  Q
    |||||||||||  ||||||||||||||| | |||||||| |       |||||| ||| ||||||||||||||| ||||| |||||| ||||||||||||    
T  20236 cgacacgacactgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgt 20137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 204 - 310
Target Start/End: Complemental strand, 3060 - 2954
Alignment:
Q  204 cgctatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaa 303  Q
    ||||||| |||||| |||||  || |||||||||| ||| ||||||  |||||||||||||  || | |||||||||||  | ||||||||||||| |||    
T  3060 cgctatggagcacggacactcctcggattaggcgtgttccggtgtcgaacacgtgtcgtgtctgataccgacacgacactgatacttgtaattacactaa 2961  T
Q  304 attatgt 310  Q
    |||||||    
T  2960 attatgt 2954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0623 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0623
Description:

Target: scaffold0623; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 299
Target Start/End: Original strand, 5964 - 6018
Alignment:
Q  245 gtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattaca 299  Q
    |||||||||||||||||||||||||| ||| |||||||| |||| | ||||||||    
T  5964 gtgtcagacacgtgtcgtgttcgacaccgatacgacaccgacacatataattaca 6018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 277 - 372
Target Start/End: Complemental strand, 8857 - 8762
Alignment:
Q  277 cgacaccaacacttgtaattacattaaattatgtaannnnnnnaaattagtagttgtgtcggcgtgtcaatgtccatgtcgtatccggtgtccgtg 372  Q
    ||||||| ||||||||||||||| ||||| || | |       |||||| ||| ||||||||||||||| ||||| |||||| |||||||||||||    
T  8857 cgacaccgacacttgtaattacactaaataatatgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtg 8762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 277
Target Start/End: Complemental strand, 70394 - 70326
Alignment:
Q  209 tgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacac 277  Q
    |||||||||||||||  || |||||||| | | |||||||| |||||||||||||| ||||| ||||||    
T  70394 tgaagcacgaacactcatcggattaggcatgtcctggtgtcggacacgtgtcgtgtccgacaccgacac 70326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 320 - 368
Target Start/End: Original strand, 178862 - 178910
Alignment:
Q  320 aaattagtagttgtgtcggcgtgtcaatgtccatgtcgtatccggtgtc 368  Q
    |||||| ||||||||||||||||||| ||||| |||||| |||||||||    
T  178862 aaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtc 178910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 371
Target Start/End: Complemental strand, 13416 - 13365
Alignment:
Q  320 aaattagtagttgtgtcggcgtgtcaatgtccatgtcgtatccggtgtccgt 371  Q
    |||||| ||||||||||||||||||| ||||| |||| | ||||||||||||    
T  13416 aaattattagttgtgtcggcgtgtcagtgtccgtgtcatctccggtgtccgt 13365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 371
Target Start/End: Original strand, 21911 - 21962
Alignment:
Q  320 aaattagtagttgtgtcggcgtgtcaatgtccatgtcgtatccggtgtccgt 371  Q
    |||||| ||||||||||||||||||| ||||| |||| | ||||||||||||    
T  21911 aaattattagttgtgtcggcgtgtcagtgtccgtgtcatctccggtgtccgt 21962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 229 - 283
Target Start/End: Original strand, 84925 - 84979
Alignment:
Q  229 gattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacacc 283  Q
    |||||||||| | ||| |||| ||||||||| |||||||||||||||| ||||||    
T  84925 gattaggcgtgtcctgttgtcggacacgtgttgtgttcgacatcgacatgacacc 84979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 372
Target Start/End: Complemental strand, 9903 - 9862
Alignment:
Q  331 tgtgtcggcgtgtcaatgtccatgtcgtatccggtgtccgtg 372  Q
    ||||||||||||||  |||||||||||| |||||||||||||    
T  9903 tgtgtcggcgtgtcggtgtccatgtcgtgtccggtgtccgtg 9862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 299
Target Start/End: Complemental strand, 71855 - 71762
Alignment:
Q  206 ctatgaagcacgaacacttttcagattaggcgtattctggtgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattaca 299  Q
    |||||||||||  |||||  || |||||| ||| | | |||||| ||||||||| |||| ||||| |||||||||||  ||||| |||||||||    
T  71855 ctatgaagcaccgacactcctcggattagtcgtgtcccggtgtcggacacgtgttgtgtccgacaccgacacgacactgacactagtaattaca 71762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 372
Target Start/End: Original strand, 225322 - 225363
Alignment:
Q  331 tgtgtcggcgtgtcaatgtccatgtcgtatccggtgtccgtg 372  Q
    ||||||||||||||| ||||| |||||| |||||||||||||    
T  225322 tgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtg 225363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 246 - 310
Target Start/End: Original strand, 3818 - 3882
Alignment:
Q  246 tgtcagacacgtgtcgtgttcgacatcgacacgacaccaacacttgtaattacattaaattatgt 310  Q
    |||| |||| ||||||||| ||||| | |||||||||  ||||||||||||||| | ||||||||    
T  3818 tgtcggacatgtgtcgtgtccgacaccaacacgacactgacacttgtaattacactgaattatgt 3882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 332 - 372
Target Start/End: Complemental strand, 8670 - 8630
Alignment:
Q  332 gtgtcggcgtgtcaatgtccatgtcgtatccggtgtccgtg 372  Q
    |||||| ||||||| |||||||||||| |||||||||||||    
T  8670 gtgtcgacgtgtcagtgtccatgtcgtgtccggtgtccgtg 8630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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