View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6962_low_6 (Length: 545)
Name: NF6962_low_6
Description: NF6962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6962_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-119; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 306 - 535
Target Start/End: Complemental strand, 36585842 - 36585613
Alignment:
| Q |
306 |
catctatatgaatttaatctcagattttgaagacatgagttgtgatatggtttatggccaaactccgccttcatttgaagacgacccagtctccaaacaa |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36585842 |
catctatatgaatttaatctcagattttgaagacatgagttgtgatatggtttatggccaaactccgccttcatttgaagacgacccagtctccaaacaa |
36585743 |
T |
|
| Q |
406 |
ccttgctatgctgatatatgtaagcatggtccttcttttgtgttcaattcaatcaaccaaaagatttatatattctaacacaaaaataacttgcaggttc |
505 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
36585742 |
ccttgctatgctgatatatgtaagcatggtcctccttttgtgttcaattcaatcaaccaaaagatttatatattctaacacaaaaataacttgcaggtcc |
36585643 |
T |
|
| Q |
506 |
tgtagcgaatccaaactccagtagatgtcc |
535 |
Q |
| |
|
||||||||||||||||||||||| |||||| |
|
|
| T |
36585642 |
tgtagcgaatccaaactccagtatatgtcc |
36585613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 36586146 - 36585899
Alignment:
| Q |
1 |
tatggccttctaatgaatttttgttgattttgtttatattannnnnnncttggtcaggtacctggagaacagtggatgtgttggacagtgtgttaatatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36586146 |
tatggccttctaatgaatttttgttgattttgtttatatt-tttttttcttgttcaggtacctggagaacagtggatgtgttggacagtgtgttaatatg |
36586048 |
T |
|
| Q |
101 |
tgcaagattcctacccaagattttttcactaatgaatttggacttccattaacaatgattccaagtatgtcttcttgtctttcataacaagacaaaagtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36586047 |
tgcaagattcctacccaagattttttcactaatgaatttggacttccattaacaatgattccaagtatgtcttcttgtctttcataacaagacaaaagtt |
36585948 |
T |
|
| Q |
201 |
cttctagttcacattctttacaataatgactaaagtatgacttgaccaa |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36585947 |
cttctagttcacattctttacaataatgactaaagtatgacttgaccaa |
36585899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 370 - 527
Target Start/End: Original strand, 40853489 - 40853642
Alignment:
| Q |
370 |
ccgccttcatttgaagacgacccagtctccaaa-caaccttgctatgctgatatatgtaagcatggtccttcttttgtgttcaattcaatcaaccaaaag |
468 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||| ||| |||| |||||||| || |||||||| |||| |
|
|
| T |
40853489 |
ccgccttcatttgaatacgacccagtctccaaaacaaccttgctatgctgatatttgtaagtatgatcctccttttgtg-----ttgaatcaacccaaag |
40853583 |
T |
|
| Q |
469 |
atttatatattctaacacaaaaataacttgcaggttctgtagcgaatccaaactccagt |
527 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
40853584 |
atttttatattctaacacaaaaataacttgcagattctgtagcaaatccaaactccagt |
40853642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 5e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 370 - 527
Target Start/End: Original strand, 32178570 - 32178723
Alignment:
| Q |
370 |
ccgccttcatttgaagacgacccagtctccaaa-caaccttgctatgctgatatatgtaagcatggtccttcttttgtgttcaattcaatcaaccaaaag |
468 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||| ||| |||| |||||||| || |||||||| |||| |
|
|
| T |
32178570 |
ccgccttcatttgaatacgacccagtctccaaaacaaccttgctatgctgatatttgtaagtatgatcctccttttgtg-----ttgaatcaacccaaag |
32178664 |
T |
|
| Q |
469 |
atttatatattctaacacaaaaataacttgcaggttctgtagcgaatccaaactccagt |
527 |
Q |
| |
|
|||| ||||||||||||||||||||||||| || || |||||| ||||||||||||||| |
|
|
| T |
32178665 |
atttttatattctaacacaaaaataacttgtagattttgtagcaaatccaaactccagt |
32178723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University