View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6962_low_7 (Length: 545)

Name: NF6962_low_7
Description: NF6962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6962_low_7
NF6962_low_7
[»] chr8 (2 HSPs)
chr8 (13-529)||(15755486-15756014)
chr8 (23-348)||(18945565-18945889)
[»] scaffold0384 (1 HSPs)
scaffold0384 (13-393)||(972-1352)
[»] chr6 (9 HSPs)
chr6 (294-531)||(17118244-17118497)
chr6 (216-393)||(17118516-17118693)
chr6 (20-327)||(13139393-13139713)
chr6 (265-375)||(6340628-6340738)
chr6 (397-531)||(13139790-13139924)
chr6 (444-506)||(26628696-26628758)
chr6 (444-506)||(26734672-26734734)
chr6 (183-249)||(20071689-20071755)
chr6 (26-135)||(17118711-17118820)
[»] chr4 (3 HSPs)
chr4 (145-378)||(17127986-17128219)
chr4 (35-378)||(19805856-19806199)
chr4 (306-358)||(16985044-16985096)
[»] chr2 (3 HSPs)
chr2 (101-376)||(13129009-13129284)
chr2 (265-375)||(28015657-28015767)
chr2 (265-375)||(20485423-20485533)
[»] chr3 (2 HSPs)
chr3 (101-357)||(55308395-55308651)
chr3 (268-376)||(8834467-8834575)
[»] chr5 (2 HSPs)
chr5 (101-376)||(26470317-26470592)
chr5 (101-378)||(16992425-16992702)


Alignment Details
Target: chr8 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 13 - 529
Target Start/End: Complemental strand, 15756014 - 15755486
Alignment:
Q  13 aacctgtgttttcacaactccaaaattatcattcaaactagtgagaaattgaatgatttggtcctccaaatgaaaattttgagctgatcgcatggattca 112  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||    
T  15756014 aacctgtgttttcacaactccaaaattatcattcaaaccagtgagaaattgaatgatttggtcctccaaacgaaaatttcgagctgatctcatggattca 15755915  T
Q  113 cagcgacagggatgaggacaagttcatatagtcataggacgatgaaaattaagctcttcccaaagcgatttcaactcagtgaagtattcaagcacaaaat 212  Q
    || |||||||||||||||||||| || |||| |||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |    
T  15755914 caacgacagggatgaggacaagtgcacataggcataggacaatgagaattaagctcttcccaaagtgatttcaactcagtgaagtattcaagcacaaact 15755815  T
Q  213 tggttccttgtttcaaattgttgatagcagtacgtaatgaagaaattctgactctatcaaccttagaaaagcgttcttgaagctcaatccatacatcaat 312  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15755814 tggttccttgtttcaaattgttgatagtagtacataatgaagaaattctgactctatcaaccttagaaaagcgttcttgaagctcaatccatacatcaat 15755715  T
Q  313 ggcgtattcatgaaatacgatggtttgagcgatttgaggagaaacaaaatccagaatccaagaatggagcaagtagttacaacg---------------- 396  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||| |||| ||||||||||                    
T  15755714 ggcgtattcatgaaatacgatggtttgagcgatttaaggagaaacagaattcagaatccaagaatggatcaaggagttacaacgttcccaaacacttcga 15755615  T
Q  397 ttcaaatcatcaagaggagggattgagatagatccatcaacaaaggaaagcttgttcttggcgcctaaagcgcatttcatagaacgatgccatgcgaggt 496  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||    ||||||    
T  15755614 ttcaaatcatcaagaggagggattaggatagatccatcaacaaaggaaagcttgttcttggcgcctaaagcgcgtttcatagaatgatgc----cgaggt 15755519  T
Q  497 agttagaaccgtcaagaagaggcgtaactaaca 529  Q
    |||||||||||||||||||||| ||||||||||    
T  15755518 agttagaaccgtcaagaagaggtgtaactaaca 15755486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 23 - 348
Target Start/End: Original strand, 18945565 - 18945889
Alignment:
Q  23 ttcacaactccaaaattatcattcaaactagtgagaaattgaatgatttggtcctccaaatgaaaattttgagctgatcgcatggattcacagcgacagg 122  Q
    |||||||||  |||||| |||||||||| ||||||||||||||| | ||| || ||||    ||||||  |||| |  |||||||||||||| || || |    
T  18945565 ttcacaactgaaaaattgtcattcaaaccagtgagaaattgaatcacttgatcttccattctaaaattgcgagcagtacgcatggattcacaacggcatg 18945664  T
Q  123 gatgaggacaagttcatatagtcataggacgatgaaaattaagctcttcccaaagcgatttcaactcagtgaagtattcaagcacaaaattggttccttg 222  Q
    ||| ||||||||| || |||| ||| ||| ||||| | |||||||| |||||||| ||||||| ||| |||||||| |||||  || | ||    || ||    
T  18945665 gataaggacaagtacacataggcatggga-gatgagagttaagctcctcccaaagggatttcatctctgtgaagtaatcaagttcagatttatcaccctg 18945763  T
Q  223 tttcaaattgttgatagcagtacgtaatgaagaaattctgactctatcaaccttagaaaagcgttcttgaagctcaatccatacatcaatggcgtattca 322  Q
    ||||||||||||||| | || ||| | ||||| ||  |  | || ||||||||| ||||| ||||||||    |||||||| |||||||||  ||| |||    
T  18945764 tttcaaattgttgattgaagaacgaagtgaagcaacacaaattcgatcaaccttcgaaaaacgttcttgtgattcaatccaaacatcaatgttgtactca 18945863  T
Q  323 tgaaatacgatggtttgagcgatttg 348  Q
    ||||| || || |||||||| |||||    
T  18945864 tgaaacacaatagtttgagcaatttg 18945889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0384 (Bit Score: 161; Significance: 1e-85; HSPs: 1)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 13 - 393
Target Start/End: Complemental strand, 1352 - 972
Alignment:
Q  13 aacctgtgttttcacaactccaaaattatcattcaaactagtgagaaattgaatgatttggtcctccaaatgaaaattttgagctgatcgcatggattca 112  Q
    |||||| ||||||||||||||||| || |||||||||| ||| || |||||||| | ||||||||||||| |||| | | | | ||| | ||| ||||||    
T  1352 aacctgagttttcacaactccaaagttgtcattcaaaccagttaggaattgaatcacttggtcctccaaacgaaattctcgtgttgacctcatagattca 1253  T
Q  113 cagcgacagggatgaggacaagttcatatagtcataggacgatgaaaattaagctcttcccaaagcgatttcaactcagtgaagtattcaagcacaaaat 212  Q
    || ||| |||||||||||||||| || | || |||||| |||||  |||| |||||||||||||| ||||||| |||||||||||||||||||||||| |    
T  1252 caacgatagggatgaggacaagtacacacaggcatagggcgatgggaattgagctcttcccaaagagatttcatctcagtgaagtattcaagcacaaact 1153  T
Q  213 tggttccttgtttcaaattgttgatagcagtacgtaatgaagaaattctgactctatcaaccttagaaaagcgttcttgaagctcaatccatacatcaat 312  Q
    | |||| ||||||||||||||||||||  | ||||||||||| |||| ||| | ||||||| || || || |||||||||||||||||||| ||||||||    
T  1152 ttgttcgttgtttcaaattgttgatagatgaacgtaatgaagcaattatgattatatcaactttggagaaacgttcttgaagctcaatccaaacatcaat 1053  T
Q  313 ggcgtattcatgaaatacgatggtttgagcgatttgaggagaaacaaaatccagaatccaagaatggagcaagtagttaca 393  Q
    ||| ||||||||||||||||| |||||||| ||||| |||||||||||||  |  ||||||||||| | || |||||||||    
T  1052 ggcatattcatgaaatacgatagtttgagcaatttgtggagaaacaaaattgatgatccaagaatgaaccatgtagttaca 972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 1e-39; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 294 - 531
Target Start/End: Complemental strand, 17118497 - 17118244
Alignment:
Q  294 gctcaatccatacatcaatggcgtattcatgaaatacgatggtttgagcgatttgaggagaaacaaaatccagaatccaagaatggagcaagtagttaca 393  Q
    |||||||||||||||||||||  |||||||| ||||| || || ||||| ||||||||||||||| | | || ||||||| |||||| || |||||||||    
T  17118497 gctcaatccatacatcaatggtatattcatggaatactatagtctgagcaatttgaggagaaacagagttcaaaatccaaaaatggatcaggtagttaca 17118398  T
Q  394 ---------------acg-ttcaaatcatcaagaggagggattgagatagatccatcaacaaaggaaagcttgttcttggcgcctaaagcgcatttcata 477  Q
                   ||| ||||||||||||| |||||||||||  || |||||||||||||||||||| |||||||| || ||||| | ||  ||||||    
T  17118397 gtgttcccaagcactacggttcaaatcatcaataggagggattggaattgatccatcaacaaaggaaagtttgttcttcgctcctaatgggcgcttcata 17118298  T
Q  478 gaacgatgccatgcgaggtagttagaaccgtcaagaagaggcgtaactaacaca 531  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||    
T  17118297 gaacgatgccatgcgaggtagttagaaccatcaagaagaggtgtaactatcaca 17118244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 216 - 393
Target Start/End: Complemental strand, 17118693 - 17118516
Alignment:
Q  216 ttccttgtttcaaattgttgatagcagtacgtaatgaagaaattctgactctatcaaccttagaaaagcgttcttgaagctcaatccatacatcaatggc 315  Q
    ||||||| ||||| ||||| ||  ||| | |||| ||||||||| | |||||| |||||||||| | |||||||||||||||||||||||||||||||||    
T  17118693 ttccttgcttcaagttgttaatgacagaatgtaaagaagaaattattactctaccaaccttagagaggcgttcttgaagctcaatccatacatcaatggc 17118594  T
Q  316 gtattcatgaaatacgatggtttgagcgatttgaggagaaacaaaatccagaatccaagaatggagcaagtagttaca 393  Q
    ||||||||| ||||| || || ||||| |||||| |||||||| | | || |||||||||||||| || |||||||||    
T  17118593 gtattcatggaatactatagtctgagcaatttgacgagaaacagagttcaaaatccaagaatggatcaggtagttaca 17118516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 20 - 327
Target Start/End: Original strand, 13139393 - 13139713
Alignment:
Q  20 gttttcacaactccaaaattatcattcaaactagtgagaaattgaatgatttggtcctccaaatgaaaattttgagctgatcgcatggattcacagcgac 119  Q
    ||||||| |||||||||||| ||||||||   ||||||||| |||||||  ||  |||| ||| ||||||| ||| | |||| |||||||||||| ||||    
T  13139393 gttttcataactccaaaattctcattcaagtcagtgagaaactgaatgacctgaacctctaaacgaaaattatgaaccgatctcatggattcacaacgac 13139492  T
Q  120 agggatgaggacaagttcatatagtcataggacgatgaaaattaagctcttcccaaagcgatttcaactcagtgaagtattcaagcacaaaattggttcc 219  Q
    | ||||||||| |||| || ||||  || || |||||| |||| || ||||  ||||| |||| || |||||| ||||| ||||||||| | || |||||    
T  13139493 aaggatgaggataagtgcacataggtattgggcgatgagaattgagttcttaacaaagagattacatctcagtaaagtaatcaagcacatattttgttcc 13139592  T
Q  220 ttgtttcaaattgttgatagcagtacgta----at----------gaagaaattctgactctatcaaccttagaaaagcgttcttgaagctcaatccata 305  Q
    ||||||||| ||||||| |||| | | ||    ||          |||| |||||| ||||||||||| ||||| || |||||||||||||||||||| |    
T  13139593 ttgtttcaagttgttga-agcaattcttaccctatcaacattagagaagcaattcttactctatcaacattagagaaacgttcttgaagctcaatccaga 13139691  T
Q  306 catcaatggcgtattcatgaaa 327  Q
    || |||||| ||||||||||||    
T  13139692 caacaatggtgtattcatgaaa 13139713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 265 - 375
Target Start/End: Complemental strand, 6340738 - 6340628
Alignment:
Q  265 tctatcaaccttagaaaagcgttcttgaagctcaatccatacatcaatggcgtattcatgaaatacgatggtttgagcgatttgaggagaaacaaaatcc 364  Q
    ||||||||| |||||||| || ||||||||||||||||| |||||||||||| |||||||||| || || ||||| || |||||  |||||||| ||| |    
T  6340738 tctatcaactttagaaaaacgctcttgaagctcaatccaaacatcaatggcgaattcatgaaaaacaattgtttgtgcaatttgcagagaaacagaattc 6340639  T
Q  365 agaatccaaga 375  Q
    | |||||||||    
T  6340638 aaaatccaaga 6340628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 397 - 531
Target Start/End: Original strand, 13139790 - 13139924
Alignment:
Q  397 ttcaaatcatcaagaggagggattgagatagatccatcaacaaaggaaagcttgttcttggcgcctaaagcgcatttcatagaacgatgccatgcgaggt 496  Q
    ||||||||||||  |||||||||||  || ||||||||||||||   ||| |||||||| || || ||  | |  |||||||||||||  ||||||||||    
T  13139790 ttcaaatcatcagcaggagggattggaattgatccatcaacaaaatcaagtttgttcttcgctcccaactcacgcttcatagaacgatttcatgcgaggt 13139889  T
Q  497 agttagaaccgtcaagaagaggcgtaactaacaca 531  Q
    |||| ||||| ||||||||||||||||||| ||||    
T  13139890 agttggaaccatcaagaagaggcgtaactagcaca 13139924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 444 - 506
Target Start/End: Complemental strand, 26628758 - 26628696
Alignment:
Q  444 aagcttgttcttggcgcctaaagcgcatttcatagaacgatgccatgcgaggtagttagaacc 506  Q
    |||||| |||||||| |||||||| | || ||||||||||  |||||||||||||||||||||    
T  26628758 aagcttattcttggcacctaaagcacgttgcatagaacgactccatgcgaggtagttagaacc 26628696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 444 - 506
Target Start/End: Complemental strand, 26734734 - 26734672
Alignment:
Q  444 aagcttgttcttggcgcctaaagcgcatttcatagaacgatgccatgcgaggtagttagaacc 506  Q
    |||||| |||||||| |||||||| | || ||||||||||  |||||||||||||||||||||    
T  26734734 aagcttattcttggcacctaaagcacgttgcatagaacgactccatgcgaggtagttagaacc 26734672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 183 - 249
Target Start/End: Complemental strand, 20071755 - 20071689
Alignment:
Q  183 tcaactcagtgaagtattcaagcacaaaattggttccttgtttcaaattgttgatagcagtacgtaa 249  Q
    |||||||||||||||| |||||||||||||| ||  |||||||||| ||  |||||| || ||||||    
T  20071755 tcaactcagtgaagtagtcaagcacaaaatttgtatcttgtttcaacttactgatagaagaacgtaa 20071689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 135
Target Start/End: Complemental strand, 17118820 - 17118711
Alignment:
Q  26 acaactccaaaattatcattcaaactagtgagaaattgaatgatttggtcctccaaatgaaaattttgagctgatcgcatggattcacagcgacagggat 125  Q
    |||||| ||||| |||||||||| | ||| | ||| ||||||| ||  |||||||||  ||||||  |||| |||| |||||||||||| ||||| || |    
T  17118820 acaacttcaaaagtatcattcaagcgagtcaaaaactgaatgacttcatcctccaaacaaaaattgcgagccgatctcatggattcacaacgacaagggt 17118721  T
Q  126 gaggacaagt 135  Q
    ||| ||||||    
T  17118720 gagcacaagt 17118711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 6e-29; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 145 - 378
Target Start/End: Complemental strand, 17128219 - 17127986
Alignment:
Q  145 cataggacgatgaaaattaagctcttcccaaagcgatttcaactcagtgaagtattcaagcacaaaattggttccttgtttcaaattgttgatagcagta 244  Q
    |||||| |||||  |||| ||||| |||||||| || |||| ||  |||||||| |||||||||   || || |||||||| | ||||||||| | || |    
T  17128219 catagggcgatgtgaattgagctcctcccaaagagacttcatctatgtgaagtaatcaagcacagtcttagtaccttgtttaagattgttgattgtagaa 17128120  T
Q  245 cgtaatgaagaaattctgactctatcaaccttagaaaagcgttcttgaagctcaatccatacatcaatggcgtattcatgaaatacgatggtttgagcga 344  Q
    || |  | || ||| |  ||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||| || |||||||| || |    
T  17128119 cgaagagtagcaatacgaactctatcaaccttagagaagagttcttgaagctcaatccagacatcaatggcgtattcatgaaaaacaatggtttgcgcaa 17128020  T
Q  345 tttgaggagaaacaaaatccagaatccaagaatg 378  Q
    |||| | ||||||| | | ||||||||| |||||    
T  17128019 tttgtgcagaaacatagttcagaatccaggaatg 17127986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 35 - 378
Target Start/End: Original strand, 19805856 - 19806199
Alignment:
Q  35 aaattatcattcaaactagtgagaaattgaatgatttggtcctccaaatgaaaattttgagctgatcgcatggattcacagcgacagggatgaggacaag 134  Q
    |||||||||||||| ||||||||||||||||| | ||  || ||||  ||||| | || ||| |  ||||  || ||||||||||| ||||  |||||||    
T  19805856 aaattatcattcaatctagtgagaaattgaatcacttaatcttccatgtgaaattctttagcagcacgcacagactcacagcgacatggatagggacaag 19805955  T
Q  135 ttcatatagtcataggacgatgaaaattaagctcttcccaaagcgatttcaactcagtgaagtattcaagcacaaaattggttccttgtttcaaattgtt 234  Q
    | |||  || |||||| |||||  |||| ||||| |||||||| ||||||| ||| |||||||| ||||| | | | || || |||||||  | ||||||    
T  19805956 tgcatgcaggcatagggcgatgtgaattgagctcctcccaaagagatttcatctctgtgaagtaatcaagaatagacttagtaccttgttaaagattgtt 19806055  T
Q  235 gatagcagtacgtaatgaagaaattctgactctatcaaccttagaaaagcgttcttgaagctcaatccatacatcaatggcgtattcatgaaatacgatg 334  Q
    ||| | || | | |  | || |||    ||||| | |||||| ||||| | || ||||||||||||||| ||||||||||||||||||||||| ||  ||    
T  19806056 gattgtagaatgaagagtagcaatatgaactctgtgaacctttgaaaaacatttttgaagctcaatccaaacatcaatggcgtattcatgaaaaacagtg 19806155  T
Q  335 gtttgagcgatttgaggagaaacaaaatccagaatccaagaatg 378  Q
    ||||| || ||||| ||||||||  | | || ||||||||||||    
T  19806156 gtttgcgcaatttgtggagaaactgagttcaaaatccaagaatg 19806199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 306 - 358
Target Start/End: Complemental strand, 16985096 - 16985044
Alignment:
Q  306 catcaatggcgtattcatgaaatacgatggtttgagcgatttgaggagaaaca 358  Q
    |||||||||||| ||||||||| ||||  |||||||| |||||||| ||||||    
T  16985096 catcaatggcgttttcatgaaaaacgagagtttgagcaatttgaggtgaaaca 16985044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 3e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 101 - 376
Target Start/End: Complemental strand, 13129284 - 13129009
Alignment:
Q  101 cgcatggattcacagcgacagggatgaggacaagttcatatagtcataggacgatgaaaattaagctcttcccaaagcgatttca-actcagtgaagtat 199  Q
    |||||||||||||| || || |||| ||||||||| || |||| ||| ||||||||| ||||||| || |||||||| ||||| | |||  ||||||||     
T  13129284 cgcatggattcacaacggcaaggataaggacaagtacacataggcatgggacgatgagaattaagttcctcccaaagagattttatactt-gtgaagtaa 13129186  T
Q  200 tcaagcacaaaattggttccttgtttcaaattgttgatagcagtacgtaatgaagaaattctgactctatcaaccttagaaaagcgttcttgaagctcaa 299  Q
    ||||| ||| | ||    ||||||||||||||||| || | || ||||| ||||| ||  |  |  | ||||||||||||||| || ||||| |  ||||    
T  13129185 tcaagaacagatttatcaccttgtttcaaattgttaatggaagaacgtagtgaagcaacacgaatacgatcaaccttagaaaaacgctcttgtaattcaa 13129086  T
Q  300 tccatacatcaatggcgtattcatgaaatacgatggtttgagcgatttgaggagaaacaaaatccagaatccaagaa 376  Q
    |||| |||||||||||||||||||| ||||| || |||||||| ||||||||||||||| |||  | ||||||||||    
T  13129085 tccagacatcaatggcgtattcatggaatacaatagtttgagcaatttgaggagaaacagaattaataatccaagaa 13129009  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 265 - 375
Target Start/End: Complemental strand, 28015767 - 28015657
Alignment:
Q  265 tctatcaaccttagaaaagcgttcttgaagctcaatccatacatcaatggcgtattcatgaaatacgatggtttgagcgatttgaggagaaacaaaatcc 364  Q
    ||||||||| |||||||| || ||||||||||||||||| |||||||||||| |||||||||| || || ||||| || |||||  |||||||| ||| |    
T  28015767 tctatcaactttagaaaaacgctcttgaagctcaatccaaacatcaatggcgaattcatgaaaaacaattgtttgtgcaatttgcagagaaacagaattc 28015668  T
Q  365 agaatccaaga 375  Q
    | |||||||||    
T  28015667 aaaatccaaga 28015657  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 265 - 375
Target Start/End: Original strand, 20485423 - 20485533
Alignment:
Q  265 tctatcaaccttagaaaagcgttcttgaagctcaatccatacatcaatggcgtattcatgaaatacgatggtttgagcgatttgaggagaaacaaaatcc 364  Q
    ||||||||| |||||||| || |  |||||||||||||| |||||||||||| |||||||||| || || ||||| || |||||  |||||||| ||| |    
T  20485423 tctatcaactttagaaaaacgcttctgaagctcaatccaaacatcaatggcgaattcatgaaaaacaattgtttgtgcaatttgcagagaaacagaattc 20485522  T
Q  365 agaatccaaga 375  Q
    | |||||||||    
T  20485523 aaaatccaaga 20485533  T

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Target: chr3 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 101 - 357
Target Start/End: Complemental strand, 55308651 - 55308395
Alignment:
Q  101 cgcatggattcacagcgacagggatgaggacaagttcatatagtcataggacgatgaaaattaagctcttcccaaagcgatttcaactcagtgaagtatt 200  Q
    |||||||||||||| || || |||| ||||||||| || |||| ||| ||||||||| ||||||| || ||||| || ||||| | ||| |||||||| |    
T  55308651 cgcatggattcacaacggcaaggataaggacaagtacacataggcatgggacgatgagaattaagttcctcccatagagatttgatctctgtgaagtaat 55308552  T
Q  201 caagcacaaaattggttccttgtttcaaattgttgatagcagtacgtaatgaagaaattctgactctatcaaccttagaaaagcgttcttgaagctcaat 300  Q
    |||| ||| | ||    |||||||||| |||||| || | || ||||| ||||| ||  |  |  | ||||||||||||||| || ||||| |  |||||    
T  55308551 caagaacagatttatcaccttgtttcagattgttaatggaagaacgtagtgaagcaacacgaatacgatcaaccttagaaaaacgctcttgcaattcaat 55308452  T
Q  301 ccatacatcaatggcgtattcatgaaatacgatggtttgagcgatttgaggagaaac 357  Q
    ||| |||||||||||| |||||||||| || || |||||||| ||||||||||||||    
T  55308451 ccaaacatcaatggcggattcatgaaagacaatagtttgagcaatttgaggagaaac 55308395  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 268 - 376
Target Start/End: Complemental strand, 8834575 - 8834467
Alignment:
Q  268 atcaaccttagaaaagcgttcttgaagctcaatccatacatcaatggcgtattcatgaaatacgatggtttgagcgatttgaggagaaacaaaatccaga 367  Q
    ||||||||||||||| || ||||| |  |||||||| |||||||||||| |||||||||| || || |||||||| ||||||||||||||| |||  | |    
T  8834575 atcaaccttagaaaaacgctcttgcaattcaatccaaacatcaatggcggattcatgaaagacaatagtttgagcaatttgaggagaaacataattaata 8834476  T
Q  368 atccaagaa 376  Q
    |||||||||    
T  8834475 atccaagaa 8834467  T

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Target: chr5 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 101 - 376
Target Start/End: Complemental strand, 26470592 - 26470317
Alignment:
Q  101 cgcatggattcacagcgacagggatgaggacaagttcatatagtcataggacgatgaaaattaagctcttcccaaagcgatttcaactcagtgaagtatt 200  Q
    |||||||||||||| || || |||| ||||||||| || |||| ||| ||||||||| ||||||| || ||||| || ||||| | ||| |||||||| |    
T  26470592 cgcatggattcacaacggcaaggataaggacaagtacacataggcatgggacgatgagaattaagttcctcccatagagatttgatctctgtgaagtaat 26470493  T
Q  201 caagcacaaaattggttccttgtttcaaattgttgatagcagtacgtaatgaagaaattctgactctatcaaccttagaaaagcgttcttgaagctcaat 300  Q
    |||| ||| | ||    |||||||||| |||||| || | || ||| | ||||| ||  |  |  | ||||||||||||||| || ||||| |  |||||    
T  26470492 caagaacagatttatcaccttgtttcagattgttaatggaagaacgcagtgaagcaacacgaatacgatcaaccttagaaaaacgctcttgcaattcaat 26470393  T
Q  301 ccatacatcaatggcgtattcatgaaatacgatggtttgagcgatttgaggagaaacaaaatccagaatccaagaa 376  Q
    ||| |||||||||||| |||||||||| |  || |||||||| ||||||||||||||| |||  | ||||||||||    
T  26470392 ccagacatcaatggcggattcatgaaagataatagtttgagcaatttgaggagaaacagaattaataatccaagaa 26470317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 101 - 378
Target Start/End: Original strand, 16992425 - 16992702
Alignment:
Q  101 cgcatggattcacagcgacagggatgaggacaagttcatatagtcataggacgatgaaaattaagctcttcccaaagcgatttcaactcagtgaagtatt 200  Q
    ||||| |||||||| || || ||||| |||||||| || |||| ||||||||||||  |||| ||||| |||||||| ||||||| ||| ||||| || |    
T  16992425 cgcatagattcacaacggcatggatgtggacaagtgcacataggcataggacgatgtgaattgagctcctcccaaagagatttcatctctgtgaaatagt 16992524  T
Q  201 caagcacaaaattggttccttgtttcaaattgttgatagcagtacgtaatgaagaaattctgactctatcaaccttagaaaagcgttcttgaagctcaat 300  Q
    |||| ||| | || |  |||||||| | ||| ||||| | ||  || |  ||||  || |  | ||||||||| |||||||| || || |||||||||||    
T  16992525 caaggacagatttagcaccttgtttgagattattgatggaagagcgaagagaagcgatacgaattctatcaactttagaaaaacgctcctgaagctcaat 16992624  T
Q  301 ccatacatcaatggcgtattcatgaaatacgatggtttgagcgatttgaggagaaacaaaatccagaatccaagaatg 378  Q
    ||| |||||||||||| |||| ||||| || || ||||| || |||||  |||||||| | | || ||||||||||||    
T  16992625 ccaaacatcaatggcgaattcgtgaaaaacaattgtttgtgcaatttgcagagaaacagagttcaaaatccaagaatg 16992702  T

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