View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6962_low_8 (Length: 531)
Name: NF6962_low_8
Description: NF6962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6962_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 17 - 284
Target Start/End: Complemental strand, 28111182 - 28110915
Alignment:
| Q |
17 |
aaatgactttatttttaaaaattctccttttggtattgacgacatggtggaggatattaaggtgttagcatggaggtgggttttgagtcgtttgaagttg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28111182 |
aaatgactttatttttaaaaattctccttttggtattgacgacatggtggaggatattaaggtgttagcatggaggtgggttttgagtcgtttgaagttg |
28111083 |
T |
|
| Q |
117 |
ccggtttgtttgtattatgaatggacgtggaatccacaagcgtgtttggtgcggtaatggtggatttttgggccttttagatgggcgttgaggctttggt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
28111082 |
ccggtttgtttgtattatgaatggacgtggaatccacaagcgtgtttggtgcggtaatggtggatttttgggccttttaggtgggcgttgaggctttggt |
28110983 |
T |
|
| Q |
217 |
atgctgctgctctgctgttttggctaggagtatatgacagcctcattgctgtcctgcttctttgcacc |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28110982 |
atgctgctgctctgctgttttggctaggagtatatgacagcctcattgctgtcctgcttctttgcacc |
28110915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 285 - 514
Target Start/End: Complemental strand, 40383213 - 40382985
Alignment:
| Q |
285 |
agacggagagagtatttgatacatttatatattcnnnnnnntaaattaataatagttatacacaaaaggtacataaaacgatacttcttatgctaaataa |
384 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40383213 |
agacggagagagtatttgatacatttatatattcaaaaaaataaattaataatagttatacacaaaaggtacataaaacgatacttcttatgctaaataa |
40383114 |
T |
|
| Q |
385 |
caaagatgcttcctatattagtgataacttgaattattaaaccataaacagacgatactccctatgctacataacatacatgctgccaatgggatagaca |
484 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||| |
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| T |
40383113 |
-aaagatgcttcctatgttagtgataacttgaattattaaactataaacagatgatactccctatgctacataacatacatgctgccgatgcgatagaca |
40383015 |
T |
|
| Q |
485 |
tttgtgagaacatctttacacatgagtaat |
514 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |
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|
| T |
40383014 |
tttgtgagaacatcttcacacatgagtaat |
40382985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 27 - 99
Target Start/End: Original strand, 15559086 - 15559158
Alignment:
| Q |
27 |
atttttaaaaattctccttttggtattgacgacatggtggaggatattaaggtgttagcatggaggtgggttt |
99 |
Q |
| |
|
|||||||| |||||||||||||| |||||||| ||||||||||| |||||| ||||||| ||||||||||||| |
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|
| T |
15559086 |
atttttaataattctccttttggcattgacgagatggtggaggacattaagttgttagcgtggaggtgggttt |
15559158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 61 - 151
Target Start/End: Complemental strand, 33131449 - 33131359
Alignment:
| Q |
61 |
tggtggaggatattaaggtgttagcatggaggtgggttttgagtcgtttgaagttgccggtttgtttgtattatgaatggacgtggaatcc |
151 |
Q |
| |
|
||||||||| |||||||||||||| ||| ||||||| |||||||| ||||| |||||||||||||| | | | |||||||| |||||||| |
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| T |
33131449 |
tggtggaggcaattaaggtgttagcttggcggtgggtattgagtcgcttgaatttgccggtttgtttatttaaagaatggacatggaatcc |
33131359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 260; Significance: 1e-144; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 17 - 284
Target Start/End: Original strand, 24837067 - 24837334
Alignment:
| Q |
17 |
aaatgactttatttttaaaaattctccttttggtattgacgacatggtggaggatattaaggtgttagcatggaggtgggttttgagtcgtttgaagttg |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
24837067 |
aaatgactttatttttaaaaattctccttttggtattgacgacatggtggaggatattaaggtgttagcttggaggtgggttttgagtcgtttgaagttg |
24837166 |
T |
|
| Q |
117 |
ccggtttgtttgtattatgaatggacgtggaatccacaagcgtgtttggtgcggtaatggtggatttttgggccttttagatgggcgttgaggctttggt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
24837167 |
ccggtttgtttgtattatgaatggacgtggaatccacaagcgtgtttggtgcggtaatggtggatttttgggccttttaggtgggcgttgaggctttggt |
24837266 |
T |
|
| Q |
217 |
atgctgctgctctgctgttttggctaggagtatatgacagcctcattgctgtcctgcttctttgcacc |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24837267 |
atgctgctgctctgctgttttggctaggagtatatgacagcctcattgctgtcctgcttctttgcacc |
24837334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 198 - 266
Target Start/End: Original strand, 30871450 - 30871518
Alignment:
| Q |
198 |
tgggcgttgaggctttggtatgctgctgctctgctgttttggctaggagtatatgacagcctcattgct |
266 |
Q |
| |
|
|||||| ||||||| | ||||||||||| | |||||||||| | ||| |||||||||||||| ||||| |
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|
| T |
30871450 |
tgggcggtgaggctgttgtatgctgctgttttgctgttttgacagggaatatatgacagcctcgttgct |
30871518 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 136; Significance: 1e-70; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 17 - 284
Target Start/End: Original strand, 34326292 - 34326558
Alignment:
| Q |
17 |
aaatgactttatttttaaaaattctccttttggtattgacgacatggtggaggatattaaggtgttagcatggaggtgggttttgagtcgtttgaagttg |
116 |
Q |
| |
|
||||||||| ||||| || |||||||||||| | ||||| || ||||||||||| |||||||||||||||||||||||||||||||| || ||||| ||| |
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| T |
34326292 |
aaatgacttcattttcaacaattctccttttcgcattgatgagatggtggaggacattaaggtgttagcatggaggtgggttttgagccgcttgaa-ttg |
34326390 |
T |
|
| Q |
117 |
ccggtttgtttgtattatgaatggacgtggaatccacaagcgtgtttggtgcggtaatggtggatttttgggccttttagatgggcgttgaggctttggt |
216 |
Q |
| |
|
|||||||||||||| || ||||||| ||||||||||||| |||| ||||||||||||||||| |||| ||| || ||| |||| | || ||||||||| |
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|
| T |
34326391 |
ccggtttgtttgtactacaaatggacttggaatccacaagagtgtctggtgcggtaatggtggtttttggggtctgttacgtgggtgctgcggctttggt |
34326490 |
T |
|
| Q |
217 |
atgctgctgctctgctgttttggctaggagtatatgacagcctcattgctgtcctgcttctttgcacc |
284 |
Q |
| |
|
||||||||| |||| | ||| ||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
34326491 |
atgctgctgttctgatttttcggctaggagtatatgacagcctcgctgctgtcctgcttctttgcacc |
34326558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 75 - 284
Target Start/End: Original strand, 4028425 - 4028634
Alignment:
| Q |
75 |
aaggtgttagcatggaggtgggttttgagtcgtttgaagttgccggtttgtttgtattatgaatggacgtggaatccacaagcgtgtttggtgcggtaat |
174 |
Q |
| |
|
||||||||||||||||| ||||||||||| || ||||| ||||||||||||||||| || |||||||| |||||||| |||| |||| |||||||||||| |
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|
| T |
4028425 |
aaggtgttagcatggagatgggttttgagccgcttgaatttgccggtttgtttgtactacgaatggacttggaatccgcaagagtgtctggtgcggtaat |
4028524 |
T |
|
| Q |
175 |
ggtggatttttgggccttttagatgggcgttgaggctttggtatgctgctgctctgctgttttggctaggagtatatgacagcctcattgctgtcctgct |
274 |
Q |
| |
|
||||| |||| ||| || ||| ||| | || |||||||||||||||||| |||||| ||||||||||||||||||||| |||||| |||||||||||| |
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|
| T |
4028525 |
ggtggtttttggggtctgttatgcgggtgctgcggctttggtatgctgctgttctgcttttttggctaggagtatatgacggcctcactgctgtcctgct |
4028624 |
T |
|
| Q |
275 |
tctttgcacc |
284 |
Q |
| |
|
|||||||||| |
|
|
| T |
4028625 |
tctttgcacc |
4028634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 410 - 515
Target Start/End: Complemental strand, 22792978 - 22792885
Alignment:
| Q |
410 |
aacttgaattattaaaccataaacagacgatactccctatgctacataacatacatgctgccaatgggatagacatttgtgagaacatctttacacatga |
509 |
Q |
| |
|
|||||||||||| ||| ||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||| |
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|
| T |
22792978 |
aacttgaattat-aaattataaacagatgatactccctatgctacata-----catgctgc------gatagacatttgtgagaacatctttagacatga |
22792891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 425
Target Start/End: Complemental strand, 22793064 - 22793016
Alignment:
| Q |
375 |
tgctaaataacaaagatgcttcctatattagtgataacttgaattattaaa |
425 |
Q |
| |
|
|||||||||||||||||||||||||| || ||| |||||||||||||||| |
|
|
| T |
22793064 |
tgctaaataacaaagatgcttcctatgtt--tgaaaacttgaattattaaa |
22793016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 229 - 274
Target Start/End: Complemental strand, 35052375 - 35052330
Alignment:
| Q |
229 |
tgctgttttggctaggagtatatgacagcctcattgctgtcctgct |
274 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
35052375 |
tgctgttttggctacgagtatatgacagcctcattgttgtcctgct |
35052330 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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