View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6962_low_9 (Length: 513)
Name: NF6962_low_9
Description: NF6962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6962_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 1 - 494
Target Start/End: Complemental strand, 51874930 - 51874437
Alignment:
| Q |
1 |
atcaatactaggaaaaacccatgaatctttataaacacgtgagaaaaatacaaaagatgaaaggaaaatcaaaaggttgagattgaaccaaatcattgct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51874930 |
atcaatactaggaaaaacccatgaatctttataaacacgtgagaaaaatacaaaagatgaaaggaaaatcaaaaggttgagattgaaccaaatcattgct |
51874831 |
T |
|
| Q |
101 |
attgccacccctgcaacacccattttgaaatggatcacaagaagaaaattcaaaggaacatgaagagtaacagatatggcggaacaatacgttaatggca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
51874830 |
attgccacccctgcaacacccattttgaaatggatcacaagaagaaaattcaaaggaacatgaagagtaacagatatggctgaacaatacgttaatggca |
51874731 |
T |
|
| Q |
201 |
atgttatattttgtgttcttaggtaaatacgaagaggatgaagaaacgagagaaagaaaagatctggtagtgaaaagagaatgaaagtttgtgctgttga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51874730 |
atgttatattttgtgttcttaggtaaatacgaagaggatgaagaaacgagagaaagaaaagatctggtagtgaaaagagaatgaaagtttgtgctgttga |
51874631 |
T |
|
| Q |
301 |
tgaaatttcttcatcttgaccacaagacatgagaatctttttcatgttaagccataaatatgcaatgggaatggaagtggaaagaagtaaaagaacggct |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
51874630 |
tgaaatttcttcatcttgaccacaagacatgagaatctttttcatgttaagccataaatatgcaatgggaatggaagtggaaagaagtaaaagaacggtt |
51874531 |
T |
|
| Q |
401 |
ctttgaagagttaagccaagtatcttccattgtttagctccataagcttgtccacaaatgggttccattcccatggctaaaccagataggacag |
494 |
Q |
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| T |
51874530 |
ctttgaagagttaagccaagtatcttccattgtttagctccataagcttgtccacaaatgggttccattcccatggctaaaccagataggacag |
51874437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 1e-36; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 374 - 488
Target Start/End: Original strand, 28506275 - 28506389
Alignment:
| Q |
374 |
gaagtggaaagaagtaaaagaacggctctttgaagagttaagccaagtatcttccattgtttagctccataagcttgtccacaaatgggttccattccca |
473 |
Q |
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||||| |||||||| | |||||| | ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
28506275 |
gaagttgaaagaagaagaagaactgttctttgaagtgttaagccaagtatcttccattgttttgctccataagcttgtccacaaattggttccattccca |
28506374 |
T |
|
| Q |
474 |
tggctaaaccagata |
488 |
Q |
| |
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|||||||||| |||| |
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| T |
28506375 |
tggctaaacctgata |
28506389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 486
Target Start/End: Complemental strand, 2989905 - 2989852
Alignment:
| Q |
433 |
tttagctccataagcttgtccacaaatgggttccattcccatggctaaaccaga |
486 |
Q |
| |
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|||||| ||| ||||||| |||||||| ||||||||||||||||| | |||||| |
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| T |
2989905 |
tttagcaccaaaagcttgaccacaaataggttccattcccatggcaagaccaga |
2989852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 28505920 - 28506033
Alignment:
| Q |
19 |
ccatgaatctttataaacacgtgagaaaaatacaaaagatgaaaggaaaatcaaaaggttgagattgaaccaaatcattgctattgccacccctgcaaca |
118 |
Q |
| |
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|||||| | ||||||||||| ||||| ||| |||||||||||| ||||| | |||||| | ||| | ||| ||||||||||| ||||||||||| |
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| T |
28505920 |
ccatgactttttataaacactagagaagtataaaaaagatgaaagtaaaataacaaggtttaaatttgtcaaaaccattgctattgacacccctgcaatc |
28506019 |
T |
|
| Q |
119 |
cccattttgaaatg |
132 |
Q |
| |
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||||||| |||||| |
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| T |
28506020 |
cccatttggaaatg |
28506033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 412 - 474
Target Start/End: Complemental strand, 10676415 - 10676353
Alignment:
| Q |
412 |
taagccaagtatcttccattgtttagctccataagcttgtccacaaatgggttccattcccat |
474 |
Q |
| |
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||||| ||| ||||||||||| || ||||||| ||||| ||||||||| ||||||||||||| |
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| T |
10676415 |
taagcaaagcatcttccattgctttgctccattagcttctccacaaataagttccattcccat |
10676353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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