View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6963_low_1 (Length: 562)
Name: NF6963_low_1
Description: NF6963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6963_low_1 |
 | |
|
| [»] scaffold0038 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0038 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 17 - 500
Target Start/End: Original strand, 42273 - 42768
Alignment:
| Q |
17 |
tgagtgacccacatggaggaaaatcaatttagtaggaccaaccaagtctccattatcatttcttttcatgtgattcaaaagagcttaatattatctctcc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
42273 |
tgagtgacccacatggaggaaaatcaatttagtaggaccaaccaagtctccattatcatttcttttcatgtgattcaaaagagtttaatattctctctcg |
42372 |
T |
|
| Q |
117 |
cnnnnnnnctcaagttttcattctattattagtaggaccagtgtgctttttatttgggtctgcaattttaccaagtaagaaacttaatgaatgccttaaa |
216 |
Q |
| |
|
| |||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
42373 |
ctttttttctcaagttttcattctattattagtagggccagtgtgctttt-atttgaatctgcaattttaccaagtaagaaacttcatgaatgccttaaa |
42471 |
T |
|
| Q |
217 |
aatcaaactgatattttcaggtgggaggaccctaaaaatgaattgaaagcttaagtaatattttgtttagacctcaaaagtctttacgatatttaatctc |
316 |
Q |
| |
|
| ||||| ||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42472 |
agtcaaattgacattttcagatggga---ccctaaaaatgaattgaaagcttaagtaatattttgtttagacctcaaaagtctttacgatatttaatctc |
42568 |
T |
|
| Q |
317 |
atctactaaactgacatttctagttgttattctaagtcaaaacttgatatctatctttagtgtatggttgtgaa----------------tcaggaaaag |
400 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||| ||||| |
|
|
| T |
42569 |
atctaccaaactgacatttctagttgttattctatgtcaaaacttgatatctatatttagtgtatggttgtgaattgcctatcagacaggtcagcaaaag |
42668 |
T |
|
| Q |
401 |
agaaataaatttgacagctgcaaaagtgaaaccacgttgctatttaattggttcaatcttgttttattatattattacaatcacattcacacactcatag |
500 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42669 |
agaaataaattagacagctgcaaaagtgaaaccacgttgctatttaattttttcaatcttgttttattatattattacaatcacattcacacactcatag |
42768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 332; Significance: 0; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 17 - 500
Target Start/End: Original strand, 28242111 - 28242606
Alignment:
| Q |
17 |
tgagtgacccacatggaggaaaatcaatttagtaggaccaaccaagtctccattatcatttcttttcatgtgattcaaaagagcttaatattatctctcc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
28242111 |
tgagtgacccacatggaggaaaatcaatttagtaggaccaaccaagtctccattatcatttcttttcatgtgattcaaaagagtttaatattctctctcg |
28242210 |
T |
|
| Q |
117 |
cnnnnnnnctcaagttttcattctattattagtaggaccagtgtgctttttatttgggtctgcaattttaccaagtaagaaacttaatgaatgccttaaa |
216 |
Q |
| |
|
| |||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
28242211 |
ctttttttctcaagttttcattctattattagtagggccagtgtgctttt-atttgaatctgcaattttaccaagtaagaaacttcatgaatgccttaaa |
28242309 |
T |
|
| Q |
217 |
aatcaaactgatattttcaggtgggaggaccctaaaaatgaattgaaagcttaagtaatattttgtttagacctcaaaagtctttacgatatttaatctc |
316 |
Q |
| |
|
| ||||| ||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28242310 |
agtcaaattgacattttcagatggga---ccctaaaaatgaattgaaagcttaagtaatattttgtttagacctcaaaagtctttacgatatttaatctc |
28242406 |
T |
|
| Q |
317 |
atctactaaactgacatttctagttgttattctaagtcaaaacttgatatctatctttagtgtatggttgtgaa----------------tcaggaaaag |
400 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||| ||||| |
|
|
| T |
28242407 |
atctaccaaactgacatttctagttgttattctatgtcaaaacttgatatctatatttagtgtatggttgtgaattgcctatcagacaggtcagcaaaag |
28242506 |
T |
|
| Q |
401 |
agaaataaatttgacagctgcaaaagtgaaaccacgttgctatttaattggttcaatcttgttttattatattattacaatcacattcacacactcatag |
500 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28242507 |
agaaataaattagacagctgcaaaagtgaaaccacgttgctatttaattttttcaatcttgttttattatattattacaatcacattcacacactcatag |
28242606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 258 - 358
Target Start/End: Original strand, 27671388 - 27671488
Alignment:
| Q |
258 |
attgaaagcttaagtaatattttgtttagacctcaaaagtctttacgatatttaatctcatctactaaactgacatttctagttgttattctaagtcaaa |
357 |
Q |
| |
|
||||| ||||||||| ||||||||||| || ||||||||||||| ||||||||||| ||||||| ||||| |||||||||| ||||||| ||||||||| |
|
|
| T |
27671388 |
attgagagcttaagtgatattttgtttggatctcaaaagtctttctgatatttaatcacatctaccaaactcacatttctagctgttattttaagtcaaa |
27671487 |
T |
|
| Q |
358 |
a |
358 |
Q |
| |
|
| |
|
|
| T |
27671488 |
a |
27671488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 204 - 294
Target Start/End: Complemental strand, 25105516 - 25105429
Alignment:
| Q |
204 |
tgaatgccttaaaaatcaaactgatattttcaggtgggaggaccctaaaaatgaattgaaagcttaagtaatattttgtttagacctcaaa |
294 |
Q |
| |
|
|||||| ||||||||||||||||| ||| || |||||| ||||||||||||||||| ||||||||| ||||||||||| ||||||||| |
|
|
| T |
25105516 |
tgaatgacttaaaaatcaaactgacattcccaagtggga---ccctaaaaatgaattgagagcttaagtgatattttgtttggacctcaaa |
25105429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 204 - 284
Target Start/End: Original strand, 27611652 - 27611729
Alignment:
| Q |
204 |
tgaatgccttaaaaatcaaactgatattttcaggtgggaggaccctaaaaatgaattgaaagcttaagtaatattttgttt |
284 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||| |||||||||||||||||| ||||||||| ||| ||||||| |
|
|
| T |
27611652 |
tgaatgccttaaaaatcaaacttacattttcaggtg---ggaccctaaaaatgaattatgagcttaagtgatactttgttt |
27611729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 258 - 360
Target Start/End: Original strand, 27672348 - 27672450
Alignment:
| Q |
258 |
attgaaagcttaagtaatattttgtttagacctcaaaagtctttacgatatttaatctcatctactaaactgacatttctagttgttattctaagtcaaa |
357 |
Q |
| |
|
||||| || |||||| ||||||||| | |||||||||||||||| |||||||||| ||||||||||| | ||||||| ||| |||||| | |||| || |
|
|
| T |
27672348 |
attgagagtttaagtgatattttgtatggacctcaaaagtctttttaatatttaatcccatctactaaaatcacatttccagtcgttatttttagtccaa |
27672447 |
T |
|
| Q |
358 |
act |
360 |
Q |
| |
|
||| |
|
|
| T |
27672448 |
act |
27672450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 206 - 298
Target Start/End: Original strand, 27605666 - 27605752
Alignment:
| Q |
206 |
aatgccttaaaaatcaaactgatattttcaggtgggaggaccctaaaaatgaattgaaagcttaagtaatattttgtttagacctcaaaagtc |
298 |
Q |
| |
|
|||||||||||| ||||||||| ||||||| |||||| | ||||||||||||||| |||| || ||||||||||||||||| ||||||| |
|
|
| T |
27605666 |
aatgccttaaaagtcaaactgaaattttcaagtgggatg---ctaaaaatgaattgagagct---gtgatattttgtttagaccttaaaagtc |
27605752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 129 - 185
Target Start/End: Complemental strand, 25105621 - 25105566
Alignment:
| Q |
129 |
agttttcattctattattagtaggaccagtgtgctttttatttgggtctgcaatttt |
185 |
Q |
| |
|
||||||||||||||||||||||||| || ||||| |||||||||| ||||| ||||| |
|
|
| T |
25105621 |
agttttcattctattattagtaggatcaatgtgc-ttttatttggctctgcgatttt |
25105566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 206 - 298
Target Start/End: Complemental strand, 26654578 - 26654492
Alignment:
| Q |
206 |
aatgccttaaaaatcaaactgatattttcaggtgggaggaccctaaaaatgaattgaaagcttaagtaatattttgtttagacctcaaaagtc |
298 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||| |||| || ||||||||||| |||| || ||||||||||||||| ||||||||| |
|
|
| T |
26654578 |
aatgccttaaaaatcaaactgacattttcaagtg---agaccttagaaatgaattgacagct---gtgatattttgtttagacttcaaaagtc |
26654492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 206 - 298
Target Start/End: Complemental strand, 26760548 - 26760462
Alignment:
| Q |
206 |
aatgccttaaaaatcaaactgatattttcaggtgggaggaccctaaaaatgaattgaaagcttaagtaatattttgtttagacctcaaaagtc |
298 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||| |||| || ||||||||||| |||| || ||||||||||||||| ||||||||| |
|
|
| T |
26760548 |
aatgccttaaaaatcaaactgacattttcaagtg---agaccttagaaatgaattgacagct---gtgatattttgtttagacttcaaaagtc |
26760462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University