View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6963_low_2 (Length: 317)
Name: NF6963_low_2
Description: NF6963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6963_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 24049433 - 24049734
Alignment:
| Q |
1 |
gtaatatggtaggctgatatgctgatgttgatctcaaagcaataaacatacacagttctaaggccattttaacttaaattaatttaatcatattcnnnnn |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||| |
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| T |
24049433 |
gtaatatggtaggctgatatgctgatgttgatctcaaagcaataaacatacaca-ttctaagaccattctaacttaaattaatttaatcatattcttttt |
24049531 |
T |
|
| Q |
101 |
nnnnnnaggccattcttgttgtctttactagtaaactttgatgccttggaccaaatatcaaacaagattagaataagagtagatcataaaagatcatatg |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24049532 |
tttt--aggccattcttgttgtctttacttaaaaactttgatgccttggaccaaatatcaaacaagattagaataagagtagatcataaaagatcatatg |
24049629 |
T |
|
| Q |
201 |
catttctctttggtagtttgtatagactgactcattcaaccgttctcatttacttctgatatgcaaaccacagataccgcctaaatgttcattggttagg |
300 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24049630 |
catttctatttggtagtttgtatagactgactcattcaaccgttctcatttacttctgatatgcaaaccacagataccgcctaaatgttcattggttagg |
24049729 |
T |
|
| Q |
301 |
agtat |
305 |
Q |
| |
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||||| |
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| T |
24049730 |
agtat |
24049734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 24052569 - 24052873
Alignment:
| Q |
1 |
gtaatatggtaggctgatatgctgatgttgatctcaaagcaataaacatacacagttctaaggccattttaacttaaattaatttaatcatattcnnnnn |
100 |
Q |
| |
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|||||||||| |||||||||||||||||||||| |||||||| ||||||||||| ||||||| ||||| |||||||||||||||||||||||||| |
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| T |
24052569 |
gtaatatggttggctgatatgctgatgttgatcacaaagcaagaaacatacaca-ttctaagaccattctaacttaaattaatttaatcatattcttttt |
24052667 |
T |
|
| Q |
101 |
nnnnnnaggccattcttgttgtctttactagtaaactttgatgccttggaccaaatatcaaacaagattagaataagagtagatcataaaagatcatatg |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24052668 |
tttt--aggccattcttgttgtctttacttaaaaactttgatgccttggaccaaatgtcaaacaagattagaataagagtagatcataaaagatcatatg |
24052765 |
T |
|
| Q |
201 |
catttctctttggtagtttgtatagactgactcattcaaccgttctcatttacttctgatat-------gcaaaccacagataccgcctaaatgttcatt |
293 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
24052766 |
catttctatttggtagtttgtatagactgactcattcaaccgttctcatttacttctgatatgcaaacggcaaaccacagataccgcctaaatgttcatt |
24052865 |
T |
|
| Q |
294 |
ggttagga |
301 |
Q |
| |
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|||||||| |
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| T |
24052866 |
ggttagga |
24052873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 24102163 - 24102203
Alignment:
| Q |
26 |
tgttgatctcaaagcaataaacatacacagttctaaggcca |
66 |
Q |
| |
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|||||| |||||||||| ||||||||| ||||||||||||| |
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| T |
24102163 |
tgttgaactcaaagcaagaaacatacaaagttctaaggcca |
24102203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 9e-33; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 137 - 264
Target Start/End: Complemental strand, 4261422 - 4261295
Alignment:
| Q |
137 |
tttgatgccttggaccaaatatcaaacaagattagaataagagtagatcataaaagatcatatgcatttctctttggtagtttgtatagactgactcatt |
236 |
Q |
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|||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||| ||| | |||||| ||||| ||| ||||||||| |
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| T |
4261422 |
tttgatgccttggaccaaatgacaaagaagaatagaataagagtagatcataaaagatcatatgcttttttatttggtcatttgtgcagattgactcatt |
4261323 |
T |
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| Q |
237 |
caaccgttctcatttacttctgatatgc |
264 |
Q |
| |
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|||| ||||||||||||| ||||||||| |
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| T |
4261322 |
caactgttctcatttactgctgatatgc |
4261295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 204
Target Start/End: Original strand, 4037883 - 4037943
Alignment:
| Q |
144 |
ccttggaccaaatatcaaacaagattagaataagagtagatcataaaagatcatatgcatt |
204 |
Q |
| |
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|||| ||| ||||| ||| ||| | ||||||| |||||||||||||||||||||||||||| |
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| T |
4037883 |
cctttgacaaaataacaagcaataatagaatatgagtagatcataaaagatcatatgcatt |
4037943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 191
Target Start/End: Original strand, 4027546 - 4027602
Alignment:
| Q |
135 |
actttgatgccttggaccaaatatcaaacaagattagaataagagtagatcataaaa |
191 |
Q |
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||||||||||||||||| |||| || |||| | |||||||||||||| |||||||| |
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| T |
4027546 |
actttgatgccttggacaaaatgacagacaaaaatagaataagagtagttcataaaa |
4027602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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