View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6963_low_3 (Length: 300)

Name: NF6963_low_3
Description: NF6963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6963_low_3
NF6963_low_3
[»] chr6 (2 HSPs)
chr6 (1-289)||(12254190-12254477)
chr6 (230-278)||(6021896-6021944)
[»] chr3 (3 HSPs)
chr3 (220-278)||(25038763-25038821)
chr3 (216-273)||(39266587-39266644)
chr3 (6-42)||(3904403-3904439)
[»] chr8 (1 HSPs)
chr8 (208-279)||(33631621-33631692)
[»] chr2 (3 HSPs)
chr2 (214-281)||(13962838-13962904)
chr2 (230-281)||(34967242-34967293)
chr2 (231-281)||(15175641-15175691)
[»] chr7 (2 HSPs)
chr7 (215-281)||(23345326-23345392)
chr7 (7-57)||(14653747-14653797)
[»] chr5 (4 HSPs)
chr5 (7-98)||(16135621-16135712)
chr5 (16-85)||(16137226-16137295)
chr5 (7-59)||(17689937-17689989)
chr5 (10-40)||(31992126-31992156)
[»] chr4 (2 HSPs)
chr4 (230-281)||(2257204-2257255)
chr4 (230-281)||(21555985-21556036)
[»] chr1 (2 HSPs)
chr1 (7-98)||(31649857-31649948)
chr1 (230-281)||(28337963-28338014)


Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 12254477 - 12254190
Alignment:
Q  1 tcagataaaactcacaccaatactttgacgtgtggagcaaaactaacaacaactaaaaccaaagggatcctacaagaacagacaatgaaagaagataatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  12254477 tcagataaaactcacaccaatactttgacgtgtggagcaaaactaacaacaaccaaaaccaaagggatcctacaagaacagacaatgaaacaagataatt 12254378  T
Q  101 gagaaaaagaagaacacgacgatatttttcacaaagataattgagaaaaataagaacaaacaagaacaagaggattcatcatatggagaatcttaatcat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  12254377 gagaaaaagaagaacacgacgatatttttcacaaagataattgagaaaaataagaacaaacaagaacacgaggattcatcatatggagaatcttaatcat 12254278  T
Q  201 gtatttgtttttcttacatattcaattgcttatgtttagttagcatgagtagctagtttcctaggttaggtcatgtagatgtccatctc 289  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  12254277 gtattt-tttttcttacatattcaattgcttatgtttagttagcatgagtagctagtttcctaggttaggtcatgtagatgtccttctc 12254190  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 278
Target Start/End: Complemental strand, 6021944 - 6021896
Alignment:
Q  230 ttatgtttagttagcatgagtagctagtttcctaggttaggtcatgtag 278  Q
    ||||||||||||| |||||| | | |||||| |||||||||||||||||    
T  6021944 ttatgtttagttatcatgagcatcaagtttcttaggttaggtcatgtag 6021896  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 220 - 278
Target Start/End: Original strand, 25038763 - 25038821
Alignment:
Q  220 attcaattgcttatgtttagttagcatgagtagctagtttcctaggttaggtcatgtag 278  Q
    ||||| ||| ||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  25038763 attcatttgtttatgtttagttagcatgagtggctaatttcctaggttaggtcatgtag 25038821  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 273
Target Start/End: Original strand, 39266587 - 39266644
Alignment:
Q  216 acatattcaattgcttatgtttagttagcatgagtagctagtttcctaggttaggtca 273  Q
    ||||||||||||| ||||||||||||| |||||||||||||||| |||| || |||||    
T  39266587 acatattcaattgtttatgtttagttatcatgagtagctagttttctagatttggtca 39266644  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 3904439 - 3904403
Alignment:
Q  6 taaaactcacaccaatactttgacgtgtggagcaaaa 42  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  3904439 taaaactcacaccaatactttgatgtgtagagcaaaa 3904403  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 279
Target Start/End: Complemental strand, 33631692 - 33631621
Alignment:
Q  208 tttttcttacatattcaattgcttatgtttagttagcatgagtagctagtttcctaggttaggtcatgtaga 279  Q
    ||||| ||||||||| | ||| |||| ||||| ||||||| ||||||| |||||||||||||||||||||||    
T  33631692 ttttttttacatatttagttgtttatatttagatagcatgtgtagctaatttcctaggttaggtcatgtaga 33631621  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 281
Target Start/End: Original strand, 13962838 - 13962904
Alignment:
Q  214 ttacatattcaattgcttatgtttagttagcatgagtagctagtttcctaggttaggtcatgtagatg 281  Q
    ||||||||||  ||| |||||||||| |||||||| |||||| |||||||||||||||||||||||||    
T  13962838 ttacatattcttttgtttatgtttagatagcatga-tagctaatttcctaggttaggtcatgtagatg 13962904  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 281
Target Start/End: Original strand, 34967242 - 34967293
Alignment:
Q  230 ttatgtttagttagcatgagtagctagtttcctaggttaggtcatgtagatg 281  Q
    ||||||||||||| ||||||||| |||||||||||||| | |||||||||||    
T  34967242 ttatgtttagttatcatgagtagttagtttcctaggttcgatcatgtagatg 34967293  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 281
Target Start/End: Original strand, 15175641 - 15175691
Alignment:
Q  231 tatgtttagttagcatgagtagctagtttcctaggttaggtcatgtagatg 281  Q
    |||||||||||| ||||||| |||||||| |||||||| || |||||||||    
T  15175641 tatgtttagttatcatgagttgctagttttctaggttatgttatgtagatg 15175691  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 215 - 281
Target Start/End: Complemental strand, 23345392 - 23345326
Alignment:
Q  215 tacatattcaattgcttatgtttagttagcatgagtagctagtttcctaggttaggtcatgtagatg 281  Q
    |||||||||| ||| |||||||||||||||| ||  ||||| |||||||| ||||||||||||||||    
T  23345392 tacatattcatttgtttatgtttagttagcacgataagctattttcctagattaggtcatgtagatg 23345326  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 14653747 - 14653797
Alignment:
Q  7 aaaactcacaccaatactttgacgtgtggagcaaaactaacaacaactaaa 57  Q
    ||||||||||||||||||||||  |||||||||||| || |||||||||||    
T  14653747 aaaactcacaccaatactttgatatgtggagcaaaattagcaacaactaaa 14653797  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 98
Target Start/End: Complemental strand, 16135712 - 16135621
Alignment:
Q  7 aaaactcacaccaatactttgacgtgtggagcaaaactaacaacaactaaaaccaaagggatcctacaagaacagacaatgaaagaagataa 98  Q
    ||||||||| |||||||||||| |||||||| |||| ||| |||||| ||||||||||  ||||  ||| |||| ||||| ||| |||||||    
T  16135712 aaaactcaccccaatactttgatgtgtggagtaaaattaaaaacaaccaaaaccaaagtaatccagcaaaaacatacaataaaacaagataa 16135621  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 16137295 - 16137226
Alignment:
Q  16 accaatactttgacgtgtggagcaaaactaacaacaactaaaaccaaagggatcctacaagaacagacaa 85  Q
    ||||||||||||| |||||| | |||| || || |||| |||||||||| ||||| ||||||||||||||    
T  16137295 accaatactttgatgtgtggggtaaaattagcagcaaccaaaaccaaagtgatccaacaagaacagacaa 16137226  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 17689989 - 17689937
Alignment:
Q  7 aaaactcacaccaatactttgacgtgtggagcaaaactaacaacaactaaaac 59  Q
    ||||||||||||||||||||||   ||||||||||| || |||||||||||||    
T  17689989 aaaactcacaccaatactttgatacgtggagcaaaattagcaacaactaaaac 17689937  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 40
Target Start/End: Original strand, 31992126 - 31992156
Alignment:
Q  10 actcacaccaatactttgacgtgtggagcaa 40  Q
    |||||||||||||||||||||||||||||||    
T  31992126 actcacaccaatactttgacgtgtggagcaa 31992156  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 281
Target Start/End: Complemental strand, 2257255 - 2257204
Alignment:
Q  230 ttatgtttagttagcatgagtagctagtttcctaggttaggtcatgtagatg 281  Q
    ||||||||||||| |||||| | |||||||| ||||||||||||||||||||    
T  2257255 ttatgtttagttatcatgagcaactagtttcttaggttaggtcatgtagatg 2257204  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 281
Target Start/End: Complemental strand, 21556036 - 21555985
Alignment:
Q  230 ttatgtttagttagcatgagtagctagtttcctaggttaggtcatgtagatg 281  Q
    ||||||||||||| ||||||| | ||||||||| |||||| |||||||||||    
T  21556036 ttatgtttagttatcatgagttgatagtttcctcggttagatcatgtagatg 21555985  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 98
Target Start/End: Complemental strand, 31649948 - 31649857
Alignment:
Q  7 aaaactcacaccaatactttgacgtgtggagcaaaactaacaacaactaaaaccaaagggatcctacaagaacagacaatgaaagaagataa 98  Q
    |||||||||||||||| ||||| ||||||||||||| || || |||| |||||||||| |||   ||||| ||| ||||| ||| |||||||    
T  31649948 aaaactcacaccaatattttgatgtgtggagcaaaaatagcagcaaccaaaaccaaagcgattaaacaagcacaaacaatcaaacaagataa 31649857  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 281
Target Start/End: Original strand, 28337963 - 28338014
Alignment:
Q  230 ttatgtttagttagcatgagtagctagtttcctaggttaggtcatgtagatg 281  Q
    ||||||||||  | ||||||||| |||||||||||||||||| |||||||||    
T  28337963 ttatgtttagggatcatgagtagttagtttcctaggttaggtgatgtagatg 28338014  T

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