View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6963_low_4 (Length: 291)

Name: NF6963_low_4
Description: NF6963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6963_low_4
NF6963_low_4
[»] chr1 (23 HSPs)
chr1 (62-233)||(49482834-49483006)
chr1 (13-63)||(15881639-15881689)
chr1 (27-67)||(19051732-19051772)
chr1 (13-65)||(29390229-29390281)
chr1 (13-64)||(33474991-33475042)
chr1 (26-63)||(35979747-35979784)
chr1 (14-63)||(40093740-40093789)
chr1 (27-63)||(8164974-8165010)
chr1 (26-57)||(8269264-8269295)
chr1 (17-64)||(51251902-51251949)
chr1 (13-63)||(5154880-5154930)
chr1 (13-63)||(8211766-8211816)
chr1 (13-63)||(12974168-12974218)
chr1 (13-63)||(18311880-18311930)
chr1 (13-63)||(20494221-20494271)
chr1 (13-63)||(29707625-29707675)
chr1 (13-63)||(33910249-33910299)
chr1 (26-63)||(4967769-4967806)
chr1 (13-62)||(17652326-17652375)
chr1 (18-59)||(17989643-17989684)
chr1 (26-59)||(24630552-24630585)
chr1 (27-63)||(26344498-26344534)
chr1 (27-59)||(36202901-36202933)
[»] chr5 (21 HSPs)
chr5 (13-64)||(9161541-9161592)
chr5 (13-63)||(33901440-33901490)
chr5 (13-64)||(10174614-10174665)
chr5 (13-64)||(32520697-32520748)
chr5 (13-63)||(666805-666855)
chr5 (13-63)||(8409472-8409522)
chr5 (13-63)||(9988409-9988459)
chr5 (27-64)||(2423416-2423453)
chr5 (13-61)||(42119414-42119462)
chr5 (13-64)||(30002484-30002535)
chr5 (25-60)||(38147722-38147757)
chr5 (13-63)||(701703-701753)
chr5 (26-64)||(6595538-6595576)
chr5 (13-63)||(12680548-12680598)
chr5 (13-63)||(38334288-38334338)
chr5 (27-60)||(6633917-6633950)
chr5 (26-63)||(11917954-11917991)
chr5 (15-64)||(14653045-14653094)
chr5 (26-63)||(27885635-27885672)
chr5 (26-63)||(36176362-36176399)
chr5 (14-62)||(7590950-7590998)
[»] chr7 (21 HSPs)
chr7 (13-63)||(1335960-1336010)
chr7 (13-63)||(31876119-31876169)
chr7 (13-64)||(42910153-42910204)
chr7 (26-64)||(524301-524339)
chr7 (13-59)||(31011203-31011249)
chr7 (13-63)||(36921029-36921079)
chr7 (13-63)||(43429728-43429778)
chr7 (26-59)||(40849470-40849503)
chr7 (14-63)||(45898028-45898077)
chr7 (13-63)||(3211679-3211729)
chr7 (13-63)||(8768203-8768253)
chr7 (13-63)||(11205915-11205965)
chr7 (26-64)||(12118109-12118147)
chr7 (13-63)||(36509192-36509242)
chr7 (13-63)||(47204004-47204054)
chr7 (14-59)||(23033267-23033312)
chr7 (26-59)||(30079034-30079067)
chr7 (27-64)||(31287210-31287247)
chr7 (13-65)||(22367000-22367052)
chr7 (28-60)||(29211066-29211098)
chr7 (27-63)||(48643388-48643424)
[»] chr4 (28 HSPs)
chr4 (13-63)||(8176085-8176135)
chr4 (26-64)||(35014884-35014922)
chr4 (15-63)||(15985993-15986041)
chr4 (13-68)||(5121820-5121875)
chr4 (13-64)||(5261327-5261378)
chr4 (13-64)||(48996639-48996690)
chr4 (14-64)||(6333873-6333923)
chr4 (13-63)||(10777819-10777869)
chr4 (18-64)||(21069651-21069697)
chr4 (13-63)||(30193453-30193503)
chr4 (13-63)||(31301949-31301999)
chr4 (26-63)||(32222774-32222811)
chr4 (19-63)||(18536093-18536137)
chr4 (13-65)||(29640131-29640183)
chr4 (15-59)||(41325996-41326040)
chr4 (18-65)||(23119738-23119785)
chr4 (13-64)||(32137255-32137306)
chr4 (13-64)||(52345370-52345421)
chr4 (20-67)||(54997232-54997279)
chr4 (13-58)||(3666512-3666558)
chr4 (13-63)||(10219233-10219283)
chr4 (13-59)||(20986998-20987044)
chr4 (13-63)||(42558219-42558269)
chr4 (26-64)||(48292878-48292916)
chr4 (13-63)||(50570495-50570545)
chr4 (13-63)||(51395379-51395429)
chr4 (18-63)||(43631086-43631131)
chr4 (26-63)||(48601954-48601991)
[»] chr3 (19 HSPs)
chr3 (20-64)||(38651474-38651518)
chr3 (27-63)||(44651556-44651592)
chr3 (13-64)||(35401706-35401757)
chr3 (13-64)||(50562073-50562124)
chr3 (26-60)||(4555221-4555255)
chr3 (26-63)||(55467071-55467108)
chr3 (28-63)||(8557212-8557247)
chr3 (13-64)||(21586324-21586375)
chr3 (13-64)||(25918679-25918730)
chr3 (13-63)||(4669130-4669180)
chr3 (13-63)||(6003866-6003916)
chr3 (13-63)||(10369747-10369797)
chr3 (13-63)||(33361449-33361499)
chr3 (13-59)||(48032618-48032664)
chr3 (13-63)||(51149205-51149255)
chr3 (26-63)||(17144177-17144214)
chr3 (27-60)||(33003036-33003069)
chr3 (26-59)||(54122910-54122943)
chr3 (26-62)||(48169279-48169315)
[»] chr8 (7 HSPs)
chr8 (27-66)||(30392653-30392692)
chr8 (13-63)||(33069137-33069187)
chr8 (13-64)||(3006109-3006160)
chr8 (26-65)||(5802437-5802476)
chr8 (27-60)||(13325897-13325930)
chr8 (26-63)||(22810622-22810659)
chr8 (15-64)||(40437028-40437077)
[»] chr6 (14 HSPs)
chr6 (13-64)||(12271042-12271093)
chr6 (13-64)||(23764762-23764813)
chr6 (13-63)||(12107717-12107767)
chr6 (13-63)||(35039411-35039461)
chr6 (14-63)||(10493864-10493913)
chr6 (13-69)||(25137703-25137759)
chr6 (28-63)||(891794-891829)
chr6 (13-64)||(13801454-13801505)
chr6 (20-63)||(19134553-19134596)
chr6 (13-64)||(28611325-28611376)
chr6 (13-63)||(5866555-5866605)
chr6 (28-66)||(15860281-15860319)
chr6 (13-62)||(14940015-14940064)
chr6 (15-63)||(32190172-32190220)
[»] chr2 (13 HSPs)
chr2 (26-60)||(11696071-11696105)
chr2 (13-63)||(44979243-44979293)
chr2 (13-56)||(12884973-12885016)
chr2 (28-63)||(15697533-15697568)
chr2 (13-64)||(16579126-16579177)
chr2 (13-63)||(9811876-9811926)
chr2 (13-63)||(11376441-11376491)
chr2 (13-63)||(27300936-27300986)
chr2 (26-63)||(5862105-5862142)
chr2 (26-63)||(19936598-19936635)
chr2 (26-63)||(36412834-36412871)
chr2 (27-63)||(16638616-16638652)
chr2 (19-63)||(41166759-41166803)
[»] scaffold0029 (1 HSPs)
scaffold0029 (13-65)||(47241-47293)
[»] scaffold0308 (1 HSPs)
scaffold0308 (13-64)||(5389-5440)
[»] scaffold0059 (2 HSPs)
scaffold0059 (15-63)||(69008-69056)
scaffold0059 (15-63)||(77114-77162)


Alignment Details
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 62 - 233
Target Start/End: Original strand, 49482834 - 49483006
Alignment:
Q  62 taacttaatcaggagatgagttcttcaaccaaacgtgcaactctgtgtgggaggttgtggcataacagaggatgtggttcatcttgttataacttgtgag 161  Q
    |||||||||||||| ||| ||||| |||||||||| ||| ||||||| ||||||||||| || |||||| || | | ||||| |  ||||||||||||||    
T  49482834 taacttaatcaggatatgggttctacaaccaaacgcgcagctctgtgcgggaggttgtgacaaaacagaagacgggtttcatttatttataacttgtgag 49482933  T
Q  162 -ttctttgggaaaacttgctttgatatttatcgctggttaggaattactaatgttcatctgacaagggttaca 233  Q
     || ||||  |||| ||| ||| ||||||||  ||||||| |||| ||||   |||||| | |||||||||||    
T  49482934 tttttttgaaaaaatttggtttcatatttataactggttaagaatcactatgattcatccggcaagggttaca 49483006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 15881689 - 15881639
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacaccccta 63  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  15881689 ggttcggtttgcagtttttctattggattggttcgattttgaacaccccta 15881639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 27 - 67
Target Start/End: Original strand, 19051732 - 19051772
Alignment:
Q  27 tttttctattggattggttcgattttgaacacccctaactt 67  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  19051732 tttttctattggatttgttcgattttgaacacccctaactt 19051772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 29390229 - 29390281
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacacccctaac 65  Q
    ||||||||||| ||||||||||||| ||| ||||| |||||||||||||||||    
T  29390229 ggtttggtttgcagtttttctattgaattagttcggttttgaacacccctaac 29390281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 33474991 - 33475042
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacacccctaa 64  Q
    |||||||||||| ||||||||||||| |||||| | ||||||||||||||||    
T  33474991 ggtttggtttgtggtttttctattgggttggtttggttttgaacacccctaa 33475042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 63
Target Start/End: Complemental strand, 35979784 - 35979747
Alignment:
Q  26 gtttttctattggattggttcgattttgaacaccccta 63  Q
    |||||||||||||||||||||| |||||||||||||||    
T  35979784 gtttttctattggattggttcggttttgaacaccccta 35979747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 40093789 - 40093740
Alignment:
Q  14 gtttggtttgtagtttttctattggattggttcgattttgaacaccccta 63  Q
    ||||||||||||  ||||||||| |||||||||| |||||||||||||||    
T  40093789 gtttggtttgtaagttttctattagattggttcggttttgaacaccccta 40093740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 8165010 - 8164974
Alignment:
Q  27 tttttctattggattggttcgattttgaacaccccta 63  Q
    |||||||||||| ||||||||||||||||||||||||    
T  8165010 tttttctattgggttggttcgattttgaacaccccta 8164974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 57
Target Start/End: Original strand, 8269264 - 8269295
Alignment:
Q  26 gtttttctattggattggttcgattttgaaca 57  Q
    ||||||||||||||||||||||||||||||||    
T  8269264 gtttttctattggattggttcgattttgaaca 8269295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 51251949 - 51251902
Alignment:
Q  17 tggtttgtagtttttctattggattggttcgattttgaacacccctaa 64  Q
    |||||||  |||||||||||||||||||||| |||| |||||||||||    
T  51251949 tggtttgcggtttttctattggattggttcggttttaaacacccctaa 51251902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 5154930 - 5154880
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacaccccta 63  Q
    |||| ||||||  ||||||||||||| |||||||| |||||||||||||||    
T  5154930 ggttcggtttgcggtttttctattgggttggttcggttttgaacaccccta 5154880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 8211766 - 8211816
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacaccccta 63  Q
    |||| ||||||  ||||||||||||| |||||||| |||||||||||||||    
T  8211766 ggttcggtttgcggtttttctattgggttggttcggttttgaacaccccta 8211816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 12974168 - 12974218
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacaccccta 63  Q
    |||| ||||||  ||||||||||| |||||||||| |||||||||||||||    
T  12974168 ggttcggtttgcggtttttctattagattggttcggttttgaacaccccta 12974218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 18311880 - 18311930
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacaccccta 63  Q
    |||||| ||||  ||||||||||| |||||||||| |||||||||||||||    
T  18311880 ggtttgatttgcggtttttctattagattggttcggttttgaacaccccta 18311930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 20494221 - 20494271
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacaccccta 63  Q
    |||| ||||||  ||||||||||||| |||||||| |||||||||||||||    
T  20494221 ggttcggtttgcggtttttctattgggttggttcggttttgaacaccccta 20494271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 29707675 - 29707625
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacaccccta 63  Q
    |||| ||||||  ||||||||||||| |||||||| |||||||||||||||    
T  29707675 ggttcggtttgcggtttttctattgggttggttcggttttgaacaccccta 29707625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 33910299 - 33910249
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacaccccta 63  Q
    |||||| ||||  ||||||||||||| |||||||| |||||||||||||||    
T  33910299 ggtttgatttgcggtttttctattgggttggttcggttttgaacaccccta 33910249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 63
Target Start/End: Original strand, 4967769 - 4967806
Alignment:
Q  26 gtttttctattggattggttcgattttgaacaccccta 63  Q
    |||||||||||||||| ||||| |||||||||||||||    
T  4967769 gtttttctattggatttgttcggttttgaacaccccta 4967806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 17652326 - 17652375
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacacccct 62  Q
    ||||| |||||  ||||||||||| ||||||||| |||||||||||||||    
T  17652326 ggtttagtttgcggtttttctattagattggttcaattttgaacacccct 17652375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 17989643 - 17989684
Alignment:
Q  18 ggtttgtagtttttctattggattggttcgattttgaacacc 59  Q
    |||||||||||||| |||||||||| |||| |||||||||||    
T  17989643 ggtttgtagtttttttattggattgattcggttttgaacacc 17989684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 59
Target Start/End: Original strand, 24630552 - 24630585
Alignment:
Q  26 gtttttctattggattggttcgattttgaacacc 59  Q
    ||||||||||||| ||||||||||||||||||||    
T  24630552 gtttttctattgggttggttcgattttgaacacc 24630585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 26344534 - 26344498
Alignment:
Q  27 tttttctattggattggttcgattttgaacaccccta 63  Q
    ||||||||||||||||||||| |||| ||||||||||    
T  26344534 tttttctattggattggttcggttttaaacaccccta 26344498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 59
Target Start/End: Complemental strand, 36202933 - 36202901
Alignment:
Q  27 tttttctattggattggttcgattttgaacacc 59  Q
    ||||| |||||||||||||||||||||||||||    
T  36202933 tttttttattggattggttcgattttgaacacc 36202901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 9161541 - 9161592
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacacccctaa 64  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  9161541 ggtttggtttgcagtttttctattgggttggttcgattttgaacacccctaa 9161592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 33901490 - 33901440
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacaccccta 63  Q
    |||||||||||| |||||||||||||||||||| ||||||||| |||||||    
T  33901490 ggtttggtttgtggtttttctattggattggtttgattttgaaaaccccta 33901440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 10174614 - 10174665
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacacccctaa 64  Q
    |||||||||||  ||||||||||||| |||||||| ||||||||||||||||    
T  10174614 ggtttggtttgcggtttttctattgggttggttcggttttgaacacccctaa 10174665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 32520748 - 32520697
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacacccctaa 64  Q
    |||||||||||  ||||||||||||| |||||||| ||||||||||||||||    
T  32520748 ggtttggtttgcggtttttctattgggttggttcggttttgaacacccctaa 32520697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 666855 - 666805
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacaccccta 63  Q
    |||| ||||||  |||||||||||||||||||||| |||||||||||||||    
T  666855 ggttcggtttgcggtttttctattggattggttcggttttgaacaccccta 666805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 8409472 - 8409522
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacaccccta 63  Q
    |||| ||||||  |||||||||||||||||||||| |||||||||||||||    
T  8409472 ggttcggtttgcggtttttctattggattggttcggttttgaacaccccta 8409522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 9988459 - 9988409
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacaccccta 63  Q
    ||||||||||  ||||||||||||||||||||||| |||||||||| ||||    
T  9988459 ggtttggtttacagtttttctattggattggttcggttttgaacactccta 9988409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 64
Target Start/End: Original strand, 2423416 - 2423453
Alignment:
Q  27 tttttctattggattggttcgattttgaacacccctaa 64  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  2423416 tttttctattggattggttcgcttttgaacacccctaa 2423453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 42119414 - 42119462
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacacccc 61  Q
    |||| |||||| |||||||||||||||||| |||| |||||||||||||    
T  42119414 ggttcggtttgcagtttttctattggattgtttcggttttgaacacccc 42119462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 30002484 - 30002535
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacacccctaa 64  Q
    |||| ||||||  ||||||||||||| |||||||| ||||||||||||||||    
T  30002484 ggttcggtttgcggtttttctattgggttggttcggttttgaacacccctaa 30002535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 60
Target Start/End: Original strand, 38147722 - 38147757
Alignment:
Q  25 agtttttctattggattggttcgattttgaacaccc 60  Q
    ||||||||||||||||||||||||||||||| ||||    
T  38147722 agtttttctattggattggttcgattttgaaaaccc 38147757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 701703 - 701753
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacaccccta 63  Q
    |||| ||||||  ||||||||||||| |||||||| |||||||||||||||    
T  701703 ggttcggtttgcggtttttctattgggttggttcggttttgaacaccccta 701753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 64
Target Start/End: Original strand, 6595538 - 6595576
Alignment:
Q  26 gtttttctattggattggttcgattttgaacacccctaa 64  Q
    ||||||||||||||||| ||||||||| |||||||||||    
T  6595538 gtttttctattggattgtttcgattttaaacacccctaa 6595576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 12680598 - 12680548
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacaccccta 63  Q
    |||||| ||||  |||||||||||| ||||||||| |||||||||||||||    
T  12680598 ggtttgatttgcggtttttctattgaattggttcggttttgaacaccccta 12680548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 38334338 - 38334288
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacaccccta 63  Q
    |||| ||||||  ||||||||||||| |||||||| |||||||||||||||    
T  38334338 ggttcggtttgcggtttttctattgggttggttcggttttgaacaccccta 38334288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 60
Target Start/End: Original strand, 6633917 - 6633950
Alignment:
Q  27 tttttctattggattggttcgattttgaacaccc 60  Q
    |||||||||| |||||||||||||||||||||||    
T  6633917 tttttctattagattggttcgattttgaacaccc 6633950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 63
Target Start/End: Original strand, 11917954 - 11917991
Alignment:
Q  26 gtttttctattggattggttcgattttgaacaccccta 63  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  11917954 gtttttctattgggttggttcggttttgaacaccccta 11917991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 14653045 - 14653094
Alignment:
Q  15 tttggtttgtagtttttctattggattggttcgattttgaacacccctaa 64  Q
    |||||||||  ||||||||||||  |||||||||||||||||| ||||||    
T  14653045 tttggtttgcggtttttctattgagttggttcgattttgaacatccctaa 14653094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 63
Target Start/End: Complemental strand, 27885672 - 27885635
Alignment:
Q  26 gtttttctattggattggttcgattttgaacaccccta 63  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  27885672 gtttttctattgggttggttcggttttgaacaccccta 27885635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 63
Target Start/End: Complemental strand, 36176399 - 36176362
Alignment:
Q  26 gtttttctattggattggttcgattttgaacaccccta 63  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  36176399 gtttttctattgggttggttcggttttgaacaccccta 36176362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 7590998 - 7590950
Alignment:
Q  14 gtttggtttgtagtttttctattggattggttcgattttgaacacccct 62  Q
    ||||| |||| | |||||||||||||||| |||| ||||||||||||||    
T  7590998 gtttgttttgcattttttctattggattgattcggttttgaacacccct 7590950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 1335960 - 1336010
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacaccccta 63  Q
    |||||| ||||| ||||||||||||| ||||||||||||||||||||||||    
T  1335960 ggtttgatttgtggtttttctattgggttggttcgattttgaacaccccta 1336010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 31876169 - 31876119
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacaccccta 63  Q
    ||||||||||| |||||||||||||| |||||||| |||||||||||||||    
T  31876169 ggtttggtttgcagtttttctattgggttggttcggttttgaacaccccta 31876119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 42910204 - 42910153
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacacccctaa 64  Q
    |||||||||||  ||||||||||||| |||||||| ||||||||||||||||    
T  42910204 ggtttggtttgcggtttttctattgggttggttcggttttgaacacccctaa 42910153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 64
Target Start/End: Complemental strand, 524339 - 524301
Alignment:
Q  26 gtttttctattggattggttcgattttgaacacccctaa 64  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  524339 gtttttctattgaattggttcgattttgaacacccctaa 524301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 31011249 - 31011203
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacacc 59  Q
    |||||||||||  |||||||||||||||||||||| |||||||||||    
T  31011249 ggtttggtttgcggtttttctattggattggttcggttttgaacacc 31011203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 36921079 - 36921029
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacaccccta 63  Q
    |||||||||||  ||||||||||||| |||||||| |||||||||||||||    
T  36921079 ggtttggtttgcggtttttctattgggttggttcggttttgaacaccccta 36921029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 43429728 - 43429778
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacaccccta 63  Q
    |||||||||||  ||||||||||||| |||||||| |||||||||||||||    
T  43429728 ggtttggtttgcggtttttctattgggttggttcggttttgaacaccccta 43429778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 59
Target Start/End: Original strand, 40849470 - 40849503
Alignment:
Q  26 gtttttctattggattggttcgattttgaacacc 59  Q
    ||||||||||||||||||||||||||||||||||    
T  40849470 gtttttctattggattggttcgattttgaacacc 40849503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 45898077 - 45898028
Alignment:
Q  14 gtttggtttgtagtttttctattggattggttcgattttgaacaccccta 63  Q
    ||||||||||  ||||||||||||| |||||||| |||||||||||||||    
T  45898077 gtttggtttgcggtttttctattgggttggttcggttttgaacaccccta 45898028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 3211729 - 3211679
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacaccccta 63  Q
    |||| ||||||  ||||||||||||| |||||||| |||||||||||||||    
T  3211729 ggttcggtttgcggtttttctattgggttggttcggttttgaacaccccta 3211679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 8768253 - 8768203
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacaccccta 63  Q
    |||| ||||||  ||||||||||||| |||||||| |||||||||||||||    
T  8768253 ggttcggtttgcggtttttctattgggttggttcggttttgaacaccccta 8768203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 11205965 - 11205915
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacaccccta 63  Q
    |||| ||||||  ||||||||||||| |||||||| |||||||||||||||    
T  11205965 ggttcggtttgcggtttttctattgggttggttcggttttgaacaccccta 11205915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 64
Target Start/End: Original strand, 12118109 - 12118147
Alignment:
Q  26 gtttttctattggattggttcgattttgaacacccctaa 64  Q
    ||||||||||||| |||||||| ||||||||||||||||    
T  12118109 gtttttctattgggttggttcggttttgaacacccctaa 12118147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 36509192 - 36509242
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacaccccta 63  Q
    |||||||||||  ||||||||||||| |||||||| |||||||||| ||||    
T  36509192 ggtttggtttgcggtttttctattgggttggttcggttttgaacactccta 36509242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 47204054 - 47204004
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacaccccta 63  Q
    |||| ||||||  ||||||||||||| |||||||| |||||||||||||||    
T  47204054 ggttcggtttgcggtttttctattgggttggttcggttttgaacaccccta 47204004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 23033267 - 23033312
Alignment:
Q  14 gtttggtttgtagtttttctattggattggttcgattttgaacacc 59  Q
    ||||||||||| ||| |||||||||||||||||  |||||||||||    
T  23033267 gtttggtttgtggttattctattggattggttcagttttgaacacc 23033312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 59
Target Start/End: Complemental strand, 30079067 - 30079034
Alignment:
Q  26 gtttttctattggattggttcgattttgaacacc 59  Q
    |||||||||||||||||||||| |||||||||||    
T  30079067 gtttttctattggattggttcggttttgaacacc 30079034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 64
Target Start/End: Complemental strand, 31287247 - 31287210
Alignment:
Q  27 tttttctattggattggttcgattttgaacacccctaa 64  Q
    ||||||| ||||||||||||| ||||||||||||||||    
T  31287247 tttttcttttggattggttcggttttgaacacccctaa 31287210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 22367000 - 22367052
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacacccctaac 65  Q
    |||||| ||||  |||||| |||||| |||||||| |||||||||||||||||    
T  22367000 ggtttgatttgcggtttttttattgggttggttcggttttgaacacccctaac 22367052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 60
Target Start/End: Complemental strand, 29211098 - 29211066
Alignment:
Q  28 ttttctattggattggttcgattttgaacaccc 60  Q
    |||||||||||||||||||| ||||||||||||    
T  29211098 ttttctattggattggttcggttttgaacaccc 29211066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 48643388 - 48643424
Alignment:
Q  27 tttttctattggattggttcgattttgaacaccccta 63  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  48643388 tttttcaattgggttggttcgattttgaacaccccta 48643424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 8176135 - 8176085
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacaccccta 63  Q
    |||||||||||| ||||||||||| | ||||||||||||||||||||||||    
T  8176135 ggtttggtttgtggtttttctatttggttggttcgattttgaacaccccta 8176085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 64
Target Start/End: Original strand, 35014884 - 35014922
Alignment:
Q  26 gtttttctattggattggttcgattttgaacacccctaa 64  Q
    |||||||||||||||||||||||||||||||||||||||    
T  35014884 gtttttctattggattggttcgattttgaacacccctaa 35014922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 15986041 - 15985993
Alignment:
Q  15 tttggtttgtagtttttctattggattggttcgattttgaacaccccta 63  Q
    ||||||||  |||||||||||||||||||||| ||||||||||||||||    
T  15986041 tttggtttacagtttttctattggattggttcaattttgaacaccccta 15985993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 5121875 - 5121820
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacacccctaactta 68  Q
    |||| ||||||  ||||||||||||| |||||||| ||||||||||||||||||||    
T  5121875 ggttcggtttgcggtttttctattgggttggttcggttttgaacacccctaactta 5121820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 5261378 - 5261327
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacacccctaa 64  Q
    |||||||| || |||||||||||||| |||||||| ||||||||||||||||    
T  5261378 ggtttggtatgcagtttttctattgggttggttcggttttgaacacccctaa 5261327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 48996639 - 48996690
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacacccctaa 64  Q
    ||||||||||| |||||||||||||| |||||| | ||||||||||||||||    
T  48996639 ggtttggtttgcagtttttctattgggttggtttggttttgaacacccctaa 48996690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 64
Target Start/End: Original strand, 6333873 - 6333923
Alignment:
Q  14 gtttggtttgtagtttttctattggattggttcgattttgaacacccctaa 64  Q
    ||||||||||  ||||||||||||| |||||| ||||||||||||||||||    
T  6333873 gtttggtttgcggtttttctattgggttggttggattttgaacacccctaa 6333923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 10777869 - 10777819
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacaccccta 63  Q
    |||||||||||  ||||||||||||| |||||||| |||||||||||||||    
T  10777869 ggtttggtttggggtttttctattgggttggttcggttttgaacaccccta 10777819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 21069651 - 21069697
Alignment:
Q  18 ggtttgtagtttttctattggattggttcgattttgaacacccctaa 64  Q
    ||||||| ||||||||||||||||| |||| ||||||||||||||||    
T  21069651 ggtttgtggtttttctattggattgattcggttttgaacacccctaa 21069697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 30193503 - 30193453
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacaccccta 63  Q
    ||||||||||| |||||||||||||  |||||||| |||||||||||||||    
T  30193503 ggtttggtttgcagtttttctattgagttggttcggttttgaacaccccta 30193453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 31301949 - 31301999
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacaccccta 63  Q
    |||||||||||  ||||||||||||| |||||||| |||||||||||||||    
T  31301949 ggtttggtttgcggtttttctattgggttggttcggttttgaacaccccta 31301999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 63
Target Start/End: Complemental strand, 32222811 - 32222774
Alignment:
Q  26 gtttttctattggattggttcgattttgaacaccccta 63  Q
    |||||||||||||||||||||| |||||||||||||||    
T  32222811 gtttttctattggattggttcggttttgaacaccccta 32222774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 18536137 - 18536093
Alignment:
Q  19 gtttgtagtttttctattggattggttcgattttgaacaccccta 63  Q
    ||||| ||||||||||||||||||||| | |||||||||||||||    
T  18536137 gtttgcagtttttctattggattggtttggttttgaacaccccta 18536093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 29640131 - 29640183
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacacccctaac 65  Q
    |||| ||||||  ||||||||||||| |||||||| |||||||||||||||||    
T  29640131 ggttcggtttgcggtttttctattgggttggttcggttttgaacacccctaac 29640183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 41325996 - 41326040
Alignment:
Q  15 tttggtttgtagtttttctattggattggttcgattttgaacacc 59  Q
    |||||||||  |||||||||||||||||||| |||||||||||||    
T  41325996 tttggtttgcggtttttctattggattggtttgattttgaacacc 41326040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 23119785 - 23119738
Alignment:
Q  18 ggtttgtagtttttctattggattggttcgattttgaacacccctaac 65  Q
    |||||| |||||| |||||||||||||||| |||||| ||||||||||    
T  23119785 ggtttgcagttttcctattggattggttcggttttgagcacccctaac 23119738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 32137255 - 32137306
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacacccctaa 64  Q
    |||||||||||  ||||||||||||| |||||||| |||||||||| |||||    
T  32137255 ggtttggtttgcggtttttctattgggttggttcggttttgaacactcctaa 32137306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 52345370 - 52345421
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacacccctaa 64  Q
    |||||||||||  ||||||||||||| |||||||| ||||||| ||||||||    
T  52345370 ggtttggtttgcggtttttctattgggttggttcggttttgaatacccctaa 52345421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 54997279 - 54997232
Alignment:
Q  20 tttgtagtttttctattggattggttcgattttgaacacccctaactt 67  Q
    ||||| ||||||||||| ||||| |||||||||||||||| |||||||    
T  54997279 tttgtggtttttctattagattgattcgattttgaacacctctaactt 54997232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 3666558 - 3666512
Alignment:
Q  13 ggtttggtttgtagtttttc-tattggattggttcgattttgaacac 58  Q
    |||||||||||||||||||| ||||||||||||||| |||| |||||    
T  3666558 ggtttggtttgtagtttttcctattggattggttcggttttaaacac 3666512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 10219233 - 10219283
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacaccccta 63  Q
    |||||||||||  ||||||||||||| || ||||| |||||||||||||||    
T  10219233 ggtttggtttgcggtttttctattgggttcgttcggttttgaacaccccta 10219283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 20986998 - 20987044
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacacc 59  Q
    |||||||||||  |||||||||||||||||||||  |||||||||||    
T  20986998 ggtttggtttgcggtttttctattggattggttctgttttgaacacc 20987044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 42558219 - 42558269
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacaccccta 63  Q
    |||| ||||||  ||||||||||||| |||||||| |||||||||||||||    
T  42558219 ggttcggtttgcggtttttctattgggttggttcggttttgaacaccccta 42558269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 64
Target Start/End: Complemental strand, 48292916 - 48292878
Alignment:
Q  26 gtttttctattggattggttcgattttgaacacccctaa 64  Q
    |||||||||||||||||||||  ||||||||||||||||    
T  48292916 gtttttctattggattggttcagttttgaacacccctaa 48292878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 50570545 - 50570495
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacaccccta 63  Q
    |||| ||||||  ||||||||||||| |||||||| |||||||||||||||    
T  50570545 ggttcggtttgcggtttttctattgggttggttcggttttgaacaccccta 50570495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 51395379 - 51395429
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacaccccta 63  Q
    |||||| ||||  ||||||||||||| |||||||| |||||||||||||||    
T  51395379 ggtttgatttgcggtttttctattgggttggttcggttttgaacaccccta 51395429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 43631086 - 43631131
Alignment:
Q  18 ggtttgtagtttttctattggattggttcgattttgaacaccccta 63  Q
    |||||||  ||||| |||||| ||||||||||||||||||||||||    
T  43631086 ggtttgtgatttttttattgggttggttcgattttgaacaccccta 43631131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 63
Target Start/End: Complemental strand, 48601991 - 48601954
Alignment:
Q  26 gtttttctattggattggttcgattttgaacaccccta 63  Q
    |||||||||||||||||||| | |||||||||||||||    
T  48601991 gtttttctattggattggtttggttttgaacaccccta 48601954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 38651518 - 38651474
Alignment:
Q  20 tttgtagtttttctattggattggttcgattttgaacacccctaa 64  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||    
T  38651518 tttgcagtttttctattggattggttcggttttgaacacccctaa 38651474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 44651556 - 44651592
Alignment:
Q  27 tttttctattggattggttcgattttgaacaccccta 63  Q
    |||||||||||||||||||||||||||||||||||||    
T  44651556 tttttctattggattggttcgattttgaacaccccta 44651592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 35401757 - 35401706
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacacccctaa 64  Q
    |||| ||||||  ||||||||||||| |||||||||||||||||||||||||    
T  35401757 ggttcggtttgcggtttttctattgggttggttcgattttgaacacccctaa 35401706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 50562124 - 50562073
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacacccctaa 64  Q
    |||||||||||| |||||| |||| |||||||||| ||||||||||||||||    
T  50562124 ggtttggtttgtggtttttttattagattggttcggttttgaacacccctaa 50562073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 60
Target Start/End: Original strand, 4555221 - 4555255
Alignment:
Q  26 gtttttctattggattggttcgattttgaacaccc 60  Q
    |||||||||||||||||||||||||||||||||||    
T  4555221 gtttttctattggattggttcgattttgaacaccc 4555255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 63
Target Start/End: Complemental strand, 55467108 - 55467071
Alignment:
Q  26 gtttttctattggattggttcgattttgaacaccccta 63  Q
    |||||||||||||||||||||| |||||||||||||||    
T  55467108 gtttttctattggattggttcggttttgaacaccccta 55467071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 63
Target Start/End: Complemental strand, 8557247 - 8557212
Alignment:
Q  28 ttttctattggattggttcgattttgaacaccccta 63  Q
    |||||||||||||||||||| |||||||||||||||    
T  8557247 ttttctattggattggttcggttttgaacaccccta 8557212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 21586375 - 21586324
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacacccctaa 64  Q
    |||||||||||  |||||| |||||| |||||||| ||||||||||||||||    
T  21586375 ggtttggtttgcggtttttttattgggttggttcggttttgaacacccctaa 21586324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 25918730 - 25918679
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacacccctaa 64  Q
    |||||||||||  || ||||||||||||| ||||| ||||||||||||||||    
T  25918730 ggtttggtttgcggtgtttctattggattagttcggttttgaacacccctaa 25918679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 4669180 - 4669130
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacaccccta 63  Q
    |||| ||||||  ||||||||||||| |||||||| |||||||||||||||    
T  4669180 ggttcggtttgcggtttttctattgggttggttcggttttgaacaccccta 4669130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 6003916 - 6003866
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacaccccta 63  Q
    |||||| ||||  ||||||||||||| |||||||| |||||||||||||||    
T  6003916 ggtttgatttgcggtttttctattgggttggttcggttttgaacaccccta 6003866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 10369747 - 10369797
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacaccccta 63  Q
    |||| ||||||  ||||||||||||| |||||||| |||||||||||||||    
T  10369747 ggttcggtttgcggtttttctattgggttggttcggttttgaacaccccta 10369797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 33361449 - 33361499
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacaccccta 63  Q
    |||| ||||||  ||||||||||||| |||||||| |||||||||||||||    
T  33361449 ggttcggtttgcggtttttctattgggttggttcggttttgaacaccccta 33361499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 48032664 - 48032618
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacacc 59  Q
    |||||||||||  ||||||||||||| |||||||| |||||||||||    
T  48032664 ggtttggtttgcggtttttctattgggttggttcggttttgaacacc 48032618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 51149255 - 51149205
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacaccccta 63  Q
    |||| ||||||  ||||||||||||| |||||||| |||||||||||||||    
T  51149255 ggttcggtttgcggtttttctattgggttggttcggttttgaacaccccta 51149205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 63
Target Start/End: Complemental strand, 17144214 - 17144177
Alignment:
Q  26 gtttttctattggattggttcgattttgaacaccccta 63  Q
    |||||||||||| ||||||||| |||||||||||||||    
T  17144214 gtttttctattgaattggttcggttttgaacaccccta 17144177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 60
Target Start/End: Original strand, 33003036 - 33003069
Alignment:
Q  27 tttttctattggattggttcgattttgaacaccc 60  Q
    ||||||||||||||||||||| ||||||||||||    
T  33003036 tttttctattggattggttcggttttgaacaccc 33003069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 59
Target Start/End: Original strand, 54122910 - 54122943
Alignment:
Q  26 gtttttctattggattggttcgattttgaacacc 59  Q
    |||||| |||||||||||||||||||||||||||    
T  54122910 gtttttttattggattggttcgattttgaacacc 54122943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 62
Target Start/End: Original strand, 48169279 - 48169315
Alignment:
Q  26 gtttttctattggattggttcgattttgaacacccct 62  Q
    ||||||||||||||||| |||| ||||||||||||||    
T  48169279 gtttttctattggattgattcggttttgaacacccct 48169315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 66
Target Start/End: Original strand, 30392653 - 30392692
Alignment:
Q  27 tttttctattggattggttcgattttgaacacccctaact 66  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  30392653 tttttctattggattggttcgattttgaacactcctaact 30392692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 33069137 - 33069187
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacaccccta 63  Q
    |||||||||||  ||||||||||||| |||||||| |||||||||||||||    
T  33069137 ggtttggtttgcggtttttctattgggttggttcggttttgaacaccccta 33069187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 3006160 - 3006109
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacacccctaa 64  Q
    |||| ||||||  ||||||||||||| |||||||| ||||||||||||||||    
T  3006160 ggttcggtttgcggtttttctattgggttggttcggttttgaacacccctaa 3006109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 65
Target Start/End: Complemental strand, 5802476 - 5802437
Alignment:
Q  26 gtttttctattggattggttcgattttgaacacccctaac 65  Q
    ||||||||||||| |||||||| |||||||||||||||||    
T  5802476 gtttttctattgggttggttcggttttgaacacccctaac 5802437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 60
Target Start/End: Original strand, 13325897 - 13325930
Alignment:
Q  27 tttttctattggattggttcgattttgaacaccc 60  Q
    ||||||| ||||||||||||||||||||||||||    
T  13325897 tttttcttttggattggttcgattttgaacaccc 13325930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 63
Target Start/End: Complemental strand, 22810659 - 22810622
Alignment:
Q  26 gtttttctattggattggttcgattttgaacaccccta 63  Q
    |||||||| ||||||||||||| |||||||||||||||    
T  22810659 gtttttcttttggattggttcggttttgaacaccccta 22810622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 40437028 - 40437077
Alignment:
Q  15 tttggtttgtagtttttctattggattggttcgattttgaacacccctaa 64  Q
    |||| |||| ||||||||||||||||||||||| |||| |||||| ||||    
T  40437028 tttgatttgcagtttttctattggattggttcggttttaaacacctctaa 40437077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 12271042 - 12271093
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacacccctaa 64  Q
    |||| ||||||  ||||||||||||| |||||||||||||||||||||||||    
T  12271042 ggttcggtttgcggtttttctattgggttggttcgattttgaacacccctaa 12271093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 23764813 - 23764762
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacacccctaa 64  Q
    |||| |||||| ||||||||||||| ||||||||| ||||||||||||||||    
T  23764813 ggttcggtttgcagtttttctattgtattggttcggttttgaacacccctaa 23764762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 12107717 - 12107767
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacaccccta 63  Q
    |||| ||||||| |||||||||||||||||||| | |||||||||||||||    
T  12107717 ggttcggtttgtggtttttctattggattggtttggttttgaacaccccta 12107767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 35039461 - 35039411
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacaccccta 63  Q
    |||||||||||  ||||||||||||| |||||||| |||||||||||||||    
T  35039461 ggtttggtttgcggtttttctattgggttggttcggttttgaacaccccta 35039411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 10493913 - 10493864
Alignment:
Q  14 gtttggtttgtagtttttctattggattggttcgattttgaacaccccta 63  Q
    |||| ||||| |||||||||||||| || |||||||||||||||||||||    
T  10493913 gtttagtttgcagtttttctattgggttagttcgattttgaacaccccta 10493864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 25137703 - 25137759
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacacccctaacttaa 69  Q
    |||||||||||  |||||||| |||| ||||||| ||||||||||||||||| ||||    
T  25137703 ggtttggtttgcggtttttctgttgggttggttcaattttgaacacccctaatttaa 25137759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 63
Target Start/End: Complemental strand, 891829 - 891794
Alignment:
Q  28 ttttctattggattggttcgattttgaacaccccta 63  Q
    |||||||||||||||||||| |||||||||||||||    
T  891829 ttttctattggattggttcggttttgaacaccccta 891794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 13801505 - 13801454
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacacccctaa 64  Q
    |||||||||||  ||||||||||||| | |||||| ||||||||||||||||    
T  13801505 ggtttggtttgcggtttttctattgggtgggttcggttttgaacacccctaa 13801454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 19134596 - 19134553
Alignment:
Q  20 tttgtagtttttctattggattggttcgattttgaacaccccta 63  Q
    ||||| |||||||||||||||||||||| |||| ||||||||||    
T  19134596 tttgtggtttttctattggattggttcggttttaaacaccccta 19134553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 28611325 - 28611376
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacacccctaa 64  Q
    |||| ||||||| ||| || ||||||||| ||||||||||||||||||||||    
T  28611325 ggttcggtttgtggttgttatattggattagttcgattttgaacacccctaa 28611376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 5866605 - 5866555
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacaccccta 63  Q
    |||| ||||||  ||||||||||||| |||||||| |||||||||||||||    
T  5866605 ggttcggtttgcggtttttctattgggttggttcggttttgaacaccccta 5866555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 66
Target Start/End: Original strand, 15860281 - 15860319
Alignment:
Q  28 ttttctattggattggttcgattttgaacacccctaact 66  Q
    ||||||||||| |||||||| ||||||||||||||||||    
T  15860281 ttttctattgggttggttcggttttgaacacccctaact 15860319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 14940064 - 14940015
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacacccct 62  Q
    |||| ||||| | |||||||||||| ||||||| ||||||||||||||||    
T  14940064 ggttcggtttttggtttttctattgaattggtttgattttgaacacccct 14940015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 32190220 - 32190172
Alignment:
Q  15 tttggtttgtagtttttctattggattggttcgattttgaacaccccta 63  Q
    ||||||||| |||||||| ||||||||  |||| |||||||||||||||    
T  32190220 tttggtttgcagtttttcaattggattatttcggttttgaacaccccta 32190172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 60
Target Start/End: Original strand, 11696071 - 11696105
Alignment:
Q  26 gtttttctattggattggttcgattttgaacaccc 60  Q
    |||||||||||||||||||||||||||||||||||    
T  11696071 gtttttctattggattggttcgattttgaacaccc 11696105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 44979293 - 44979243
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacaccccta 63  Q
    |||||||||||  ||||||||||||| |||||||| |||||||||||||||    
T  44979293 ggtttggtttgcggtttttctattgggttggttcggttttgaacaccccta 44979243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 12884973 - 12885016
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaac 56  Q
    |||| |||||| ||||||||||||||||||||||| ||||||||    
T  12884973 ggttcggtttgcagtttttctattggattggttcggttttgaac 12885016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 63
Target Start/End: Complemental strand, 15697568 - 15697533
Alignment:
Q  28 ttttctattggattggttcgattttgaacaccccta 63  Q
    ||||||||||| ||||||||||||||||||||||||    
T  15697568 ttttctattgggttggttcgattttgaacaccccta 15697533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 16579126 - 16579177
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacacccctaa 64  Q
    |||| ||||||  ||||||||||||| |||||||| ||||||||||||||||    
T  16579126 ggttcggtttgcggtttttctattgggttggttcggttttgaacacccctaa 16579177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 9811876 - 9811926
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacaccccta 63  Q
    |||| ||||||  ||||||||||||| |||||||| |||||||||||||||    
T  9811876 ggttcggtttgcggtttttctattgggttggttcggttttgaacaccccta 9811926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 11376441 - 11376491
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacaccccta 63  Q
    |||||| ||||  ||||||||||||| |||||||| |||||||||||||||    
T  11376441 ggtttgatttgcggtttttctattgggttggttcggttttgaacaccccta 11376491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 27300986 - 27300936
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacaccccta 63  Q
    |||| ||||||  ||||||||||| |||||||||||||||||||| |||||    
T  27300986 ggttcggtttgcggtttttctattagattggttcgattttgaacatcccta 27300936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 63
Target Start/End: Complemental strand, 5862142 - 5862105
Alignment:
Q  26 gtttttctattggattggttcgattttgaacaccccta 63  Q
    |||||||||||| ||||||||| |||||||||||||||    
T  5862142 gtttttctattgaattggttcggttttgaacaccccta 5862105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 63
Target Start/End: Complemental strand, 19936635 - 19936598
Alignment:
Q  26 gtttttctattggattggttcgattttgaacaccccta 63  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  19936635 gtttttctattgggttggttcggttttgaacaccccta 19936598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 63
Target Start/End: Complemental strand, 36412871 - 36412834
Alignment:
Q  26 gtttttctattggattggttcgattttgaacaccccta 63  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  36412871 gtttttctattgggttggttcggttttgaacaccccta 36412834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 16638616 - 16638652
Alignment:
Q  27 tttttctattggattggttcgattttgaacaccccta 63  Q
    |||||||||||| |||||| |||||||||||||||||    
T  16638616 tttttctattgggttggtttgattttgaacaccccta 16638652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 41166759 - 41166803
Alignment:
Q  19 gtttgtagtttttctattggattggttcgattttgaacaccccta 63  Q
    ||||| ||||||| |||||||||| |||| |||||||||||||||    
T  41166759 gtttgcagtttttttattggattgcttcggttttgaacaccccta 41166803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 47293 - 47241
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacacccctaac 65  Q
    ||||| ||||| |||||||||||||  |||||| |||||||||||||||||||    
T  47293 ggttttgtttgcagtttttctattgcgttggtttgattttgaacacccctaac 47241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 5440 - 5389
Alignment:
Q  13 ggtttggtttgtagtttttctattggattggttcgattttgaacacccctaa 64  Q
    |||| ||||||  ||||||||||||| |||||||| ||||||||||||||||    
T  5440 ggttcggtttgcggtttttctattgggttggttcggttttgaacacccctaa 5389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 69056 - 69008
Alignment:
Q  15 tttggtttgtagtttttctattggattggttcgattttgaacaccccta 63  Q
    |||||||| | ||||||||||||| |||||||| |||| ||||||||||    
T  69056 tttggtttttggtttttctattgggttggttcggttttaaacaccccta 69008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 77162 - 77114
Alignment:
Q  15 tttggtttgtagtttttctattggattggttcgattttgaacaccccta 63  Q
    |||||||| | ||||||||||||| |||||||| |||| ||||||||||    
T  77162 tttggtttttggtttttctattgggttggttcggttttaaacaccccta 77114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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